EWM20678.1, cds9996 (CDS) Nannochloropsis gaditana

Overview
NameEWM20678.1
Unique Namecds9996
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037260.1:39491..39596 -
Alignment locationKK037260.1:38958..39160 -
Alignment locationKK037260.1:38625..38747 -
Alignment locationKK037260.1:38290..38511 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20678.1
Productplant
Orig transcript idgnl|cribi|Naga_100760g1.4053.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:39491..39596 -
KK037260.1supercontigKK037260.1:38958..39160 -
KK037260.1supercontigKK037260.1:38625..38747 -
KK037260.1supercontigKK037260.1:38290..38511 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Homology
[Close]
BLAST of EWM20678.1 vs. NCBI_GenBank
Match: gi|585100493|gb|EWM20678.1| (plant [Nannochloropsis gaditana])

HSP 1 Score: 446.047 bits (1146), Expect = 1.540e-158
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 
Query:    1 MKAVDLDLALCHTTQGTLQVRLLYHPVQRPEEKTEDHAVSEDLAALEEELATGSLWADADVHDKEEGKGEGEETSTGAVEGARGGQRGILTVEGLQLTGYTSKDTFWGGSKVFIRLALGTSIVRTVPERTPCQDPAFLDQFTFNIDDRVRGTSLDVTIIENRALGPAKFLGRASINLSTFTRRPGKTEADWPVYLKGKVVHVHIRAYFSPLMSQEAS 217
            MKAVDLDLALCHTTQGTLQVRLLYHPVQRPEEKTEDHAVSEDLAALEEELATGSLWADADVHDKEEGKGEGEETSTGAVEGARGGQRGILTVEGLQLTGYTSKDTFWGGSKVFIRLALGTSIVRTVPERTPCQDPAFLDQFTFNIDDRVRGTSLDVTIIENRALGPAKFLGRASINLSTFTRRPGKTEADWPVYLKGKVVHVHIRAYFSPLMSQEAS
Sbjct:    1 MKAVDLDLALCHTTQGTLQVRLLYHPVQRPEEKTEDHAVSEDLAALEEELATGSLWADADVHDKEEGKGEGEETSTGAVEGARGGQRGILTVEGLQLTGYTSKDTFWGGSKVFIRLALGTSIVRTVPERTPCQDPAFLDQFTFNIDDRVRGTSLDVTIIENRALGPAKFLGRASINLSTFTRRPGKTEADWPVYLKGKVVHVHIRAYFSPLMSQEAS 217
The following BLAST results are available for this feature:
BLAST of EWM20678.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100493|gb|EWM20678.1|1.540e-158100.00plant [Nannochloropsis gaditana][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10027rna10027Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications