rna10025, rna10025 (mRNA) Nannochloropsis gaditana

Overview
Namerna10025
Unique Namerna10025
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1714
Alignment locationKK037260.1:28647..28987 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100704g3.5540.mrna
Orig protein idgnl|cribi|Naga_100704g3.5540
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:28647..28987 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100704g3gene9727Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10025rna10025-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20679.1cds9994Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10025 ID=rna10025|Name=rna10025|organism=Nannochloropsis gaditana|type=mRNA|length=1714bp
ATCAAGACACACAGACTGCTCCAAACCCACTTTCACCTCCTGCCTCCCCT
TCATCAGCCCACCCTCTTAGGTTGCAATGAGTATCTCGACAAATACGCCT
TCAATCAGGCGCCAGCGTGGTATCGAGCGGATGCTTTTGGCAGTCCTGTC
CCTTGGTACAGTGTTGGTGCAAGCCAAAGCTTTCTCCTTCCACGGCGGCG
GAGGGGTAGGGTCCTGCGCTACCAAGGTAGGGAGCAGGTTTGTAGTCCCC
ACTCTCTTTTCTCCGGGCTGCATGAGTATGGCAAGGCCCGTCACTCCGCT
GCTGGCAAGTCTGCGAGGCGGGGCGACAAATGGTGCGGAGGGCGGGCGCG
ATGTGGCTTCTTCCAGGGTACGCGTGCGGGAAGTACGTCGGAATGGGTAT
ACGGCGGACGGGCGCCGACGTCTCTTGTCCATGCGAGAGCTCTTCGGCCA
CCAAGAGGGCAGTCCGGAGGGAAATGACTCCTCTGGAGGGCTTTTTTCGG
CCGCGGGGTCCCAAAAACTCTTCTCGAGGGATGGGGCGTTACGTCTGGTG
GGGTACGCGGCCGTCGCCTACATTGGCAAACAGGTGTTCAACGGCGGGCG
GTACGACGAAAACCCGGATTTGGCGGGAAGGGTGGCGGTCATCACGGGTG
GGAACACAGGAATTGGCAAAGAAACGGCCATCCGTCTGGCCAGTATGGGC
GCCCGGGTCTTAATCGCTTGCCGCAATCCGGAGAAAGGAGAGACGGCGGT
CCGAGACATCCTCGACGCCGTCTCCCCCCCATCCGCAACCGACGCGCCCG
TCAGTGGGAGGAAAGCCATCAATTCTCCCCCGCAGGTGGAGAGTCTCGTG
TTGGACCTGGCGGATTTAAAGAGCATCGACCGTTTCGCGACGGAGTTGGG
CAAACGGGTGGATCGGGTGGACATGCTCATCAACAACGCCGGGGTCATGG
CGGTTAGCCGCCTGGAGAGAACCAAGGACGGCTTCGAACGTCACTTGGGC
GTGAACCATCTCGGACATTTCCACCTGACCAACCGTCTCTTCGACCTGTT
GCTCAAGGGCGGATCCACCCGGGAGGGAGTCCGCATCGTGAACGTGGCGA
GTGAAGCCCACCGGTTTGGGGGCCTCGATCCTCAAGACCCCAATTATCTC
CGGCGCGAGTACAAGAAATGGGAGGCGTACGGACAGAGCAAACTTGCCAA
CATTTTATTCACCCGGGAATTGCACCGACGATTGGCAGAGAAAGGGCTGG
ACAAACGGATTTTGGCCGTCTGTTGCCACCCCGGCGTGGTCCGCACAGAA
CTGGGTCGGTATTTGATCGACGATATCCCCAGCGTAGGGAAAGTGGCCTT
GGCACCCTTGGCCTTGGCAGGCTGGTATTTTACCAAGAGTCCTAAGCAAG
GGTCGCAGACACAAGTGTACCTCGCGGCGAGCCCCACTTTGAAAGAGGAA
GCCGAGCAAGGGGCCGCGGTGGGGGGCACGTATTTCTCAGACTGTCGGCC
GAAGAAGACGACCAAGGAAGCAGAAGACTTGGCGTTGGCGGGGGAGCTGT
GGAAGCTTAGTGAAAAACTGACCGGCTCTTCGTTTTCCGTTTAGTGTGTG
GGAAGTCGGACAGTCCGGGGCCGTGAGAGATGCTTGGGCACAGGCCATTG
GAGATTTGGCGTGGCTGGTGGGCTTTCAAAGTCAATTGCAAGTGAACAGA
GCAAAGAAATTTCA
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protein sequence of rna10025

>rna10025-protein ID=rna10025-protein|Name=rna10025|organism=Nannochloropsis gaditana|type=polypeptide|length=85bp
MLDLCKRLRQETIIESIRSSFLGLVDPWKQENKTRSNIAPPLSCTLLSYK
SEMYFRRDRVIAVIQASILDRRDNTRLLEHGSKRE
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mRNA from alignment at KK037260.1:28647..28987-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10025 ID=rna10025|Name=rna10025|organism=Nannochloropsis gaditana|type=mRNA|length=341bp|location=Sequence derived from alignment at KK037260.1:28647..28987- (Nannochloropsis gaditana)
ATGCTTGACCTTTGCAAGCGGCTGCGCCAGGAAACCATCATAGAGAGTAT
TAGAAGTAGCTTTCTTGGGCTAGTGGACCCCTGGAAACAAGGTGCAGATG
TAATCATTTACACCAGTGGTGCTATTGCGGCCATGCTGGGATAGTACGTG
TGGATTAAATCTGGCCCTTTGCAGAGAATAAAACGAGGTCGAATATAGCG
CCTCCTCTATCATGTACTCTACTATCATATAAGTCGGAAATGTACTTCCG
GCGTGATCGTGTCATTGCGGTAATTCAGGCGTCGATTTTGGACAGGAGAG
ACAACACGCGTCTACTTGAGCACGGCAGTAAACGGGAATAA
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Coding sequence (CDS) from alignment at KK037260.1:28647..28987-

>rna10025 ID=rna10025|Name=rna10025|organism=Nannochloropsis gaditana|type=CDS|length=516bp|location=Sequence derived from alignment at KK037260.1:28647..28987- (Nannochloropsis gaditana)
AGAATAAAACGAGGTCGAATATAGCGCCTCCTCTATCATGTACTCTACTA
TCATATAAGTCGGAAATGTACTTCCGGCGTGATCGTGTCATTGCGGTAAT
TCAGGCGTCGATTTTGGACAGGAGAGACAACACGCGTCTACTTGAGCACG
GCAGTAAACGGGAATAAATGCTTGACCTTTGCAAGCGGCTGCGCCAGGAA
ACCATCATAGAGAGTATTAGAAGTAGCTTTCTTGGGCTAGTGGACCCCTG
GAAACAAGAGAATAAAACGAGGTCGAATATAGCGCCTCCTCTATCATGTA
CTCTACTATCATATAAGTCGGAAATGTACTTCCGGCGTGATCGTGTCATT
GCGGTAATTCAGGCGTCGATTTTGGACAGGAGAGACAACACGCGTCTACT
TGAGCACGGCAGTAAACGGGAATAAATGCTTGACCTTTGCAAGCGGCTGC
GCCAGGAAACCATCATAGAGAGTATTAGAAGTAGCTTTCTTGGGCTAGTG
GACCCCTGGAAACAAG
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Synonyms
Publications