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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase |
| Orig transcript id | gnl|cribi|Naga_100704g2.5542.mrna |
| Orig protein id | gnl|cribi|Naga_100704g2.5542 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KK037260.1 | supercontig | KK037260.1:26451..28487 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna10024 ID=rna10024|Name=rna10024|organism=Nannochloropsis gaditana|type=mRNA|length=1071bp
CTATTCGCAGGATCGACCTTGTGTACGACGCATCCCACTCGGTAGTACCC
CTTTTCCCGACGCAGACAGACCACCAGGAAGAAAATGCTTTCTCAGGCAA
GATCCCGCACGGAGCTTGCTTTTATGGAAGCGGGCGTGGAGCAAGACGTC
AGGGCGGATGGACGTCGGCGCGTCGATTATCGGGATATCAGCGTCACCGT
CGATGTCGTACCCTCTAGCCACGGCTCTGCCAGAGTGATCCTAGGTCACG
ACGCCACGGAGGTTTTGGCTGTGGTGAAAGCCGATCTTTCGCAACCTTCA
TACGAACGAGCAAGGTGCGGCACGCTCGAGTTGAATGTGGAAGTGTCTCC
TTTGGCTTTGCTTTATAAAGAGACAGGTCGGGAGGTGGAGGATTTAAATG
CGGAGTTGACCACGGCATTTGAGTCCTTTCTCGTGGAGTCTGGGGCCTTA
GACATGGAGGCATTGTGTATTACTCCTGGGAAGTACGCCTGGACCATATA
TCTCGACGTGATTGTGTTGGAGGGACAGGGCAATATCTTGGATGCGGTCT
CTTTGGCGGCCTATGCCGCCTTGCGAACCGCAGCGTTGCCTGGTGTCGAC
GCCATTTCCGGTGGACTGGACTCGGCTAACAACCCCATCGAAGATTTCGA
GCTGTCCTCCACCGACATCCTGGACGCGAAACCTTTGCCCGTGCAAAACC
TGCCCATCTGCATCACCCTAAACCGTATCGGGAACTTCGTGGTGGTAGAC
ACGGCGGCGGAGGAAGAGGCAGAAGGCGGGGTTCAAGCACGCTTGACTGT
CGCAGTGGATGAGACAGGGCATATTTGCGGGTTGTACAAAGGGGCTGGGG
GTGGTTTCCCGGTGGGGGAGATGCATACATTGGCCCAACATGCCGTGCCC
ATTGCCAAGAAGGTTTTGGAGGGGCTGAAAGCCGCCATCGGCTTGACGGA
CAAGAAAGAGAAAAAGGGTATCGAGAAAGGTTCCTCGAAGTTGCGTTGTG
AAGCAGGCACTTGGAGAAGAGATGCGTGCGTCGGAGAATAAAATGGAAGG
AAGCACCAAAGCACTGAATGC back to topprotein sequence of rna10024 >rna10024-protein ID=rna10024-protein|Name=rna10024|organism=Nannochloropsis gaditana|type=polypeptide|length=505bp
MSISTNTPSIRRQRGIERMLLAVLSLGTVLVQAKAFSFHGGGGVGSCATK
VGSRFVVPTLFSPGCMSMARPVTPLLASLRGGATNGAEGGRDVASSRVRV
REVRRNGYTADGRRRLLSMRELFGHQEGSPEGNDSSGGLFSAAGSQKLFS
RDGALRLVGYAAVAYIGKQVFNGGRYDENPDLAGRVAVITGGNTGIGKET
AIRLASMGARVLIACRNPEKGETAVRDILDAVSPPSATDAPVSGRKAINS
PPQVESLVLDLADLKSIDRFATELGKRVDRVDMLINNAGVMAVSRLERTK
DGFERHLGVNHLGHFHLTNRLFDLLLKGGSTREGVRIVNVASEAHRFGGL
DPQDPNYLRREYKKWEAYGQSKLANILFTRELHRRLAEKGLDKRILAVCC
HPGVVRTELGRYLIDDIPSVGKVALAPLALAGWYFTKSPKQGSQTQVYLA
ASPTLKEEAEQGAAVGGTYFSDCRPKKTTKEAEDLALAGELWKLSEKLTG
SSFSV back to topmRNA from alignment at KK037260.1:26451..28487+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna10024 ID=rna10024|Name=rna10024|organism=Nannochloropsis gaditana|type=mRNA|length=2037bp|location=Sequence derived from alignment at KK037260.1:26451..28487+ (Nannochloropsis gaditana)
ATCAAGACACACAGACTGCTCCAAACCCACTttcacctcctgcctcccct
tcatcaGCCCACCCTCTTAGGTTGCAATGAGTATCTCGACAAATACGCCT
TCAATCAGGCGCCAGCGTGGTATCGAGCGGATGCTTTTGGCAGTCCTGTC
CCTTGGTACAGTGTTGGTGCAAGCCAaagctttctccttccacggcggcg
gaggggtaGGGTCCTGCGCTACCAAGGTAGGGAGCAGGTTTGTAGTCCcc
actctcttttctccgGGCTGCATGAGTATGGCAAGGCCCGTCACTCCGCT
GCTGGCAAGTCTGCGAGGCGGGGCGACAAATggtgcggagggcgggcgcg
aTGTGGCTTCTTCCAGGGTACGCGTGCGGGAAGTACGTCGGAATGGGTAT
ACGGCGGACGGGCGCCGACGTCTCTTGTCCATGCGAGAGCTCTTCGGCCA
CCAAGAGGGCAGTCCGGAGGGAAATGACTCCTCTGGAGGGCTTTTTTCGG
CCGCGGGGTCCCAAAAACTCTTCTCGAGGGATGGGGCGTTACGTCTGGTG
GGGTACGCGGCCGTCGCCTACATTGGCAAACAGGTGTTCAACGGCGGGCG
GTACGACGAAAACCCGGATTTGGCGGGAAGGGTGGCGGTCATCACGGGTG
GGAACACAGGAATTGGCAAAGAAACGGCCATCCGTCTGGCCAGTATGGGC
GCCCGGGTCTTAATCGCTTGCCGCAATccggagaaaggagagacggCGGT
CCGAGACATCCTcgacgccgtctcccccccatccgcaACCGACGCGCCCG
TcagtgggaggaaagccaTCAATTCTCCCCCGCAGGTGGAGAGTCTCGTG
TTGGACCTGGCGGATTTAAAGAGCATCGACCGTTTCGCGACGGAGTTGGG
CAAACGGGTGGATCGGGTGGACATGCTCATCAACAACGCCGGGGTCATGG
CGGTTAGCCGCCTGGAGAGAACCAAGGACGGCTTCGAACGTCACTTGGGC
GTGAACCATCTCGGACATTTCCACCTGACCAACCGTCTCTTCGACCTGTT
GCTCAAGGGCGGATCCACCCGGGAGGGAGTCCGCATCGTGAACGTGGCGA
GTGAAGCCCACCGGTTTGGGGGCCTCGATCCTCAAGACCCCAATTATCTC
CGGCGCGAGTACAAGAAATGGGAGGCGTACGGACAGAGCAAACTTGCCAA
CATTTTATTCACCCGGGAATTGCACCGACGATTGGCAGAGAAAGGGCTGG
ACAAACGGATTTTGGCCGTCTGTTGCCACCCCGGCGTGGTCCGCACAGAA
CTGGGTCGGTATTTGATCGACGATATCCCCAGCGTAGGGAAAGTGGCCTT
GGCACCCTTGGCCTTGGCAGGCTGGTATTTTACCAAGAGTCCTAAGCAAG
GGTGAGAGGGCGGGTCTGGCGGGTGGGATGGCAGGGGAGGCGCtgaatgg
gggggggggttgaggagAGAGATTACCGCGTGCGAGCCGGGGTCGAagtt
ttcttctttctcaaTTCCAACATATATTCTCCACCATTGTTTTGTGAATG
CTTTACTTGTGTGCTTACGGCAATCATCTTGCACGGTCGCGGACACTGCA
CGGACCTGGGTGGCCatctctgtctcctcttctttggcACTCGACGAGCC
CCCAAGGGAGGCACAAGGGTCCCCGCGTTCGTGTTTTCCTCACGCCTGGA
TGTCCTGCTTTGCTATATCCACAGGTCGCAGACACAAGTGTACCTCGCGG
CGAGCCCCActttgaaagaggaagccgagcaAGGGGCCGCGGTGGGGGGC
ACGTATTTCTCAGACTGTCGGCCGAAGAAGACGACCAAGGAAGCAGAAGA
CTTGGCGTTGGCGGGGGAGCTGTGGAAGCTTAGTGAAAAACTGACCGGCT
CTTCGTTTTCCGTTTAGTGTGTGGGAAGTCGGACAGTCCGGGGCCGTGAG
AGATGCTTGGGCACAGGCCATTGGAGATTTGGCGTGGCTGGTGGGCTTTC
AAAGTCAATTGCAAGTGAACAGAGCAAAGAAATTTCA back to topCoding sequence (CDS) from alignment at KK037260.1:26451..28487+ >rna10024 ID=rna10024|Name=rna10024|organism=Nannochloropsis gaditana|type=CDS|length=3036bp|location=Sequence derived from alignment at KK037260.1:26451..28487+ (Nannochloropsis gaditana)
ATGAGTATCTCGACAAATACGCCTTCAATCAGGCGCCAGCGTGGTATCGA
GCGGATGCTTTTGGCAGTCCTGTCCCTTGGTACAGTGTTGGTGCAAGCCA
aagctttctccttccacggcggcggaggggtaGGGTCCTGCGCTACCAAG
GTAGGGAGCAGGTTTGTAGTCCccactctcttttctccgGGCTGCATGAG
TATGGCAAGGCCCGTCACTCCGCTGCTGGCAAGTCTGCGAGGCGGGGCGA
CAAATggtgcggagggcgggcgcgaTGTGGCTTCTTCCAGGGTACGCGTG
CGGGAAGTACGTCGGAATGGGTATACGGCGGACGGGCGCCGACGTCTCTT
GTCCATGCGAGAGCTCTTCGGCCACCAAGAGGGCAGTCCGGAGGGAAATG
ACTCCTCTGGAGGGCTTTTTTCGGCCGCGGGGTCCCAAAAACTCTTCTCG
AGGGATGGGGCGTTACGTCTGGTGGGGTACGCGGCCGTCGCCTACATTGG
CAAACAGGTGTTCAACGGCGGGCGGTACGACGAAAACCCGGATTTGGCGG
GAAGGGTGGCGGTCATCACGGGTGGGAACACAGGAATTGGCAAAGAAACG
GCCATCCGTCTGGCCAGTATGGGCGCCCGGGTCTTAATCGCTTGCCGCAA
TccggagaaaggagagacggCGGTCCGAGACATCCTcgacgccgtctccc
ccccatccgcaACCGACGCGCCCGTcagtgggaggaaagccaTCAATTCT
CCCCCGCAGGTGGAGAGTCTCGTGTTGGACCTGGCGGATTTAAAGAGCAT
CGACCGTTTCGCGACGGAGTTGGGCAAACGGGTGGATCGGGTGGACATGC
TCATCAACAACGCCGGGGTCATGGCGGTTAGCCGCCTGGAGAGAACCAAG
GACGGCTTCGAACGTCACTTGGGCGTGAACCATCTCGGACATTTCCACCT
GACCAACCGTCTCTTCGACCTGTTGCTCAAGGGCGGATCCACCCGGGAGG
GAGTCCGCATCGTGAACGTGGCGAGTGAAGCCCACCGGTTTGGGGGCCTC
GATCCTCAAGACCCCAATTATCTCCGGCGCGAGTACAAGAAATGGGAGGC
GTACGGACAGAGCAAACTTGCCAACATTTTATTCACCCGGGAATTGCACC
GACGATTGGCAGAGAAAGGGCTGGACAAACGGATTTTGGCCGTCTGTTGC
CACCCCGGCGTGGTCCGCACAGAACTGGGTCGGTATTTGATCGACGATAT
CCCCAGCGTAGGGAAAGTGGCCTTGGCACCCTTGGCCTTGGCAGGCTGGT
ATTTTACCAAGAGTCCTAAGCAAGGGTCGCAGACACAAGTGTACCTCGCG
GCGAGCCCCActttgaaagaggaagccgagcaAGGGGCCGCGGTGGGGGG
CACGTATTTCTCAGACTGTCGGCCGAAGAAGACGACCAAGGAAGCAGAAG
ACTTGGCGTTGGCGGGGGAGCTGTGGAAGCTTAGTGAAAAACTGACCGGC
TCTTCGTTTTCCGTTTAGATGAGTATCTCGACAAATACGCCTTCAATCAG
GCGCCAGCGTGGTATCGAGCGGATGCTTTTGGCAGTCCTGTCCCTTGGTA
CAGTGTTGGTGCAAGCCAaagctttctccttccacggcggcggaggggta
GGGTCCTGCGCTACCAAGGTAGGGAGCAGGTTTGTAGTCCccactctctt
ttctccgGGCTGCATGAGTATGGCAAGGCCCGTCACTCCGCTGCTGGCAA
GTCTGCGAGGCGGGGCGACAAATggtgcggagggcgggcgcgaTGTGGCT
TCTTCCAGGGTACGCGTGCGGGAAGTACGTCGGAATGGGTATACGGCGGA
CGGGCGCCGACGTCTCTTGTCCATGCGAGAGCTCTTCGGCCACCAAGAGG
GCAGTCCGGAGGGAAATGACTCCTCTGGAGGGCTTTTTTCGGCCGCGGGG
TCCCAAAAACTCTTCTCGAGGGATGGGGCGTTACGTCTGGTGGGGTACGC
GGCCGTCGCCTACATTGGCAAACAGGTGTTCAACGGCGGGCGGTACGACG
AAAACCCGGATTTGGCGGGAAGGGTGGCGGTCATCACGGGTGGGAACACA
GGAATTGGCAAAGAAACGGCCATCCGTCTGGCCAGTATGGGCGCCCGGGT
CTTAATCGCTTGCCGCAATccggagaaaggagagacggCGGTCCGAGACA
TCCTcgacgccgtctcccccccatccgcaACCGACGCGCCCGTcagtggg
aggaaagccaTCAATTCTCCCCCGCAGGTGGAGAGTCTCGTGTTGGACCT
GGCGGATTTAAAGAGCATCGACCGTTTCGCGACGGAGTTGGGCAAACGGG
TGGATCGGGTGGACATGCTCATCAACAACGCCGGGGTCATGGCGGTTAGC
CGCCTGGAGAGAACCAAGGACGGCTTCGAACGTCACTTGGGCGTGAACCA
TCTCGGACATTTCCACCTGACCAACCGTCTCTTCGACCTGTTGCTCAAGG
GCGGATCCACCCGGGAGGGAGTCCGCATCGTGAACGTGGCGAGTGAAGCC
CACCGGTTTGGGGGCCTCGATCCTCAAGACCCCAATTATCTCCGGCGCGA
GTACAAGAAATGGGAGGCGTACGGACAGAGCAAACTTGCCAACATTTTAT
TCACCCGGGAATTGCACCGACGATTGGCAGAGAAAGGGCTGGACAAACGG
ATTTTGGCCGTCTGTTGCCACCCCGGCGTGGTCCGCACAGAACTGGGTCG
GTATTTGATCGACGATATCCCCAGCGTAGGGAAAGTGGCCTTGGCACCCT
TGGCCTTGGCAGGCTGGTATTTTACCAAGAGTCCTAAGCAAGGGTCGCAG
ACACAAGTGTACCTCGCGGCGAGCCCCActttgaaagaggaagccgagca
AGGGGCCGCGGTGGGGGGCACGTATTTCTCAGACTGTCGGCCGAAGAAGA
CGACCAAGGAAGCAGAAGACTTGGCGTTGGCGGGGGAGCTGTGGAAGCTT
AGTGAAAAACTGACCGGCTCTTCGTTTTCCGTTTAG back to top
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