rna10023, rna10023 (mRNA) Nannochloropsis gaditana

Overview
Namerna10023
Unique Namerna10023
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length436
Alignment locationKK037260.1:24717..25787 +

Link to JBrowse

Properties
Property NameValue
Productexosome complex exonuclease rrp42
Orig transcript idgnl|cribi|Naga_100704g1.5541.mrna
Orig protein idgnl|cribi|Naga_100704g1.5541
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:24717..25787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100704g1gene9725Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10023rna10023-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20680.1cds9992Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10023 ID=rna10023|Name=rna10023|organism=Nannochloropsis gaditana|type=mRNA|length=436bp
CTCCTCCTCCTCACCCCTTTGTCCCCCTCCATCTCCCACCTGCCCCTTTT
TCTCACCGCCCACGATGACGCCGAGGCCCTGTGGACCCAACACCGGCAAC
TCGCAACTCCTGCTCGCGGCCCTTCATCCCTGCCTCCCTCCCCCCTTTCC
TCCTCCCCCGCCGTGGCCCCGCTGGGCCCAGGCCAAGGTCGGAGGGGGAA
GGACAAGAGAGAGGGGGGCGAGGGGACGCAGGAGGCTTCTTCCCTCATCC
TTCACTTGCCTGGAGCTTTGATCATGGACGAGAAGGTGTTGGTGGAGTGT
TTGGGCATGATCCCGTTGTGCGTGCCCCCGACGTGGACGAACGCGGGGGA
TGAGGTGCGTTTTTTCAAATTTCGCAAAATTTGAATTCAAACTTGATTTT
CTAAAAAGTTTGGGGAGGGGGCAGTGTTTATTGTGA
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protein sequence of rna10023

>rna10023-protein ID=rna10023-protein|Name=rna10023|organism=Nannochloropsis gaditana|type=polypeptide|length=318bp
MLSQARSRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSAR
VILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGRE
VEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGN
ILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKP
LPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGL
YKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGS
SKLRCEAGTWRRDACVGE
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mRNA from alignment at KK037260.1:24717..25787+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10023 ID=rna10023|Name=rna10023|organism=Nannochloropsis gaditana|type=mRNA|length=1071bp|location=Sequence derived from alignment at KK037260.1:24717..25787+ (Nannochloropsis gaditana)
CTATTCGCAGGATCGACCTTGTGTACGACGCATCCCACTCGGTAGTACCC
CTTTTCCCGACGCAGACAGACCACCAGGAAGAAAATGCTTTCTCAGGCAA
GATCCCGCACGGAGCTTGCTTTTATGGAAGCGGGCGTGGAGCAAGACGTC
AGGGCGGATGGACGTCGGCGCGTCGATTATCGGGATATCAGCGTCACCGT
CGATGTCGTACCCTCTAGCCACGGCTCTGCCAGAGTGATCCTAGGTCACG
ACGCCACGGAGGTTTTGGCTGTGGTGAAAGCCGATCTTTCGCAACCTTCA
TACGAACGAGCAAGGTGCGGCACGCTCGAGTTGAATGTGGAAGTGTCTCC
TTTGGCTTTGCTTTATAAAGAGACAGgtcgggaggtggaggatttAAATG
CGGAGTTGACCACGGCATTTGAGTCCTTTCTCGTGGAGTCTGGGGCCTTA
GACATGGAGGCATTGTGTATTACTCCTGGGAAGTACGCCTGGACCATATA
TCTCGACGTGATTGTGTTGGAGGGACAGGGCAATATCTTGGATGCGGTCT
CTTTGGCGGCCTATGCCGCCTTGCGAACCGCAGCGTTGCCTGGTGTCGAC
GCCATTTCCGGTGGACTGGACTCGGCTAACAACCCCATCGAAGATTTCGA
GCTGTCCTCCACCGACATCCTGGACGCGAAACCTTTGCCCGTGCAAAACC
TGCCCATCTGCATCACCCTAAACCGTATCGGGAACTTCGTGGTGGTAGAc
acggcggcggaggaagaggcagaaggCGGGGTTCAAGCACGCTTGACTGT
CGCAGTGGATGAGACAGGGCATATTTGCGGGTTGTACAAAGGGGCTGGGG
GTGGTTTCCCGGTGGGGGAGATGCATACATTGGCCCAACATGCCGTGCCC
ATTGCCAAGAAGGTTTTGGAGGGGCTGAAAGCCGCCATCGGCTTGAcgga
caagaaagagaaaaagggtATCGAGAAAGGTTCCTCGAAGTTGCGTTGTG
AAGCAGGCACTTGGAGAAGAGATGCGTGCGTCGGAGAATAAAATGGAAGG
AAGCACCAAAGCACTGAATGC
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Coding sequence (CDS) from alignment at KK037260.1:24717..25787+

>rna10023 ID=rna10023|Name=rna10023|organism=Nannochloropsis gaditana|type=CDS|length=957bp|location=Sequence derived from alignment at KK037260.1:24717..25787+ (Nannochloropsis gaditana)
ATGCTTTCTCAGGCAAGATCCCGCACGGAGCTTGCTTTTATGGAAGCGGG
CGTGGAGCAAGACGTCAGGGCGGATGGACGTCGGCGCGTCGATTATCGGG
ATATCAGCGTCACCGTCGATGTCGTACCCTCTAGCCACGGCTCTGCCAGA
GTGATCCTAGGTCACGACGCCACGGAGGTTTTGGCTGTGGTGAAAGCCGA
TCTTTCGCAACCTTCATACGAACGAGCAAGGTGCGGCACGCTCGAGTTGA
ATGTGGAAGTGTCTCCTTTGGCTTTGCTTTATAAAGAGACAGgtcgggag
gtggaggatttAAATGCGGAGTTGACCACGGCATTTGAGTCCTTTCTCGT
GGAGTCTGGGGCCTTAGACATGGAGGCATTGTGTATTACTCCTGGGAAGT
ACGCCTGGACCATATATCTCGACGTGATTGTGTTGGAGGGACAGGGCAAT
ATCTTGGATGCGGTCTCTTTGGCGGCCTATGCCGCCTTGCGAACCGCAGC
GTTGCCTGGTGTCGACGCCATTTCCGGTGGACTGGACTCGGCTAACAACC
CCATCGAAGATTTCGAGCTGTCCTCCACCGACATCCTGGACGCGAAACCT
TTGCCCGTGCAAAACCTGCCCATCTGCATCACCCTAAACCGTATCGGGAA
CTTCGTGGTGGTAGAcacggcggcggaggaagaggcagaaggCGGGGTTC
AAGCACGCTTGACTGTCGCAGTGGATGAGACAGGGCATATTTGCGGGTTG
TACAAAGGGGCTGGGGGTGGTTTCCCGGTGGGGGAGATGCATACATTGGC
CCAACATGCCGTGCCCATTGCCAAGAAGGTTTTGGAGGGGCTGAAAGCCG
CCATCGGCTTGAcggacaagaaagagaaaaagggtATCGAGAAAGGTTCC
TCGAAGTTGCGTTGTGAAGCAGGCACTTGGAGAAGAGATGCGTGCGTCGG
AGAATAA
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Synonyms
Publications