EWM20680.1, cds9992 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20680.1 vs. NCBI_GenBank
Match: gi|585100498|gb|EWM20680.1| (exosome complex exonuclease rrp42 [Nannochloropsis gaditana]) HSP 1 Score: 643.654 bits (1659), Expect = 0.000e+0 Identity = 318/318 (100.00%), Postives = 318/318 (100.00%), Query Frame = 0 Query: 1 MLSQARSRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKLRCEAGTWRRDACVGE 318 MLSQARSRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKLRCEAGTWRRDACVGE Sbjct: 1 MLSQARSRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKLRCEAGTWRRDACVGE 318
BLAST of EWM20680.1 vs. NCBI_GenBank
Match: gi|553189457|ref|XP_005855007.1| (exosome complex rna-binding protein rrp42, partial [Nannochloropsis gaditana CCMP526] >gi|422294053|gb|EKU21353.1| exosome complex rna-binding protein rrp42, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 384.415 bits (986), Expect = 7.540e-133 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0 Query: 131 PGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKLRCEAGTWRRDACVGE 318 PGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKLRCEAGTWRRDACVGE Sbjct: 1 PGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKGIEKGSSKLRCEAGTWRRDACVGE 188
BLAST of EWM20680.1 vs. NCBI_GenBank
Match: gi|831787279|ref|XP_012758378.1| (hypothetical protein SAMD00019534_009570 [Acytostelium subglobosum LB1] >gi|735859010|dbj|GAM17782.1| hypothetical protein SAMD00019534_009570 [Acytostelium subglobosum LB1]) HSP 1 Score: 174.866 bits (442), Expect = 3.559e-48 Identity = 101/267 (37.83%), Postives = 151/267 (56.55%), Query Frame = 0 Query: 7 SRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGF---PVGEMHTLAQHA 270 S +E +++ GVE VRADGR R+DYR + V + + GSAR++L D T V+ +KAD++ P+ + G L +NV+ P A E G+ E +N EL E L + ALD+ +LCI PGKY W +Y+D IVL+ GN+ DA+S+A AAL LP + + G + +FE+S D + + N+PIC+TL +IG V+D+ EEE + ARLT+ V+ +IC + KG G + +M T+A+ A Sbjct: 96 SPSETYYIQQGVENGVRADGRTRLDYRHFELDVGEIAHACGSARILL--DNTHVIVGIKADIASPTSDAPNHGMLNVNVDCCPSASPEFE-GKGAEYINVELAKQLERLLTQGNALDLASLCIVPGKYCWNLYIDAIVLDSGGNLFDALSIATRAALYNTRLPQIKIVQGEHEQV-----EFEVSE-DPESYSSVSIDNVPICVTLTKIGTQFVLDSTLEEEL--CMDARLTIGVNRRSNICSIQKGGVSGLDSSTINQMITVAKQA 351
BLAST of EWM20680.1 vs. NCBI_GenBank
Match: gi|953496279|emb|CEG41879.1| (exosome complex exonuclease rrp42-like protein [Plasmopara halstedii]) HSP 1 Score: 169.474 bits (428), Expect = 4.703e-47 Identity = 99/289 (34.26%), Postives = 156/289 (53.98%), Query Frame = 0 Query: 7 SRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAIGLTDKKEKKG 295 S +E ++ GV DVRADGR R+ YR+IS+ ++ S+GSAR + T+VLA VK +++ P E G +++ V P ++ K GR VE+LN EL+ L ++E CI PG+ W+I +DV+V E GN+ D +S+A YAAL P V + G++S + IE D K + Q+ PIC+TL++IG++ + D+ EEE A+++VAVD G +CG+ K G + EM + A +K++ L+ A+ ++ K Sbjct: 5 SASEKKYIVEGVAADVRADGRDRLSYRNISIETSLLSQSNGSARASIEASGTDVLASVKLEVASPLPEAPNAGIVQVCVSCCP-SISAKLYGRAVEELNVELSQLMTRLLCSHSNAELEKYCIIPGESVWSINIDVMVFESTGNVPDIISIAIYAALNDTVFPSVRLV--GVESEDKTIE----VDMDPAAGKLMMAQHWPICVTLSKIGDYFITDSMQEEEL--CTTAQMSVAVDPEGSVCGVQKSGTGAIELEEMQQMIDEACARSKELFHLLQNALSEQRNRDIKA 284
BLAST of EWM20680.1 vs. NCBI_GenBank
Match: gi|301097627|ref|XP_002897908.1| (exosome complex exonuclease RRP42-like protein [Phytophthora infestans T30-4] >gi|262106656|gb|EEY64708.1| exosome complex exonuclease RRP42-like protein [Phytophthora infestans T30-4]) HSP 1 Score: 167.548 bits (423), Expect = 3.187e-46 Identity = 97/279 (34.77%), Postives = 153/279 (54.84%), Query Frame = 0 Query: 7 SRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAI 285 S +E ++ GV DVRADGR R+ YR +S+ ++ S+GSAR L T+VLA VK +++ P E G ++++V P ++ K GR VE+LN EL+ L + ++E CI PG+ W+I +DV+V E GN+ D +S+A YAAL P V + G++ + IE TD K + Q PIC+TL++IG++ + D EEE A+++VAV+ G++CG+ K G + EM + A +K + + L+ A+ Sbjct: 5 SSSEKDYIVEGVAADVRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVASPLPEDPNAGIVQVDVSCCP-SVSAKLYGRAVEELNVELSQLMTRLLCSCPSAELEKYCIIPGESVWSISIDVMVFESSGNLPDVISMAIYAALNDTIFPSVRLV--GVEGEDKTIE----VDTDPAAGKLMMAQQWPICVTLSKIGDYFITDPLQEEEL--CTTAQMSVAVNPDGNVCGVQKSGNGSIEMEEMQQMIDEACARSKDLFKLLQKAL 274
BLAST of EWM20680.1 vs. NCBI_GenBank
Match: gi|470238854|ref|XP_004351185.1| (hypothetical protein DFA_10935 [Dictyostelium fasciculatum] >gi|328866292|gb|EGG14677.1| hypothetical protein DFA_10935 [Dictyostelium fasciculatum]) HSP 1 Score: 166.777 bits (421), Expect = 4.086e-46 Identity = 98/268 (36.57%), Postives = 150/268 (55.97%), Query Frame = 0 Query: 1 MLSQARSRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQ 268 M+ Q+ S +E+ F++ GVE ++R DGR R+DYR + + + + GS+R+IL T +L +KAD+S P G+L +V+ P A E G+ + +N EL E + +S ++D+ LCI PGKY W +Y+D IVL+ GN+ DA+S+ AAL LP + G + DFE+S D + L + +PI +TL IGN VVD + EEE + AR+T+ V++ G+ICG+ KG G + HT+ Q Sbjct: 1 MVIQSLSPSEIYFIQQGVENNLRNDGRTRLDYRPFELDIGEISHAVGSSRIILAD--THILVGIKADISAPDPLTPNKGSLTFSVDCCPSASPEYE-GKGADYINIELAKQLERVMKDSNSMDLGGLCIMPGKYCWNLYIDAIVLDSGGNLFDALSIGVRAALANTRLPTIRITQGEYSTV-----DFEVSD-DPEAMQSLDIDGVPINVTLTTIGNQFVVDCSGEEEQ--CMDARMTIGVNKRGNICGIQKGGVAGI---DAHTINQ 254
BLAST of EWM20680.1 vs. NCBI_GenBank
Match: gi|675187863|ref|XP_008902816.1| (hypothetical protein PPTG_09557 [Phytophthora parasitica INRA-310] >gi|567965630|gb|ETK91100.1| hypothetical protein L915_05241 [Phytophthora parasitica] >gi|568023583|gb|ETL97638.1| hypothetical protein L917_05081 [Phytophthora parasitica] >gi|568053989|gb|ETM50795.1| hypothetical protein L914_05197 [Phytophthora parasitica] >gi|568097146|gb|ETN11890.1| hypothetical protein PPTG_09557 [Phytophthora parasitica INRA-310] >gi|570955873|gb|ETP20946.1| hypothetical protein F441_05391 [Phytophthora parasitica CJ01A1] >gi|570991049|gb|ETP48900.1| hypothetical protein F442_05434 [Phytophthora parasitica P10297]) HSP 1 Score: 166.392 bits (420), Expect = 8.608e-46 Identity = 97/279 (34.77%), Postives = 152/279 (54.48%), Query Frame = 0 Query: 7 SRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAI 285 S +E ++ GV DVRADGR R+ YR +S+ ++ S+GSAR L T+VLA VK +++ P E G +++ V P ++ K GR VE+LN EL+ L + ++E CI PG+ W+I +DV+V E GN+ D +S+A YAAL P V + G++ + IE TD K + Q PIC+TL++IG++ + D EEE A+++VAV+ G +CG+ K G + EM + A +K++ + L+ A+ Sbjct: 5 SASEKKYIVEGVAADVRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVASPLPEAPNAGIVQVAVSCCP-SVSAKLHGRAVEELNVELSQLMTRLLCSCPSAELEKYCIIPGESVWSISIDVMVFESSGNLPDVISMAIYAALNDTVFPSVRLV--GVEGEDKTIE----VDTDPAAGKLMMAQQWPICVTLSKIGDYFITDPLQEEEL--CTTAQMSVAVNPEGSVCGVQKSGNGAIEMEEMQQMIDEACARSKELFKLLQEAL 274
BLAST of EWM20680.1 vs. NCBI_GenBank
Match: gi|970643646|gb|KUF84816.1| (Exosome complex component RRP42 [Phytophthora nicotianae]) HSP 1 Score: 166.007 bits (419), Expect = 1.010e-45 Identity = 97/279 (34.77%), Postives = 152/279 (54.48%), Query Frame = 0 Query: 7 SRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAI 285 S +E ++ GV DVRADGR R+ YR +S+ ++ S+GSAR L T+VLA VK +++ P E G +++ V P ++ K GR VE+LN EL+ L + ++E CI PG+ W+I +DV+V E GN+ D +S+A YAAL P V + G++ + IE TD K + Q PIC+TL++IG++ + D EEE A+++VAV+ G +CG+ K G + EM + A +K++ + L+ A+ Sbjct: 5 SASEKKYIVEGVAADVRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVASPLPEAPNAGIVQVAVSCCP-SVSAKLHGRAVEELNVELSQLMTRLLXSCPSAELEKYCIIPGESVWSISIDVMVFESSGNLPDVISMAIYAALNDTVFPSVRLV--GVEGEDKTIE----VDTDPAAGKLMMAQQWPICVTLSKIGDYFITDPLQEEEL--CTTAQMSVAVNPEGSVCGVQKSGNGAIEMEEMQQMIDEACARSKELFKLLQEAL 274
BLAST of EWM20680.1 vs. NCBI_GenBank
Match: gi|570331977|gb|ETO79925.1| (hypothetical protein F444_05429 [Phytophthora parasitica P1976]) HSP 1 Score: 166.007 bits (419), Expect = 1.077e-45 Identity = 97/279 (34.77%), Postives = 152/279 (54.48%), Query Frame = 0 Query: 7 SRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAI 285 S +E ++ GV DVRADGR R+ YR +S+ ++ S+GSAR L T+VLA VK +++ P E G +++ V P ++ K GR VE+LN EL+ L + ++E CI PG+ W+I +DV+V E GN+ D +S+A YAAL P V + G++ + IE TD K + Q PIC+TL++IG++ + D EEE A+++VAV+ G +CG+ K G + EM + A +K++ + L+ A+ Sbjct: 5 SASEKKYIVEGVAADVRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVASPLPEAPNAGIVQVVVSCCP-SVSAKLHGRAVEELNVELSQLMTRLLCSCPSAELEKYCIIPGESVWSISIDVMVFESSGNLPDVISMAIYAALNDTVFPSVRLV--GVEGEDKTIE----VDTDPAAGKLMMAQQWPICVTLSKIGDYFITDPLQEEEL--CTTAQMSVAVNPEGSVCGVQKSGNGAIEMEEMQQMIDEACARSKELFKLLQEAL 274
BLAST of EWM20680.1 vs. NCBI_GenBank
Match: gi|567994314|gb|ETL44473.1| (hypothetical protein L916_05196 [Phytophthora parasitica]) HSP 1 Score: 163.31 bits (412), Expect = 1.036e-44 Identity = 96/279 (34.41%), Postives = 151/279 (54.12%), Query Frame = 0 Query: 7 SRTELAFMEAGVEQDVRADGRRRVDYRDISVTVDVVPSSHGSARVILGHDATEVLAVVKADLSQPSYERARCGTLELNVEVSPLALLYKETGREVEDLNAELTTAFESFLVESGALDMEALCITPGKYAWTIYLDVIVLEGQGNILDAVSLAAYAALRTAALPGVDAISGGLDSANNPIEDFELSSTDILDAKPLPVQNLPICITLNRIGNFVVVDTAAEEEAEGGVQARLTVAVDETGHICGLYKGAGGGFPVGEMHTLAQHAVPIAKKVLEGLKAAI 285 S +E ++ GV DVRADGR R+ YR +S+ ++ S+GSAR L T+VLA VK +++ P E G +++ V P ++ K GR VE+LN EL+ L + ++E CI PG+ W+I +DV+V E GN+ D +S+A YAAL P V + G++ + IE TD K + Q PIC+T ++IG++ + D EEE A+++VAV+ G +CG+ K G + EM + A +K++ + L+ A+ Sbjct: 5 SASEKKYIVEGVAADVRADGRDRLSYRSLSLETSLLAQSNGSARASLEASGTDVLASVKLEVASPLPEAPNAGIVQVAVSCCP-SVSAKLHGRAVEELNVELSQLMTRLLCSCPSAELEKYCIIPGESVWSISIDVMVFESSGNLPDVISMAIYAALNDTVFPSVRLV--GVEGEDKTIE----VDTDPAAGKLMMAQQWPICVTPSKIGDYFITDPLQEEEL--CTTAQMSVAVNPEGSVCGVQKSGNGAIEMEEMQQMIDEACARSKELFKLLQEAL 274 The following BLAST results are available for this feature:
BLAST of EWM20680.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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