rna10021, rna10021 (mRNA) Nannochloropsis gaditana

Overview
Namerna10021
Unique Namerna10021
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2026
Alignment locationKK037260.1:20750..21999 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101461g1.5894.mrna
Orig protein idgnl|cribi|Naga_101461g1.5894
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:20750..21999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101461g1gene9723Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10021rna10021-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20683.1cds9990Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10021 ID=rna10021|Name=rna10021|organism=Nannochloropsis gaditana|type=mRNA|length=2026bp
ACTCATCCTCCTGCTGCAATCGTTGTCATGCTGTGTGTGAAATTGGTTGG
GAAGCCGGAACATATTATTTAATCTTCCTTGAGCACATCGAGAACGGCGA
AGTGGAGCAAGGGAGAGAGGCGAGGCTGGGAATGGCTTGAGTGTCGCGAG
GAAAGAGGGGAAGTTACTGGTTTATCCCAATAAGAAAGACCTGCAATGGT
CCATAGAACCTCACAGATTAAGGTATTTTTCTTGTCTTCCTTGCCAGAAA
CAAAATGTGTTTTCCTTGCCAGGCAGCTTAATTGGAGCATTGGGGCGTCA
TGAAATAGACATCTGGGCACCGAGGAGGAGAGGCATTGAGTGCCCATTGA
TTGTGATCGACATCGGGTATTCCCAGGCCTTCCACCTGCCTAATACACTA
CCACATTCTTCTCTTTGATGTTTCTACAATGAATCTAGGGACGGGAGGGG
AGGCAGACATGGGGAGGGCGCGAACAAACACAGCCTTTAGGCCTCCAAGA
CCCCAGTCAAAGATTAAAAAGGACTCTAGAACATGCAATGAGCGGAGCCA
CACCAACAGAGAAACGGCCGATGTCGAAGACAAATTTGCAGGAAAAGAGG
AAAAGAATCTCCTCACAGACGCGGTGCGTCAGGCAGGCAAAGAGATTGAC
GGCCTTTTCAATGATCTGACTCAACGTAAACGAGTGGCAGCGGCCAGTGC
TACCACCAAGAAAGCTGTGGTGAAGATTAAAAAGGCAGATTCCCGTCCAC
CGTCCCATACGGTGGGAAAGAATGAAGGACGGAGGTACGACCCTCAGAGA
GACGATCCCGACGTCAGACCATGGAAACGCGATGCGACTGGCATGCCCAT
CTACGACCCTGAATCAATGCGTGTTGGAAAAGGTGGAGGCACGGCCTTGT
GTCCTTTCGACTGCAATTGCTGTTTTGGGTGACTGGGTAGCAGGCCCAGA
AAGCATCAAGAAATGAGGAAGCAGTCTTCCTTATTTTCGACAAGATGGCG
TCGTCTCAACCGTCTATCTTGCCCTCGTTGGCGATTGACAAGAACGCCTG
CGTTCCAGAATTTCTTGGTCTGACAAGGGCTGAGAAGTTCCTCGAAAAGC
CGGGAGTCCCAGACAAGAGTTTTGGAACGTGGTGTGCTGGTCGACCAAAA
AGGCACTGTGAAAAGGGTGCTGCATGAAAGACGCCGCAGGCAAAGGGGAT
TGGCTTCGTTACTATTACCCTGCCGTGGCGCAGCAGTTGATAGCCCCTCC
TCTGGCTGAGACAAGATCAAGATTTCCACGGATCACTTTTTAAATTTGAA
ATATCGTTCCGTAGCGTAAGTAAGAGATTTGGGTGAGCACCCGACATAGG
ATCAGGACCTGCTGCTTGCTGTACAGTAGCCTAAGATAAATATTTGCATG
AGATTGGAACTTTGCCACGGCATCGATCCTGAGATGGAAAAACAAAAAGT
TGGAAGGGCACAAAATGGGTTCTTGTAGCTATGAAAGTTGAAGAAGAATA
GCAAAAGGAAGGCTCCAAACAGCATACATGAGGCATGTAAGATCTACATT
GCTTGGCTATAAACCAGACAGTTCAGTTCTTGCGCTTAGGTTTGACATTC
TAACAGGCCCTTCTACAGACGAGTCAAGCCTCATGTCAAAACAATAGTAC
CGTTTTACGATAAAAACCTACGCGTGGGCGACGGGAAAACCCACACCTCC
CGGTAAAGAGATATGTTCTAAAACGTCAGTTGATGGAATAAAATCTCAAG
ATCAGAACATATGAGGATGAGGAATTGATGAGGAATGAGGAATGGAATGT
CAGCCCACAGTAATCTTTCTTTCTTTGTTACATAGTAAGGGAGAAGTTCT
TTTCAACAAGAACGGTCGTAATTTCACAAGATGTAGGGAATCGCTTGCTT
GCATGCATTTGGGCCGTTAATATAGTGGCAAACCTTTTTTGGGTATAGGA
TATCATGAGAGAACAATCTCGAATGCCGTGACAATACTCCACGGGGGAAA
TAAAACTCTCTACGACAGATACTATG
back to top

protein sequence of rna10021

>rna10021-protein ID=rna10021-protein|Name=rna10021|organism=Nannochloropsis gaditana|type=polypeptide|length=177bp
MRVLLQDVLVPDVVVKMQGVVKAAQFALPNPLAPLTRVMEVEGSDCLDLR
EKDGRDGVRGSKRRGVAAQDARILRLLAYFLAGKDEEENGRENWTTMEEK
ESEEKRVAGGGGDEGERDRGRGELFYGVRQQSGTVLDPEGRIAHFFAAMV
GVASPFLHPLHVSLPPSLPPSLAPSLL
back to top

mRNA from alignment at KK037260.1:20750..21999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10021 ID=rna10021|Name=rna10021|organism=Nannochloropsis gaditana|type=mRNA|length=1250bp|location=Sequence derived from alignment at KK037260.1:20750..21999- (Nannochloropsis gaditana)
CATTCCATCTTCCTAGGGGACCTCACCCCCCGCCACGACCCGTCCCTCTT
CGTCCGAGCCGTGCGGGACCTGTACGCCCTCTACCTCGCCCTCTATCCCT
CCCTCCCCCTCGTCATCAACCTGGACGGGTGGGTGCGAGGCCTTGGCCTG
GAACTCATGCGGGTGCTCCTCCAAGATGTGCTCGTGCCGGACGTGGTGGT
GAAAATGCAGGTGAGGGAGGGGGGAGAGGGAGGGAGGGAGGGAGGGAGGG
TGGAGTAAGATCTCTTCACATGCCTCGCGCGCATTCGAGTAGAAGGTGGC
AGGTATGCGACTGCATTATCCCGACACCACGTGTCTGCTTCTTGACCTTT
TGAGGACCTTGTCCTCTTTCCCCTCCTCCCTCCCTTCCTTCCTCCCTTCC
TTTCTTCCCCCCCCCCGTCCACATTGTAGGGTGTCGTGAAAGCCGCTCAA
TTCGCTCTCCCGAACCCTCTTGCGCCTCTAACTCGAGTGATGGAAGTGGA
AGGAAGCGACTGCCTTGATCTGAGGGAGAAGGACGGGAGGGACGGGGTAA
GGGGCAGCAAGAGAAGAGGAGTAGCGGCACAAGACGCGAGGATCTTAAGG
TTGCTGGCATATTTTTTGGCGGGAAAAGATGAGGAGGAAAATGGAAGGGA
AAACTGGACGACGATGGAAGAAAAGGAATCTGAGGAGAAGAGGGTGGCAG
GAGGAGGAGGAGATGAAGGAGAAAGGGATAGAGGCAGGGGAGAGCTCTTT
TATGGTGTCCGCCAGCAGAGTGGGACCGTACTTGACCCTGAAGGGAGGAT
CGCCCATTTTTTCGCAGCCATGGTAGGTGTCGCAAGCCCTTTCCTACACC
CCCTTCATGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCGCCTTCC
CTTCTCTAGCTATGCGTGCCTGCCGGCCCCGAGGCAAGCGTTTAATCTGT
TGCACACGCGTCTTCTGCCTGTTGGTTTTTTAACAAGATAGAATGTATTT
CTCGACTTATCCTGCGTGGCTGTGCATTTGAACCTTCCGGAACCTTCTTT
CCCTTTTGTGTCACCTCCAACTCGACTTTAAGTGTACCTCTTCCATCCCC
TTCCTCCCTTACTCCCTCCCTCCCCCAGACCCCCTACCGTATCCCCCTGC
ATCTGCTTCAATTGAGCGTTCTTCACGAGGAAGTCCCTTTCCACGAAATA
AATCGAGCGTTCAACGCCTCCCTTGTTGGCCTGCATGCCCGCCCTCCCTC
back to top

Coding sequence (CDS) from alignment at KK037260.1:20750..21999-

>rna10021 ID=rna10021|Name=rna10021|organism=Nannochloropsis gaditana|type=CDS|length=1068bp|location=Sequence derived from alignment at KK037260.1:20750..21999- (Nannochloropsis gaditana)
GGTGTCGTGAAAGCCGCTCAATTCGCTCTCCCGAACCCTCTTGCGCCTCT
AACTCGAGTGATGGAAGTGGAAGGAAGCGACTGCCTTGATCTGAGGGAGA
AGGACGGGAGGGACGGGGTAAGGGGCAGCAAGAGAAGAGGAGTAGCGGCA
CAAGACGCGAGGATCTTAAGGTTGCTGGCATATTTTTTGGCGGGAAAAGA
TGAGGAGGAAAATGGAAGGGAAAACTGGACGACGATGGAAGAAAAGGAAT
CTGAGGAGAAGAGGGTGGCAGGAGGAGGAGGAGATGAAGGAGAAAGGGAT
AGAGGCAGGGGAGAGCTCTTTTATGGTGTCCGCCAGCAGAGTGGGACCGT
ACTTGACCCTGAAGGGAGGATCGCCCATTTTTTCGCAGCCATGGTAGGTG
TCGCAAGCCCTTTCCTACACCCCCTTCATGTCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCGCGCCTTCCCTTCTCTAGATGCGGGTGCTCCTCCAAGA
TGTGCTCGTGCCGGACGTGGTGGTGAAAATGCAGGGTGTCGTGAAAGCCG
CTCAATTCGCTCTCCCGAACCCTCTTGCGCCTCTAACTCGAGTGATGGAA
GTGGAAGGAAGCGACTGCCTTGATCTGAGGGAGAAGGACGGGAGGGACGG
GGTAAGGGGCAGCAAGAGAAGAGGAGTAGCGGCACAAGACGCGAGGATCT
TAAGGTTGCTGGCATATTTTTTGGCGGGAAAAGATGAGGAGGAAAATGGA
AGGGAAAACTGGACGACGATGGAAGAAAAGGAATCTGAGGAGAAGAGGGT
GGCAGGAGGAGGAGGAGATGAAGGAGAAAGGGATAGAGGCAGGGGAGAGC
TCTTTTATGGTGTCCGCCAGCAGAGTGGGACCGTACTTGACCCTGAAGGG
AGGATCGCCCATTTTTTCGCAGCCATGGTAGGTGTCGCAAGCCCTTTCCT
ACACCCCCTTCATGTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCGCGC
CTTCCCTTCTCTAGATGCGGGTGCTCCTCCAAGATGTGCTCGTGCCGGAC
GTGGTGGTGAAAATGCAG
back to top
Synonyms
Publications