EWM20683.1, cds9990 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20683.1
Unique Name	cds9990
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037260.1:21790..21843 -
Alignment location	KK037260.1:21091..21570 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20683.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_101461g1.5894.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037260.1	supercontig	KK037260.1:21790..21843 -
KK037260.1	supercontig	KK037260.1:21091..21570 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM20683.1 vs. NCBI_GenBank
Match: gi|585100503|gb|EWM20683.1| (hypothetical protein Naga_101461g1 [Nannochloropsis gaditana])

HSP 1 Score: 355.14 bits (910), Expect = 7.739e-124
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0

Query:    1 MRVLLQDVLVPDVVVKMQGVVKAAQFALPNPLAPLTRVMEVEGSDCLDLREKDGRDGVRGSKRRGVAAQDARILRLLAYFLAGKDEEENGRENWTTMEEKESEEKRVAGGGGDEGERDRGRGELFYGVRQQSGTVLDPEGRIAHFFAAMVGVASPFLHPLHVSLPPSLPPSLAPSLL 177
            MRVLLQDVLVPDVVVKMQGVVKAAQFALPNPLAPLTRVMEVEGSDCLDLREKDGRDGVRGSKRRGVAAQDARILRLLAYFLAGKDEEENGRENWTTMEEKESEEKRVAGGGGDEGERDRGRGELFYGVRQQSGTVLDPEGRIAHFFAAMVGVASPFLHPLHVSLPPSLPPSLAPSLL
Sbjct:    1 MRVLLQDVLVPDVVVKMQGVVKAAQFALPNPLAPLTRVMEVEGSDCLDLREKDGRDGVRGSKRRGVAAQDARILRLLAYFLAGKDEEENGRENWTTMEEKESEEKRVAGGGGDEGERDRGRGELFYGVRQQSGTVLDPEGRIAHFFAAMVGVASPFLHPLHVSLPPSLPPSLAPSLL 177

The following BLAST results are available for this feature:

BLAST of EWM20683.1 vs. NCBI_GenBank

BLAST of EWM20683.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585100503\|gb\|EWM20683.1\|	7.739e-124	100.00	hypothetical protein Naga_101461g1 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna10021	rna10021	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications