rna10020, rna10020 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10020
Unique Name	rna10020
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2240
Alignment location	KK037260.1:11990..14481 +

Link to JBrowse

Properties


Property Name	Value
Product	Protein of unknown function DUF1764, eukaryotic
Orig transcript id	gnl\|cribi\|Naga_100517g1.9943.mrna
Orig protein id	gnl\|cribi\|Naga_100517g1.9943
Gbkey	mRNA
Note	encoded by transcript variant 1; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037260.1	supercontig	KK037260.1:11990..14481 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100517g1	gene9721	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10020	rna10020-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20684.1	cds9989	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037260.1:11990..14481+
coding sequence from alignment at KK037260.1:11990..14481+

mRNA sequence

>rna10020 ID=rna10020|Name=rna10020|organism=Nannochloropsis gaditana|type=mRNA|length=2240bp
ACTCATCCTCCTGCTGCAATCGTTGTCATGCTGTGTGTGAAATTGGTTGG
GAAGCCGGAACATATTATTTAATCTTCCTTGAGCACATCGAGAACGGCGA
AGTGGAGCAAGGGAGAGAGGCGAGGCTGGGAATGGCTTGAGTGTCGCGAG
GAAAGAGGGGAAGTTACTGGTTTATCCCAATAAGAAAGACCTGCAATGGT
CCATAGAACCTCACAGATTAAGGTATTTTTCTTGTCTTCCTTGCCAGAAA
CAAAATGTGTTTTCCTTGCCAGGCAGCTTAATTGGAGCATTGGGGCGTCA
TGAAATAGACATCTGGGCACCGAGGAGGAGAGGCATTGAGTGCCCATTGA
TTGTGATCGACATCGGGTATTCCCAGGCCTTCCACCTGCCTAATACACTA
CCACATTCTTCTCTTTGATGTTTCTACAATGAATCTAGGGACGGGAGGGG
AGGCAGACATGGGGAGGGCGCGAACAAACACAGCCTTTAGGCCTCCAAGA
CCCCAGTCAAAGATTAAAAAGGACTCTAGAACATGCAATGAGCGGAGCCA
CACCAACAGAGAAACGGCCGATGTCGAAGACAAATTTGCAGGAAAAGAGG
AAAAGAATCTCCTCACAGACGCGGTGCGTCAGGCAGGCAAAGAGATTGAC
GGCCTTTTCAATGATCTGACTCAACGTAAACGAGTGGCAGCGGCCAGTGC
TACCACCAAGAAAGCTGTGGTGAAGATTAAAAAGGCAGATTCCCGTCCAC
CGTCCCATACGGTGGGAAAGAATGAAGGACGGAGGTACGACCCTCAGAGA
GACGATCCCGACGTCAGACCATGTAAGTGGTAGGGCTGCTAAATGGCAAG
GGAGGCATCAAAGGGATGAACTTTGATCCGGGCAGCTGAAGATGAGACGC
AATCTTCCTTTAGAGAAAAAAAAGGTGTGGATGTTGCCATACACTGGCCG
AAGGCCTCTCGAGGCGACCATTACTCAGTGATCAGATTAAGGTGTAGGGA
CAACTGAACCATCGAGCGCTTTGCTTATTACCACAGGGAAACGCGATGCG
ACTGGCATGCCCATCTACGACCCTGAATCAATGCGTGTTGGAAAAGGTGG
AGGCACGGCCTTGTGTCCTTTCGACTGCAATTGCTGTTTTGGGTGACTGG
GTAGCAGGCCCAGAAAGCATCAAGAAATGAGGAAGCAGTCTTCCTTATTT
TCGACAAGATGGCGTCGTCTCAACCGTCTATCTTGCCCTCGTTGGCGATT
GACAAGAACGCCTGCGTTCCAGAATTTCTTGGTCTGACAAGGGCTGAGAA
GTTCCTCGAAAAGCCGGGAGTCCCAGACAAGAGTTTTGGAACGTGGTGTG
CTGGTCGACCAAAAAGGCACTGTGAAAAGGGTGCTGCATGAAAGACGCCG
CAGGCAAAGGGGATTGGCTTCGTTACTATTACCCTGCCGTGGCGCAGCAG
TTGATAGCCCCTCCTCTGGCTGAGACAAGATCAAGATTTCCACGGATCAC
TTTTTAAATTTGAAATATCGTTCCGTAGCGTAAGTAAGAGATTTGGGTGA
GCACCCGACATAGGATCAGGACCTGCTGCTTGCTGTACAGTAGCCTAAGA
TAAATATTTGCATGAGATTGGAACTTTGCCACGGCATCGATCCTGAGATG
GAAAAACAAAAAGTTGGAAGGGCACAAAATGGGTTCTTGTAGCTATGAAA
GTTGAAGAAGAATAGCAAAAGGAAGGCTCCAAACAGCATACATGAGGCAT
GTAAGATCTACATTGCTTGGCTATAAACCAGACAGTTCAGTTCTTGCGCT
TAGGTTTGACATTCTAACAGGCCCTTCTACAGACGAGTCAAGCCTCATGT
CAAAACAATAGTACCGTTTTACGATAAAAACCTACGCGTGGGCGACGGGA
AAACCCACACCTCCCGGTAAAGAGATATGTTCTAAAACGTCAGTTGATGG
AATAAAATCTCAAGATCAGAACATATGAGGATGAGGAATTGATGAGGAAT
GAGGAATGGAATGTCAGCCCACAGTAATCTTTCTTTCTTTGTTACATAGT
AAGGGAGAAGTTCTTTTCAACAAGAACGGTCGTAATTTCACAAGATGTAG
GGAATCGCTTGCTTGCATGCATTTGGGCCGTTAATATAGTGGCAAACCTT
TTTTGGGTATAGGATATCATGAGAGAACAATCTCGAATGCCGTGACAATA
CTCCACGGGGGAAATAAAACTCTCTACGACAGATACTATG

protein sequence of rna10020

>rna10020-protein ID=rna10020-protein|Name=rna10020|organism=Nannochloropsis gaditana|type=polypeptide|length=167bp
MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVE
DKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKI
KKADSRPPSHTVGKNEGRRYDPQRDDPDVRPWKRDATGMPIYDPESMRVG
KGGGTALCPFDCNCCFG

mRNA from alignment at KK037260.1:11990..14481+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10020 ID=rna10020|Name=rna10020|organism=Nannochloropsis gaditana|type=mRNA|length=2492bp|location=Sequence derived from alignment at KK037260.1:11990..14481+ (Nannochloropsis gaditana)
ACTCATCCTCCTGCTGCAATCGTTGTCATGCTGTGTGTGAAATTGGTTGG
GAAGCCGGAACATATTATTTAATCTTCCTTGAGCACATCGAGAACGGCGA
AGTGGagcaagggagagaggcgaggcTGGGAATGGCTTGAGTGTcgcgag
gaaagaggggaagtTACTGGTTTATCCCAATAAGAAAGACCTGCAATGGT
CCATAGAACCTCACAGATTAAGGTATTTTTCTTGTCTTCCTTGCCAGAAA
CAAAATGTGTTTTCCTTGCCAGGCAGCTTAATTGGAGCATTGGGGCGTCA
TGAAATAGACATCTGggcaccgaggaggagaggcattGAGTGCCCATTGA
TTGTGATCGACATCGGGTATTCCCAGGCCTTCCACCTGCCTAATACACTA
CCACATTCTTCTCTTTGATGTTTCTACAATGAATctagggacgggagggg
aggcagacatggggagggcgcgaacaAACACAGCCTTTAGGCCTCCAAGA
CCCCAGTCAAAGATTAAAAAGGACTCTAGAACATGCAATGAGCGGAGCCA
CACCAACAGAGAAACGGCCGATGTCGAAGACAAATTtgcaggaaaagagg
aaaaggtaCGCGAAATAAATGGCCGGCTTTTCGGGAATGCACGAAGCGTG
GGAAACAAGTAACAAGGCAAAGGACAGGTGGCAAACGTTTGAACGAGCCC
GGATCCGTCGCAgctgcagaaggaggggtctTGTTTTAAAAACAAGAAGG
GTGATATCAATGGCCCGAGTTTCCGACTGCTCTTGTACTTGCGTTTTCAC
AGAGCATAAAACGGGAACCAAACCCGTCATTTTCTTATTTGTCTCCTTCG
TATCCAGAATCTCCTCACAGACGCGGTGCGTCAGGCAGGCAAAGAGATTG
ACGGCCTTTTCAATGATCTGACTCAACGTAAACGAGTGGCAGCGGCCAGT
GCTACCACCAAGAAAGCTGTGGTGAAGATTAAAAAGGCAGATTCCCGTCC
ACCGTCCCATACGGTGGGAAAGAATGAAGGACGGAGGTACGACCCTCAGA
GAGACGATCCCGACGTCAGACCATGTAAGTGGTAGGGCTGCTAAATGGCA
AGGGAGGCATCAAAGGGATGAACTTTGATCCGGGCAGCTGAAGATGAGAC
GCAATCTTCCTTtagagaaaaaaaaggtgtGGATGTTGCCATACACTGGC
CGAAGGCCTCTCGAGGCGACCATTACTCAGTGATCAGATTAAGGTGTAGG
GACAACTGAACCATCGAGCGCTTTGCTTATTACCACAGGGAAACGCGATG
CGACTGGCATGCCCATCTACGACCCTGAATCAATGCGTGTTGGAAAAGGT
GGAGGCACGGCCTTGTGTCCTTTCGACTGCAATTGCTGTTTTGGGTGACT
GGGTAGCAGGCCCAGAAAGCATCAAGAAATGAGGAAGCAGTCTTCCTTAT
TTTCGACAAGATGGCGTCGTCTCAACCGTCTATCTTGCCCTCGTTGGCGA
TTGACAAGAACGCCTGCGTTCCAGAATTTCTTGGTCTGACAAGGGCTGAG
AAGTTCCTCGAAAAGCCGGGAGTCCCAGACAAGAGTTTTGGAACGTGGTG
TGCTGGTCGACCAAAAAGGCACTGTGAAAAGGGTGCTGCATGAAAGACGC
CGCAGGCAAAGGGGATTGGCTTCGTTACTATTACCCTGCCGTGGCGCAGC
AGTTGATAGCCCCTCCTCTGGCTGAGACAAGATCAAGATTTCCACGGATC
ACTTTTTAAATTTGAAATATCGTTCCGTAGCGTAAGTAAGAGATTTGGGT
GAGCACCCGACATAGGATCAGGACCTGCTGCTTGCTGTACAGTAGCCTAA
GATAAATATTTGCATGAGATTGGAACTTTGCCACGGCATCGATCCTGAGA
TGGAAAAACAAAAAGTTGGAAGGGCACAAAATGGGTTCTTGTAGCTATGA
AAGTTGAAGAAGAATAGCAAAAGGAAGGCTCCAAACAGCATACATGAGGC
ATGTAAGATCTACATTGCTTGGCTATAAACCAGACAGTTCAGTTCTTGCG
CTTAGGTTTGACATTCTAACAGGCCCTTCTACAGACGAGTCAAGCCTCAT
GTCAAAACAATAGTACCGTTTTACGATAAAAACCTACGCGTGGGCGACGG
GAAAACCCACACCTCCCGGTAAAGAGATATGTTCTAAAACGTCAGTTGAT
GGAATAAAATCTCAAGATCAGAACAtatgaggatgaggaattGATGAGGA
ATGAGGAATGGAATGTCAGCCCACAGTaatctttctttctttgttACATA
GTAAGGGAGAAGTTCTTTTCAACAAGAACGGTCGTAATTTCACAAGATGT
AGGGAATCGCTTGCTTGCATGCATTTGGGCCGTTAATATAGTGGCAAACC
TTTTTTGGGTATAGGATATCATGAGAGAACAATCTCGAATGCCGTGACAA
TACTCCACGGGGGAAATAAAACTCTCTACGACAGATACTATG

Coding sequence (CDS) from alignment at KK037260.1:11990..14481+

>rna10020 ID=rna10020|Name=rna10020|organism=Nannochloropsis gaditana|type=CDS|length=1512bp|location=Sequence derived from alignment at KK037260.1:11990..14481+ (Nannochloropsis gaditana)
ATGAATctagggacgggaggggaggcagacatggggagggcgcgaacaAA
CACAGCCTTTAGGCCTCCAAGACCCCAGTCAAAGATTAAAAAGGACTCTA
GAACATGCAATGAGCGGAGCCACACCAACAGAGAAACGGCCGATGTCGAA
GACAAATTtgcaggaaaagaggaaaagAATCTCCTCACAGACGCGGTGCG
TCAGGCAGGCAAAGAGATTGACGGCCTTTTCAATGATCTGACTCAACGTA
AACGAGTGGCAGCGGCCAGTGCTACCACCAAGAAAGCTGTGGTGAAGATT
AAAAAGGCAGATTCCCGTCCACCGTCCCATACGGTGGGAAAGAATGAAGG
ACGGAGGTACGACCCTCAGAGAGACGATCCCGACGTCAGACCATGGAAAC
GCGATGCGACTGGCATGCCCATCTACGACCCTGAATCAATGCGTGTTGGA
AAAGGTGGAGGCACGGCCTTGTGTCCTTTCGACTGCAATTGCTGTTTTGG
GTGAATGAATctagggacgggaggggaggcagacatggggagggcgcgaa
caAACACAGCCTTTAGGCCTCCAAGACCCCAGTCAAAGATTAAAAAGGAC
TCTAGAACATGCAATGAGCGGAGCCACACCAACAGAGAAACGGCCGATGT
CGAAGACAAATTtgcaggaaaagaggaaaagAATCTCCTCACAGACGCGG
TGCGTCAGGCAGGCAAAGAGATTGACGGCCTTTTCAATGATCTGACTCAA
CGTAAACGAGTGGCAGCGGCCAGTGCTACCACCAAGAAAGCTGTGGTGAA
GATTAAAAAGGCAGATTCCCGTCCACCGTCCCATACGGTGGGAAAGAATG
AAGGACGGAGGTACGACCCTCAGAGAGACGATCCCGACGTCAGACCATGG
AAACGCGATGCGACTGGCATGCCCATCTACGACCCTGAATCAATGCGTGT
TGGAAAAGGTGGAGGCACGGCCTTGTGTCCTTTCGACTGCAATTGCTGTT
TTGGGTGAATGAATctagggacgggaggggaggcagacatggggagggcg
cgaacaAACACAGCCTTTAGGCCTCCAAGACCCCAGTCAAAGATTAAAAA
GGACTCTAGAACATGCAATGAGCGGAGCCACACCAACAGAGAAACGGCCG
ATGTCGAAGACAAATTtgcaggaaaagaggaaaagAATCTCCTCACAGAC
GCGGTGCGTCAGGCAGGCAAAGAGATTGACGGCCTTTTCAATGATCTGAC
TCAACGTAAACGAGTGGCAGCGGCCAGTGCTACCACCAAGAAAGCTGTGG
TGAAGATTAAAAAGGCAGATTCCCGTCCACCGTCCCATACGGTGGGAAAG
AATGAAGGACGGAGGTACGACCCTCAGAGAGACGATCCCGACGTCAGACC
ATGGAAACGCGATGCGACTGGCATGCCCATCTACGACCCTGAATCAATGC
GTGTTGGAAAAGGTGGAGGCACGGCCTTGTGTCCTTTCGACTGCAATTGC
TGTTTTGGGTGA

Synonyms

Publications