EWM20684.1, cds9989 (CDS) Nannochloropsis gaditana

Overview
NameEWM20684.1
Unique Namecds9989
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037260.1:12418..12594 +
Alignment locationKK037260.1:12847..13063 +
Alignment locationKK037260.1:13278..13387 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20684.1
ProductProtein of unknown function DUF1764, eukaryotic
Orig transcript idgnl|cribi|Naga_100517g1.9943.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:12418..12594 +
KK037260.1supercontigKK037260.1:12847..13063 +
KK037260.1supercontigKK037260.1:13278..13387 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013885DUF1764_euk
Homology
BLAST of EWM20684.1 vs. NCBI_GenBank
Match: gi|585100505|gb|EWM20684.1| (Protein of unknown function DUF1764, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 345.125 bits (884), Expect = 2.738e-120
Identity = 167/167 (100.00%), Postives = 167/167 (100.00%), Query Frame = 0
Query:    1 MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCFG 167
            MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCFG
Sbjct:    1 MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCFG 167          
BLAST of EWM20684.1 vs. NCBI_GenBank
Match: gi|585100506|gb|EWM20685.1| (Protein of unknown function DUF1764, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 264.233 bits (674), Expect = 8.787e-89
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0
Query:    1 MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPWK 133
            MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRP K
Sbjct:    1 MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPCK 133          
BLAST of EWM20684.1 vs. NCBI_GenBank
Match: gi|698795684|ref|XP_009830871.1| (hypothetical protein H257_07134 [Aphanomyces astaci] >gi|574114447|gb|ETV79935.1| hypothetical protein H257_07134 [Aphanomyces astaci])

HSP 1 Score: 65.855 bits (159), Expect = 2.005e-10
Identity = 46/164 (28.05%), Postives = 75/164 (45.73%), Query Frame = 0
Query:    3 LGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCF 166
            +  G ++   +A  +  F   +  +K+ KD+     ++     TA V    AGK++K       + A  ++D LF+ +  +K+         +     + A+ R     +   E        D  D RP + DA G+PIY  ES+R+ +GG TA CPFDC CCF
Sbjct:   19 MAVGAKSTSAKASLDALFATKKTAAKVPKDAGASKLKT-----TAVV----AGKQDK-------QTAKHQLDALFSGIKAKKQQKIDEDNAVRRQEDKELAEKRAYRKHLEALEAEHKQKNNDSSDPRPVRYDADGLPIYSEESLRLNQGGETADCPFDCWCCF 166          
BLAST of EWM20684.1 vs. NCBI_GenBank
Match: gi|873231610|emb|CEM07797.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 63.929 bits (154), Expect = 1.019e-9
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = 0
Query:   70 GKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRR-YDPQRDDPDV----RPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCF 166
            G++ID LF+ L ++ +    S  T++A        ++    +     GRR   P   D D+    RP +    G PIY  E +R+G+GGGT LCPFDC+CCF
Sbjct:   72 GRQIDALFSRLKRKHK----SEPTQQAKTATTSGGNKVRGDSSVARRGRRPKQPSSIDEDLSLANRPRRYTEEGWPIYTEEELRIGQGGGTPLCPFDCDCCF 169          
BLAST of EWM20684.1 vs. NCBI_GenBank
Match: gi|299470800|emb|CBN79846.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 61.6178 bits (148), Expect = 8.381e-9
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 0
Query:  128 DVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCF 166
            +V+P + D  G+PIY  ES+R+G+GGGTA CPFDC+CCF
Sbjct:  144 EVKPVRFDDEGLPIYTWESLRIGQGGGTAACPFDCDCCF 182          
BLAST of EWM20684.1 vs. NCBI_GenBank
Match: gi|953486308|emb|CEG49639.1| (Protein of unknown function DUF1764, eukaryotic [Plasmopara halstedii])

HSP 1 Score: 62.003 bits (149), Expect = 8.846e-9
Identity = 35/101 (34.65%), Postives = 51/101 (50.50%), Query Frame = 0
Query:   72 EIDGLFNDLTQRKRVAAASATTKKAVVKIK----KADSRPPSHTVGKNEGRRYDPQR--DDPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCF 166
            EID LF  L  +KR    +   +K   ++K    K +       + K E +  +      +PD RP + D  G+PIY   ++++GKGG T  CPFDC CCF
Sbjct:   99 EIDDLFAILKTKKRKKNIAEENQKLAKEVKERCEKKERERLQQQIKKLEAQNTNSTACGLNPDPRPVRYDEDGLPIYTEAALQIGKGGNTQDCPFDCWCCF 199          
BLAST of EWM20684.1 vs. NCBI_GenBank
Match: gi|301090157|ref|XP_002895307.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262100734|gb|EEY58786.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 59.6918 bits (143), Expect = 1.309e-8
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0
Query:  126 DPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCF 166
            +PD RP + D  G+PIY   S+++GKGG T  CPFDC CCF
Sbjct:   80 NPDPRPVRYDEDGLPIYSEASLQIGKGGNTKDCPFDCWCCF 120          
BLAST of EWM20684.1 vs. NCBI_GenBank
Match: gi|813227181|ref|XP_012212667.1| (hypothetical protein SPRG_17870, partial [Saprolegnia parasitica CBS 223.65] >gi|641520482|gb|KDO16626.1| hypothetical protein SPRG_17870, partial [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 60.8474 bits (146), Expect = 1.368e-8
Identity = 34/98 (34.69%), Postives = 53/98 (54.08%), Query Frame = 0
Query:   69 AGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCF 166
            A  E+D LF+ L  +K+ A A +  ++  +  ++A+       + K E        D  + +P + DA G+PIY   S+R+ +GG TA CPFDC CCF
Sbjct:   60 AKLELDALFSGLKAKKKKAQADSAAEQKRLDEERAEKLAYRKKLEKIENEYKTKHSDSSNPQPVRYDADGLPIYTAASLRINQGGDTADCPFDCWCCF 157          
BLAST of EWM20684.1 vs. NCBI_GenBank
Match: gi|301088727|ref|XP_002894779.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262108814|gb|EEY66866.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 59.6918 bits (143), Expect = 1.438e-8
Identity = 23/41 (56.10%), Postives = 29/41 (70.73%), Query Frame = 0
Query:  126 DPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCF 166
            +PD RP + D  G+PIY   S+++GKGG T  CPFDC CCF
Sbjct:   79 NPDPRPVRYDEDGLPIYSEASLQIGKGGNTKDCPFDCWCCF 119          
BLAST of EWM20684.1 vs. NCBI_GenBank
Match: gi|697888362|ref|XP_009689424.1| (uncharacterized protein TOT_010001188 [Theileria orientalis strain Shintoku] >gi|403220990|dbj|BAM39123.1| uncharacterized protein TOT_010001188 [Theileria orientalis strain Shintoku])

HSP 1 Score: 59.6918 bits (143), Expect = 1.683e-8
Identity = 38/97 (39.18%), Postives = 47/97 (48.45%), Query Frame = 0
Query:   73 IDGLFNDLTQRKRVAAASATTK---KAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPWKRDATGMPIYDPESMRVGKGGGTALCPFDCNCCF 166
            I+ +F  L        + A+TK   K++VK K    R      GK E   Y     D   R    D   +PIY  E + +GKGGGT LCPFDCNCCF
Sbjct:   32 INDIFKTLKTTSHTNTSKASTKPSTKSIVKEKSKGKR------GKTE--EYCTVNGDSARRRTTVD--NLPIYTMEELNIGKGGGTELCPFDCNCCF 118          
The following BLAST results are available for this feature:
BLAST of EWM20684.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100505|gb|EWM20684.1|2.738e-120100.00Protein of unknown function DUF1764, eukaryotic [N... [more]
gi|585100506|gb|EWM20685.1|8.787e-8999.25Protein of unknown function DUF1764, eukaryotic [N... [more]
gi|698795684|ref|XP_009830871.1|2.005e-1028.05hypothetical protein H257_07134 [Aphanomyces astac... [more]
gi|873231610|emb|CEM07797.1|1.019e-936.27unnamed protein product [Vitrella brassicaformis C... [more]
gi|299470800|emb|CBN79846.1|8.381e-961.54conserved unknown protein [Ectocarpus siliculosus][more]
gi|953486308|emb|CEG49639.1|8.846e-934.65Protein of unknown function DUF1764, eukaryotic [P... [more]
gi|301090157|ref|XP_002895307.1|1.309e-856.10conserved hypothetical protein [Phytophthora infes... [more]
gi|813227181|ref|XP_012212667.1|1.368e-834.69hypothetical protein SPRG_17870, partial [Saproleg... [more]
gi|301088727|ref|XP_002894779.1|1.438e-856.10conserved hypothetical protein [Phytophthora infes... [more]
gi|697888362|ref|XP_009689424.1|1.683e-839.18uncharacterized protein TOT_010001188 [Theileria o... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10020rna10020Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications