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Properties
| Property Name | Value |
|---|
| Product | tbc domain-containing protein |
| Orig transcript id | gnl|cribi|Naga_100112g19.5445.mrna |
| Orig protein id | gnl|cribi|Naga_100112g19.5445 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:935804..938186 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna1002 ID=rna1002|Name=rna1002|organism=Nannochloropsis gaditana|type=mRNA|length=2905bp
AGAACGCCCGCGAGAGGCTTCCCTTCTTTGGTTGCAAAGCTACACTACTC
GTCGTCGACCTCCCTCACTTTAGAAAGCCGCCTTTCCACTCCAGCAATTT
TCATTCCGCACGACATCGCAATGCCTCCCTTGACAAGGAGGAAACAAAGA
GCAAGCGTTTTAAAAATGACGCCTCTTCTTCTTCTACCTGCTTTCATCTT
TTTGTCACCTGCTTCCGTGCATGAAGTCGCCGCCGTCAAGCTGGGCACGG
TGTCTCCGCGCGTCTGGGAGAGCTTGGAGCGGCAAGGGATCGACAGCGAG
GTTATGGACGAGGCCGCCGCGGAGGTTGCGGCCGCTGCTGCAGCTACTGC
TGCTGCAGAAGCCACAAAGGACGCTGCCAAAGAAGGGGAGGAGCTAAAGC
GACTCAAAGTGGAAAGAGCTCGACGGGAGGCATTGGACAGGGCCAAGGAC
ATCGACTGGAAGTCGACAGCTGACGCGGCGAAGAAGGAGCGGGAATTGGA
CGAGAAGTATGGGATGTGGAAGCACGTGATCCTCAATCCCTGGTTCCAGT
GGGTGATGGGGCTCCTGGACGACCTGGCGGCGATCGAGTTGGTCGGGGAG
GCCAGGATGGCGCCGGCCGCGATCCTGGTCCTCCTTTACATGCTCTTCAA
AGCCCGACAGCCCCTCTCGGTCCTCTGTCTGGCCGCTGCATTCTTCTACA
ACATCCACCCCATCCTCATCGCTGGTTCCGCGGTTGGGCTCAAGGCCTGG
TCGAAGCTGCGCCGGCCGAAGGGCTATGTCCCCGCGGAGGAGCGGAAGAA
GCGGCTTCCCGGGGCCGCAGACGAGGCCCAGGGAGTAGAGGGCGATCCAC
GGAGTGCGCAGGCCAAGAGAGGGAAGGCCCACGGGGCGCCGGGCCTGTCG
GAGGACGCGCGAGACATCCGGACCCTGCTGACCCTCCCCCAAGACGTGGA
CCACATCGTGCTCGGATCGGACGTGGGGGGGCTGTACGCGGCGGCCCTGC
TGGCCCGCGTCGGCCACAGAGTGCTGGTGCTGGAGGGCGGGGAGACGGTG
GGGAACTGCACGAGCGAGCTGAAAGGGGTGGAATGCGACTGGGGCCTGCT
GAACGCGGGCATGGTGCACGTCTACGACGAGCTCCTCAAAGCCGGCGCCC
TGGAAGGGGCGCCCGAGGTGAAATGGTCACGGATCGGGACGGAGGCGGAC
GGGCACTCCTTCGACGTGGTCAAGATCGAGGGCCTGGGCGACGTGGTTTA
TCGCGCGGGGAAACAGGCCCTGGTGGACGACCAGGTCACCTCCGCGCCGG
GACCCGAGAACCGGGAGAGGGTGGGCACATTCGTGAGTCGGCTCCAGGCG
GTGGCCCGGGAGCAGTCTGCCTTCTTCATCGGCCGCCTCTTCTCGCAGCA
GACCGCCGGGTGGATCACAACGCTCCTGGGGCAGCAGTACGGGGGCGTGG
GGGCGAGGACCGCGGAGCAGGTCTTGGGGGTGACCCTCCCGGACTATCGA
CAGCTCGACCTTTTGCGGGGCATGTTCCGCACGGAGAACCTGCAACCCTC
GGAGCTGTCCTTCGCGGCCTACGTGTCGGCGACGAACCACGCCTTGGAAG
GCCTGAGCTACCCGCAGGGGGGCTTCCGGAGCCTGGCGCGGGCCCTGGTC
CCCACCATCCAGGCGGCCGGCGGCCGGGTCTTGACGCGCGCGCACGTGAG
AGAGATCCTGCTGGACAGCCAGAGCAAGCCCACGCGGGCGGTGGGAGTGG
TGCTGGAAAATGGAGAGAAGGTGTCCTGTGCCAAATCGGTCATCTGCGCC
TCGGGCGTGGTCCCCCTCTTCACCCAGTACCTTCCCAAGGCCCCTCTCCC
CGCGGGGGGAGACTGCTTGCAGGAGGCAAGGCCCCGCCTGTACACGCTCG
TGCTGCTCAAGGGTTCGGCGGAAGAGTTAGAGCTACCCGCTTCGGACTAC
TATCAGTTGCCGACCGAGGAGGGCGGCGGAGGGGGAGGAGGGGCGCCCCG
GGGCTGGTTTCACATTTATTTTCCGTCGGCGAAAGAGCCATCGGGCGTGG
CGACCATTACAGGACCTGTCGGCAAAGACACGCATGGGAAAGAAGAGGCG
AAGGGCGGGGCACGGGGATACAGCACCTGTGTGATAGAGACGGAGGCCGA
CGACGACATTTTGGAGGTGTGCTACCGGCGAGTGGACGGAAGCACTAGCA
GCAAGCCTGTCTCAGGGCCTGCCGACGCTCGCTCCAAGGGAAAAGCGGCG
CCTGGCTCCAGTACGATGGCTGCGGGCCCGTCTGGCCTCAAATTTTACCA
CATCAAGCCGCCCTCAGACCAGAAGGTGCGCCGGTTGCAACAGGGGCTGG
TGCGCCACCTCCTGCAGCTGTACCCGCAGCTGGAGGGGCACGTGGAGGAG
CAAGGGATCCAGACGGTCGGCCCTTTCCGCGTGGGGCTGTCCCACCGGCC
TCCGCGTTTCATGGCCCCGGGTCTGCGCACCCGGATCGTGCCGGGCGTGG
CGAACGTGCTCTTGGGGGGCGGGGACCTGGTTCTCGGGACATTCGTCGGC
AGCCTGCTTGGCGGTTGGCTTGCCGCGCATTCGGCTCTGAACTACGGAGC
GCTTGACCTGCTCGTGCTGGAGCGGAATCTGAACAACGACCTGAAGAACG
TGCCGCGGCCCCGGTATGAAGGCGGGGGTGGAGAGGAGCCGCATGCAGGA
GGGGGGGGGGATGAGGCCAAGCAGGACTAAGGCTGCTCGAGTGCGATGCG
ACGTTTCGTGGGGTAAAACTGTCCCGCTTTATGACAAATGGTCTCCCGGT
CAAAAGATGGAAGTGGCACACAAAGCAATAAAGACTTGGCGACTTCCTCG
TGCTATGCACAACTCACGGGCCACAGATTAAATCTACAAATTTTGTCTAT
TTTGT back to topprotein sequence of rna1002 >rna1002-protein ID=rna1002-protein|Name=rna1002|organism=Nannochloropsis gaditana|type=polypeptide|length=666bp
MHTSRQVNQSADLQYSTVLWEAAFDANKNDDDTEEADLSDEEMREAHGPS
LEHSIMVARGGKLCIRVRDDSWILPGTVFVSHFDSVSSQGGKGPIEESGL
VGVGDFLVRVNGCDVVGKGARHALALIKDEASADSVSLTFRRLQTSSISR
EGNRIRSEAGIHLTEQHRVLMFRYLLDSKPIDKRRLASLAGDGIPDVDKH
LRPLAWRILLLYLPDEVSLWDAHLKQERAIYYQLVQELTIMTGPAASCPP
SASGHVINESEDQNFRGSWRAGDASPRLDTPLCALSSAPSQEGDARNTAG
SMKATDPNLTFCQGHPGSAPPLPRSGRGSGELDVSLGSSQDRLPTRPRFD
ADRSLFNEIRKDVVRTHPDQNFYQDQTFGTARYDALLRILFIYAKTNSGT
RYIQGMNELAGTLFYVMSRDSDQEWAEHAEADTMFLFAQLMSQLRDVFIE
KMDESDTGIESKFEQLEVLLERHDPTLSKHFRMIGLEAHFYSLRWITTLF
CREFTLPDTIAVWDALFADKDFSDFILYFCLSMLMEQRQEMLRCSFAKCL
QSLQAYSPEAEMKRLLHRMRSLRAQDSASGFRVDRRVGEAATPSTSRVRN
YFSRVSSRMRDDVPIALGSFSTESKSHLKRAGAQLKASFGSMRKLIGDSM
SVLPSPGATGGAPSTT back to topmRNA from alignment at CM002456.1:935804..938186+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna1002 ID=rna1002|Name=rna1002|organism=Nannochloropsis gaditana|type=mRNA|length=2383bp|location=Sequence derived from alignment at CM002456.1:935804..938186+ (Nannochloropsis gaditana)
GACAGGTCGCGCCGGGACGCATGCATACTTCAAGACAAGTAAATCAATCG
GCTGACCTCCAGTACTCCACAGTGTTGTGGGAGGCGGCCTTTGACGCCAA
TAAAAATGACGacgacacggaggaggccgaCCTCAGCGACGAAGAGATGA
GGGAAGCGCATGGGCCAAGCCTGGAGCACTCAATCATGGTGGCTCGCGGG
GGAAAACTGTGCATACGGGTGCGGGACGACTCATGGATACTGCCGGGGAC
AGTATTTGTCTCTCACTTCGACTCCGTGAGCTCGCAAGGCGGCAAAGGTC
CCATCGAGGAGAGTGGTTTGGTGGGAGTGGGCGATTTTCTGGTCCGGGTC
AATGGATGCGACGTCGTAGGCAAGGGGGCTCGGCACGCTTTGGCTCTGAT
CAAAGATGAGGCCAGCGCCGATTCTGTCAGCCTGACGTTTCGACGGCTGC
AGACGTCCAGCATATCCAGAGAGGGAAACCGAATAAGAAGCGAGGCTGGG
ATCCATTTGACGGAGCAACGTAAGTCCACAAACAGGATTAAATTCTAGAA
ATTGCATAGTAACATCAATATTAACGCATGTCATGAATTCGTTACCGCAG
ATCAAAGCAAAGAGGGCTTTTTTCCTACCTTGTACTCACATGTTtctatt
tccttccttcggcACTAGACCGTGTTCTCATGTTCCGTTATCTGCTGGAT
AGCAAACCTATCGATAAAAGACGCCTGGCCTCTTTGGCCGGCGATGGCAT
CCCAGACGTCGATAAGCATTTGCGGCCATTGGCGTGGCGAATCTTGCTCT
TATATCTGCCTGATGAGGTATCGCTATGGGATGCTCATTTGAAGCAAGAA
CGTGCAATCTACTACCAATTGGTGCAAGAATTGACAATAATGACCGGGCC
CGCAGCGTCATGCCCGCCTTCTGCCTCGGGCCATGTGATTAATGAGAGCG
AGGACCAGAACTTCCGAGGCAgttggagggcgggcgacgcCTCACCGCGG
TTAGATACACCGCTATGTGCCTtgtcctcggcgccctcccaagaaggaga
cgccCGGAACACCGCAGGTTCAATGAAAGCCACAGACCCGAATTTGACTT
TTTGCCAGGGGCATCCGGGCTCagcgcctccgcttcctcgcAGCGGCCGT
GGCTCTGGCGAGCTGGATGTCTCCCTGGGCTCATCCCAAGACCGGCTGCC
GACCCGGCCTCGCTTCGATGCCGACCGGTCCCTCTTCAATGAAATTCGCA
AAGACGTGGTTCGCACGCACCCAGACCAAAACTTCTACCAGGACCAGACC
TTTGGGACTGCGCGGTACGATGCTTTGCtacgcatcctcttcatttACGC
CAAGACGAACTCGGGCACCCGGTACATCCAAGGGATGAACGAGCTGGCAG
GCACGCTCTTCTACGTGATGAGCAGAGACTCGGACCAGGAATGGGCAGAG
CACGCGGAGGCTGACACCATGTTCCTCTTCGCGCAACTTATGTCGCAGCT
CAGGGATGTGTTCATCGAGAAGATGGATGAAAGTGACACGGGTATCGAGA
GCAAGTTCGAGCAGCTGGAGGTCCTCCTGGAGCGGCATGATCCCACCCTA
TCAAAGCATTTTCGTATGATCGGGCTTGAGGCCCATTTCTACTCCCTTCG
ATGGATCACGACTCTGTTTTGCAGGGAGTTCACGCTGCCAGACACAATCG
CGGTGTGGGACGCCTTGTTCGCAGACAAGGACTTCTCCGATTTCATATTG
TACTTCTGTCTCAGCATGCTGATGGAGCAAAGACAAGAAATGCTACGATG
TAGCTTCGCGAAATGCTTGCAGTCGCTGCAAGCCTACTCGCCCGAGGCAG
AAATGAAGCGACTTTTACACCGGATGAGGAGCCTGCGGGCGCAGGATTCC
GCCTCCGGATTCCGTGTCGATCGAAgagtgggagaggcggcCACACCATC
CACAAGTCGCGTCCGTAATTACTTTTCTCGTGTATCGTCGCGAATGAGAG
ATGACGTGCCAATAGCCCTCGGATCTTTTTCTACAGAGAGCAAGTCCCAC
TTAAAGCGGGCAGGGGCACAGCTGAAAGCCTCTTTCGGCAGTATGCGCAA
GCTAATAGGTGACAGTATGtctgtccttccttctccaggaGCCACAGGCG
GAGCGCCATCCACTACATAGCATTCAGATTTATCGATGATCAATCACTGA
TTTCGTGAAtcggaaaaaaaatgtggtGAAGCTAAATCACCTTATGCGGC
TTTTCAGGATGCAAGACAAAGTCGACGACGATCTCACTCCAGACTGTAAA
ATATGGCCGTCAGCAAGAATACAATTGCACAGTATCGACAAACGCATGCA
TGCAAATATATGATTATAGAAAATCATTGTTCT back to topCoding sequence (CDS) from alignment at CM002456.1:935804..938186+ >rna1002 ID=rna1002|Name=rna1002|organism=Nannochloropsis gaditana|type=CDS|length=4002bp|location=Sequence derived from alignment at CM002456.1:935804..938186+ (Nannochloropsis gaditana)
ATGCATACTTCAAGACAAGTAAATCAATCGGCTGACCTCCAGTACTCCAC
AGTGTTGTGGGAGGCGGCCTTTGACGCCAATAAAAATGACGacgacacgg
aggaggccgaCCTCAGCGACGAAGAGATGAGGGAAGCGCATGGGCCAAGC
CTGGAGCACTCAATCATGGTGGCTCGCGGGGGAAAACTGTGCATACGGGT
GCGGGACGACTCATGGATACTGCCGGGGACAGTATTTGTCTCTCACTTCG
ACTCCGTGAGCTCGCAAGGCGGCAAAGGTCCCATCGAGGAGAGTGGTTTG
GTGGGAGTGGGCGATTTTCTGGTCCGGGTCAATGGATGCGACGTCGTAGG
CAAGGGGGCTCGGCACGCTTTGGCTCTGATCAAAGATGAGGCCAGCGCCG
ATTCTGTCAGCCTGACGTTTCGACGGCTGCAGACGTCCAGCATATCCAGA
GAGGGAAACCGAATAAGAAGCGAGGCTGGGATCCATTTGACGGAGCAACA
CCGTGTTCTCATGTTCCGTTATCTGCTGGATAGCAAACCTATCGATAAAA
GACGCCTGGCCTCTTTGGCCGGCGATGGCATCCCAGACGTCGATAAGCAT
TTGCGGCCATTGGCGTGGCGAATCTTGCTCTTATATCTGCCTGATGAGGT
ATCGCTATGGGATGCTCATTTGAAGCAAGAACGTGCAATCTACTACCAAT
TGGTGCAAGAATTGACAATAATGACCGGGCCCGCAGCGTCATGCCCGCCT
TCTGCCTCGGGCCATGTGATTAATGAGAGCGAGGACCAGAACTTCCGAGG
CAgttggagggcgggcgacgcCTCACCGCGGTTAGATACACCGCTATGTG
CCTtgtcctcggcgccctcccaagaaggagacgccCGGAACACCGCAGGT
TCAATGAAAGCCACAGACCCGAATTTGACTTTTTGCCAGGGGCATCCGGG
CTCagcgcctccgcttcctcgcAGCGGCCGTGGCTCTGGCGAGCTGGATG
TCTCCCTGGGCTCATCCCAAGACCGGCTGCCGACCCGGCCTCGCTTCGAT
GCCGACCGGTCCCTCTTCAATGAAATTCGCAAAGACGTGGTTCGCACGCA
CCCAGACCAAAACTTCTACCAGGACCAGACCTTTGGGACTGCGCGGTACG
ATGCTTTGCtacgcatcctcttcatttACGCCAAGACGAACTCGGGCACC
CGGTACATCCAAGGGATGAACGAGCTGGCAGGCACGCTCTTCTACGTGAT
GAGCAGAGACTCGGACCAGGAATGGGCAGAGCACGCGGAGGCTGACACCA
TGTTCCTCTTCGCGCAACTTATGTCGCAGCTCAGGGATGTGTTCATCGAG
AAGATGGATGAAAGTGACACGGGTATCGAGAGCAAGTTCGAGCAGCTGGA
GGTCCTCCTGGAGCGGCATGATCCCACCCTATCAAAGCATTTTCGTATGA
TCGGGCTTGAGGCCCATTTCTACTCCCTTCGATGGATCACGACTCTGTTT
TGCAGGGAGTTCACGCTGCCAGACACAATCGCGGTGTGGGACGCCTTGTT
CGCAGACAAGGACTTCTCCGATTTCATATTGTACTTCTGTCTCAGCATGC
TGATGGAGCAAAGACAAGAAATGCTACGATGTAGCTTCGCGAAATGCTTG
CAGTCGCTGCAAGCCTACTCGCCCGAGGCAGAAATGAAGCGACTTTTACA
CCGGATGAGGAGCCTGCGGGCGCAGGATTCCGCCTCCGGATTCCGTGTCG
ATCGAAgagtgggagaggcggcCACACCATCCACAAGTCGCGTCCGTAAT
TACTTTTCTCGTGTATCGTCGCGAATGAGAGATGACGTGCCAATAGCCCT
CGGATCTTTTTCTACAGAGAGCAAGTCCCACTTAAAGCGGGCAGGGGCAC
AGCTGAAAGCCTCTTTCGGCAGTATGCGCAAGCTAATAGGTGACAGTATG
tctgtccttccttctccaggaGCCACAGGCGGAGCGCCATCCACTACATA
GATGCATACTTCAAGACAAGTAAATCAATCGGCTGACCTCCAGTACTCCA
CAGTGTTGTGGGAGGCGGCCTTTGACGCCAATAAAAATGACGacgacacg
gaggaggccgaCCTCAGCGACGAAGAGATGAGGGAAGCGCATGGGCCAAG
CCTGGAGCACTCAATCATGGTGGCTCGCGGGGGAAAACTGTGCATACGGG
TGCGGGACGACTCATGGATACTGCCGGGGACAGTATTTGTCTCTCACTTC
GACTCCGTGAGCTCGCAAGGCGGCAAAGGTCCCATCGAGGAGAGTGGTTT
GGTGGGAGTGGGCGATTTTCTGGTCCGGGTCAATGGATGCGACGTCGTAG
GCAAGGGGGCTCGGCACGCTTTGGCTCTGATCAAAGATGAGGCCAGCGCC
GATTCTGTCAGCCTGACGTTTCGACGGCTGCAGACGTCCAGCATATCCAG
AGAGGGAAACCGAATAAGAAGCGAGGCTGGGATCCATTTGACGGAGCAAC
ACCGTGTTCTCATGTTCCGTTATCTGCTGGATAGCAAACCTATCGATAAA
AGACGCCTGGCCTCTTTGGCCGGCGATGGCATCCCAGACGTCGATAAGCA
TTTGCGGCCATTGGCGTGGCGAATCTTGCTCTTATATCTGCCTGATGAGG
TATCGCTATGGGATGCTCATTTGAAGCAAGAACGTGCAATCTACTACCAA
TTGGTGCAAGAATTGACAATAATGACCGGGCCCGCAGCGTCATGCCCGCC
TTCTGCCTCGGGCCATGTGATTAATGAGAGCGAGGACCAGAACTTCCGAG
GCAgttggagggcgggcgacgcCTCACCGCGGTTAGATACACCGCTATGT
GCCTtgtcctcggcgccctcccaagaaggagacgccCGGAACACCGCAGG
TTCAATGAAAGCCACAGACCCGAATTTGACTTTTTGCCAGGGGCATCCGG
GCTCagcgcctccgcttcctcgcAGCGGCCGTGGCTCTGGCGAGCTGGAT
GTCTCCCTGGGCTCATCCCAAGACCGGCTGCCGACCCGGCCTCGCTTCGA
TGCCGACCGGTCCCTCTTCAATGAAATTCGCAAAGACGTGGTTCGCACGC
ACCCAGACCAAAACTTCTACCAGGACCAGACCTTTGGGACTGCGCGGTAC
GATGCTTTGCtacgcatcctcttcatttACGCCAAGACGAACTCGGGCAC
CCGGTACATCCAAGGGATGAACGAGCTGGCAGGCACGCTCTTCTACGTGA
TGAGCAGAGACTCGGACCAGGAATGGGCAGAGCACGCGGAGGCTGACACC
ATGTTCCTCTTCGCGCAACTTATGTCGCAGCTCAGGGATGTGTTCATCGA
GAAGATGGATGAAAGTGACACGGGTATCGAGAGCAAGTTCGAGCAGCTGG
AGGTCCTCCTGGAGCGGCATGATCCCACCCTATCAAAGCATTTTCGTATG
ATCGGGCTTGAGGCCCATTTCTACTCCCTTCGATGGATCACGACTCTGTT
TTGCAGGGAGTTCACGCTGCCAGACACAATCGCGGTGTGGGACGCCTTGT
TCGCAGACAAGGACTTCTCCGATTTCATATTGTACTTCTGTCTCAGCATG
CTGATGGAGCAAAGACAAGAAATGCTACGATGTAGCTTCGCGAAATGCTT
GCAGTCGCTGCAAGCCTACTCGCCCGAGGCAGAAATGAAGCGACTTTTAC
ACCGGATGAGGAGCCTGCGGGCGCAGGATTCCGCCTCCGGATTCCGTGTC
GATCGAAgagtgggagaggcggcCACACCATCCACAAGTCGCGTCCGTAA
TTACTTTTCTCGTGTATCGTCGCGAATGAGAGATGACGTGCCAATAGCCC
TCGGATCTTTTTCTACAGAGAGCAAGTCCCACTTAAAGCGGGCAGGGGCA
CAGCTGAAAGCCTCTTTCGGCAGTATGCGCAAGCTAATAGGTGACAGTAT
GtctgtccttccttctccaggaGCCACAGGCGGAGCGCCATCCACTACAT
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