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Properties
| Property Name | Value |
|---|
| TranscriptId | 626491 |
| Track | FilteredModels2 |
| ProteinId | 626405 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_49 | supercontig | scaffold_49:106190..109439 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9989 ID=mRNA_9989|Name=jgi.p|Nanoce1779_2|626405|organism=Nannochloropsis oceanica|type=mRNA|length=2470bp
ACAGGCAGCAGGCAAGGCAGAGCGAGTGGTGTGTGCGGTTTGACCAGAGT
CTCCCCGCCCATCCATCAAAAGGAGTACCAGCAGCACTTGCCCTCCCTCT
TCCAACAACTAACACAGCCATTGCCCTGTCGACCAGGCGAGCAGCGCCAC
ATCACCACCGACAATCCCACAGCAAACTGCCGCGGTCCCACCCTCCCGCG
CACTCCTCCGACCCCGCCTCCCTCTCTACCCATCAAAAAATCCAGCACAA
ATCAACCACCACCTTTTGAGTTCAAACAATGGCCACTACAACTACCGTCA
GCACGGCCTCTTTCCTCTTTCTGCTCTTACTGGGCAGCAGCAGCACCAGC
ATCACAGCTTTCTTCCTTCCCCCCTCCTCCTCCCAATACTCCCCCTCCTC
CTACCTCCTTCGACGCTCCCGAACCACCTCCACTATTCTCCAGGCCTTCC
GCAACGACAGCAGTAGTTTCGGTCCTTCCTCCCTCTCTCCCTCCTTCTCT
CCCACAGGCAAGGGAGAGATCACGCTGGTGGGCGCAGGCCCTGGTGATCC
CGACCTCCTCACCCTCGCGGCTATCCGGGCCCTGTCAACAGCTGATATCG
TCGTGGCGGACCGACTTATACCTCCCGAGATGCTGGCCTTGGTAACGGGT
ACGTTAAAAATAGCGGGCAAGCGCCCAGGCTGCGCAGAGGAGGCGCAGCA
AGAGATTTATCGATGGGTGGAGGAGGGTGTAAAAGAGGAGAAGCACGTGG
TACGACTCAAAATTGGCGACCCGTTTTTGTTTGGAAGAGGAGGGGAGGAG
GTGCTCAAGTATCGAGATGCTTTGGGGGTGGAGCCACGATTGATTCCGGG
GGTAAGCTCGGCATTGGCGGCGCCCTTACTCGGATCCATTCCCGTCACTC
ACCGAGGAGTGGCGAACCAGGTGTACATCTGCACGGGGTTCGGCAAGGAG
GGAGACCGGCCTTACCTCGCTCCGTACAACCCGAACCAAACTGCGGTGTT
CTTGATGGCTGTGGGGAGGCTGGGCGAGCTGTCGGAGCAGCTGGTGCAGA
CAGCTGGGTACCCTCCTTTCACACCTGTGGCGATCGTGGAGCAGGCGTCG
ACGCCGAGGCAAAGGACGGTGGTGGGGAGGGTGGGCACGATAGCAATGTA
TGCGGAGAAAGTTGGAGTGAAGGCCCCGGCGGTGATCGTGGTAGGGGAGG
TGGTAAGGGTGTTGTTGGAGGAGGAGGGGGGGGAGGAGGAGATTAAAAAG
CAAGTGTTTTGTAAGAGAAAGAACAAAAAATGAAACCTCCCCCTTATCTC
GAGCAAAATCAAGTACCCCTTTTGTTGCCATTCCCTCATTTTAATGACCC
TCAAGCGCATCTGATTGCTCCTAACTTATCATCCGAGGTATCTGTGGTGA
GTTTGTGGCCTAGTAGCACATATCAAGGGATGTAGAAGCACGGCAAACCT
CTACTTTGGTCCGACCTCCTTTGCCGTGGATCAAAACGACTCACACGCTC
ACCACACCAGACACACACATCAAACACTCAGTCTCGTTCATAGGCCAGGA
GCACGTATGGCAAGGCCCGCTGCTATCTCCACCGCAGCAGCTGGATCCAC
CTCCACCTCTACCTCCTCTTCCGCCTCCTCCTCGACAGGCAACAATCCAT
CGAGCAGCAATAGCACTGCCACTCCCACAATTCACCAAGTCTTCGACCGC
CGCCTGAATTTCAGTAACATATCTACCGATGCCTCCCTTTACTCCATGCT
TCGGGCGTGGGTGCAAGACGACCCGCTGCGGCAACCGCCATGGTATTTTC
ACGTCAAGCAGGAAGGGAGGGAGGGAGGAAGGGCCCTCCATTCGTCGCCC
CCTTCATCTCTATACTTTTCGTCTTCGATGGTAGAAGGAGGACAAGAAAT
AGGGGAAATAGGAGGGTTCTTCCTTCCACCCCCCTTGCCAGAGACGGCCA
TGACGCTGCTGAAAGGGTCTGTCGCTCCTGCTGCTCCTCTTTCTCCCTCT
TCTTCTCCTGCACCTCTCGCTGCTGGCATTGCTGCCAAAGGTACCACCAT
TTCTACAAGCAGCAGGACGATGAACAGAGACCGTAAGTCGGCACCAGCAC
CAGCAGCAGCGGCACCACCACCGCTACCAGCACCAGCACCAACATCAGCA
GGCTTGGCTATTAATGGGTTGCAGCACGTTCCAACGGAAATCCTTCTGGA
TCTTCACGTGGGCTTCTTCCGGCAGGTCAGAAAAGGTTTGGTCAAAGTGA
GAGAGAGGAGGGTGGGGAGGTTTCGGCATCGGTTGGCGTTGTTGGGGTTG
GTGGGAGGGAAAAGAAAGAGGACGAGAAGGAGGGAGGGAACGATGGTGGA
TGAGCGGATACAGGAGTAGGGGGAAAAGAGAGAAAGTGAGGGGATAGGAG
GGAGGGAGGAAGGAGGTGATGGGGAAAGGGGCGAGTGATACCCCGAGGGG
GGGAACCTCGGGAATGAGAG back to topprotein sequence of jgi.p|Nanoce1779_2|626405 >mRNA_9989-protein ID=mRNA_9989-protein|Name=jgi.p|Nanoce1779_2|626405|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MATTTTVSTASFLFLLLLGSSSTSITAFFLPPSSSQYSPSSYLLRRSRTT
STILQAFRNDSSSFGPSSLSPSFSPTGKGEITLVGAGPGDPDLLTLAAIR
ALSTADIVVADRLIPPEMLALVTGTLKIAGKRPGCAEEAQQEIYRWVEEG
VKEEKHVVRLKIGDPFLFGRGGEEVLKYRDALGVEPRLIPGVSSALAAPL
LGSIPVTHRGVANQVYICTGFGKEGDRPYLAPYNPNQTAVFLMAVGRLGE
LSEQLVQTAGYPPFTPVAIVEQASTPRQRTVVGRVGTIAMYAEKVGVKAP
AVIVVGEVVRVLLEEEGGEEEIKKQVFCKRKNKK* back to topmRNA from alignment at scaffold_49:106190..109439- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9989 ID=mRNA_9989|Name=jgi.p|Nanoce1779_2|626405|organism=Nannochloropsis oceanica|type=mRNA|length=3250bp|location=Sequence derived from alignment at scaffold_49:106190..109439- (Nannochloropsis oceanica)
ACAGGCAGCAGGCAAGGCAGAGCGAGTGGTGTGTGCGGTTTGACCAGAGT
CTCCCCGCCCATCCATCAAAAGGAGTACCAGCAGCACTTGCCCTCCCTCT
TCCAACAACTAACACAGCCATTGCCCTGTCGACCAGGCGAGCAGCGCCAC
ATCACCACCGACAATCCCACAGGTAAGCACTCATTCTTAAGCGGTAGCAA
CTCCGTGCTCTTCACATCCCTCCCCTCTCCATTCATTTGCGCACATCCGC
ATCTAAAGCAAACTGCCGCGGTCCCACCCTCCCGCGCACTCCTCCGACCC
CGCCTCCCTCTCTACCCATCAAAAAATCCAGCACAAATCAACCACCACCT
TTTGAGTTCAGTAAGAACGATGCATGAGCGCCATCACCACACGTATTCCC
CGCTCAACTTCCCTTCTCCTCGCGCGCTCTCTCTCACTGTTCCTCTTAAC
ATAGCTGTTGCTCTCGCTTCGCCTCATCTCCTCGACACCCTCTCCCCGTC
TACCACACCCGACACACACACACAGAACAATGGCCACTACAACTACCGTC
AGCACGGCCTCTTTCCTCTTTCTGCTCTTACTGGGCAGCAGCAGCACCAG
CATCACAGCTTTCTTCCTTCCCCCCTCCTCCTCCCAATACTCCCCCTCCT
CCTACCTCCTTCGACGCTCCCGAACCACCTCCACTATTCTCCAGGCCTTC
CGCAACGACAGCAGTAGTTTCGGTCCTTCCTCCCTCTCTCCCTCCTTCTC
TCCCACAGGCAAGGGAGAGATCACGCTGGTGGGCGCAGGCCCTGGTGATC
CCGACCTCCTCACCCTCGCGGCTATCCGGGCCCTGTCAACAGCTGATATC
GTCGTGGCGGACCGACTTATACCTCCCGAGATGCTGGCCTTGGTAACGGG
TACGTTAAAAATAGCGGGCAAGCGCCCAGGCTGCGCAGAGGAGGCGCAGC
AAGAGATTTATCGATGGGTGGAGGAGGGTGTAAAAGAGGAGAAGCACGTG
GTACGACTCAAAATTGGCGACCCGTTTTTGTTTGGAAGAGGAGGGGAGGA
GGTGCTCAAGTATCGAGATGCTTTGGGGGTGGAGCCACGATTGATTCCGG
GGGTAAGCTCGGCATTGGCGGCGCCCTTACTCGGATCCATTCCCGTCACT
CACCGAGGAGTGGCGAACCAGGTGTACATCTGCACGGGGTTCGGCAAGGA
GGGAGACCGGCCTTACCTCGCTCCGTACAACCCGAACCAAACTGCGGTGT
TCTTGATGGCTGTGGGGAGGCTGGGCGAGCTGTCGGAGCAGCTGGTGCAG
ACAGCTGGGTACCCTCCTTTCACACCTGTGGCGATCGTGGAGCAGGCGTC
GACGCCGAGGCAAAGGACGGTGGTGGGGAGGGTGGGCACGATAGCAATGT
ATGCGGAGAAAGTTGGAGTGAAGGCCCCGGCGGTGATCGTGGTAGGGGAG
GTGGTAAGGGTGTTGTTGGAGGAGGAGGGGGGGGAGGAGGAGGTGGAGAG
AGAGGGGGGGAGGATTGTGAAGAGGAGAGGGGAAGGGGAGAGGGGAAGGG
GAGAGGCGATGGAGGCATACATGAGGGGTGAGATGACAGAGGCGGAGGCA
GGGCTATTTGAAGGAGCGAGGGAGGGGGGGAGGGGGGGAGGGATCCCAGC
GTTCTTGAAGAAGAGGAAGGAGCTGAGGCATGGTGTGAGGAACGAGGAGG
GCGAGTCGATGACTGCGCGACGGGGAGGGAGTGATGGAGCGGTAAGGAGT
GGATTGCGAGCAGCAGTAGTCACTGCGGTGCGGCGGGTGCTGTCGTCTAC
ATCATTTTCGTCCATGGAAAAGTGGTGATGCTGTTTGTGATGATAAGTTT
TGAAAATGGAAAAAAAGTGTGAGTACATAAGCGGTAGGAGAGACTAGCTC
TCACGGCGACGACACTTTAGATAAGAATGCGATCCCAACGACAGAACTGC
ATTGTAATTTGTGTATAAGTTTAAAGTAGGGCAGCCTCCAGGCCAGGGAT
TCCTTACTCACCTGCCCCTAGATTAAAAAGCAAGTGTTTTGTAAGAGAAA
GAACAAAAAATGAAACCTCCCCCTTATCTCGAGCAAAATCAAGTACCCCT
TTTGTTGCCATTCCCTCATTTTAATGACCCTCAAGCGCATCTGATTGCTC
CTAACTTATCATCCGAGGTATCTGTGGTGAGTTTGTGGCCTAGTAGCACA
TATCAAGGGATGTAGAAGCACGGCAAACCTCTACTTTGGTCCGACCTCCT
TTGCCGTGGATCAAAACGACTCACACGCTCACCACACCAGACACACACAT
CAAACACTCAGTCTCGTTCATAGGCCAGGAGCACGTATGGCAAGGCCCGC
TGCTATCTCCACCGCAGCAGCTGGATCCACCTCCACCTCTACCTCCTCTT
CCGCCTCCTCCTCGACAGGCAACAATCCATCGAGCAGCAATAGCACTGCC
ACTCCCACAATTCACCAAGTCTTCGACCGCCGCCTGAATTTCAGTAACAT
ATCTACCGATGCCTCCCTTTACTCCATGCTTCGGGCGTGGGTGCAAGACG
ACCCGCTGCGGCAACCGCCATGGTATTTTCACGTCAAGCAGGAAGGGAGG
GAGGGAGGAAGGGCCCTCCATTCGTCGCCCCCTTCATCTCTATACTTTTC
GTCTTCGATGGTAGAAGGAGGACAAGAAATAGGGGAAATAGGAGGGTTCT
TCCTTCCACCCCCCTTGCCAGAGACGGCCATGACGCTGCTGAAAGGGTCT
GTCGCTCCTGCTGCTCCTCTTTCTCCCTCTTCTTCTCCTGCACCTCTCGC
TGCTGGCATTGCTGCCAAAGGTACCACCATTTCTACAAGCAGCAGGACGA
TGAACAGAGACCGTAAGTCGGCACCAGCACCAGCAGCAGCGGCACCACCA
CCGCTACCAGCACCAGCACCAACATCAGCAGGCTTGGCTATTAATGGGTT
GCAGCACGTTCCAACGGAAATCCTTCTGGATCTTCACGTGGGCTTCTTCC
GGCAGGTCAGAAAAGGTTTGGTCAAAGTGAGAGAGAGGAGGGTGGGGAGG
TTTCGGCATCGGTTGGCGTTGTTGGGGTTGGTGGGAGGGAAAAGAAAGAG
GACGAGAAGGAGGGAGGGAACGATGGTGGATGAGCGGATACAGGAGTAGG
GGGAAAAGAGAGAAAGTGAGGGGATAGGAGGGAGGGAGGAAGGAGGTGAT
GGGGAAAGGGGCGAGTGATACCCCGAGGGGGGGAACCTCGGGAATGAGAG
back to topCoding sequence (CDS) from alignment at scaffold_49:106190..109439- >mRNA_9989 ID=mRNA_9989|Name=jgi.p|Nanoce1779_2|626405|organism=Nannochloropsis oceanica|type=CDS|length=2010bp|location=Sequence derived from alignment at scaffold_49:106190..109439- (Nannochloropsis oceanica)
ATTAAAAAGCAAGTGTTTTGTAAGAGAAAGAACAAAAAATGAATGGCCAC
TACAACTACCGTCAGCACGGCCTCTTTCCTCTTTCTGCTCTTACTGGGCA
GCAGCAGCACCAGCATCACAGCTTTCTTCCTTCCCCCCTCCTCCTCCCAA
TACTCCCCCTCCTCCTACCTCCTTCGACGCTCCCGAACCACCTCCACTAT
TCTCCAGGCCTTCCGCAACGACAGCAGTAGTTTCGGTCCTTCCTCCCTCT
CTCCCTCCTTCTCTCCCACAGGCAAGGGAGAGATCACGCTGGTGGGCGCA
GGCCCTGGTGATCCCGACCTCCTCACCCTCGCGGCTATCCGGGCCCTGTC
AACAGCTGATATCGTCGTGGCGGACCGACTTATACCTCCCGAGATGCTGG
CCTTGGTAACGGGTACGTTAAAAATAGCGGGCAAGCGCCCAGGCTGCGCA
GAGGAGGCGCAGCAAGAGATTTATCGATGGGTGGAGGAGGGTGTAAAAGA
GGAGAAGCACGTGGTACGACTCAAAATTGGCGACCCGTTTTTGTTTGGAA
GAGGAGGGGAGGAGGTGCTCAAGTATCGAGATGCTTTGGGGGTGGAGCCA
CGATTGATTCCGGGGGTAAGCTCGGCATTGGCGGCGCCCTTACTCGGATC
CATTCCCGTCACTCACCGAGGAGTGGCGAACCAGGTGTACATCTGCACGG
GGTTCGGCAAGGAGGGAGACCGGCCTTACCTCGCTCCGTACAACCCGAAC
CAAACTGCGGTGTTCTTGATGGCTGTGGGGAGGCTGGGCGAGCTGTCGGA
GCAGCTGGTGCAGACAGCTGGGTACCCTCCTTTCACACCTGTGGCGATCG
TGGAGCAGGCGTCGACGCCGAGGCAAAGGACGGTGGTGGGGAGGGTGGGC
ACGATAGCAATGTATGCGGAGAAAGTTGGAGTGAAGGCCCCGGCGGTGAT
CGTGGTAGGGGAGGTGGTAAGGGTGTTGTTGGAGGAGGAGGGGGGGGAGG
AGGAGATTAAAAAGCAAGTGTTTTGTAAGAGAAAGAACAAAAAATGAATG
GCCACTACAACTACCGTCAGCACGGCCTCTTTCCTCTTTCTGCTCTTACT
GGGCAGCAGCAGCACCAGCATCACAGCTTTCTTCCTTCCCCCCTCCTCCT
CCCAATACTCCCCCTCCTCCTACCTCCTTCGACGCTCCCGAACCACCTCC
ACTATTCTCCAGGCCTTCCGCAACGACAGCAGTAGTTTCGGTCCTTCCTC
CCTCTCTCCCTCCTTCTCTCCCACAGGCAAGGGAGAGATCACGCTGGTGG
GCGCAGGCCCTGGTGATCCCGACCTCCTCACCCTCGCGGCTATCCGGGCC
CTGTCAACAGCTGATATCGTCGTGGCGGACCGACTTATACCTCCCGAGAT
GCTGGCCTTGGTAACGGGTACGTTAAAAATAGCGGGCAAGCGCCCAGGCT
GCGCAGAGGAGGCGCAGCAAGAGATTTATCGATGGGTGGAGGAGGGTGTA
AAAGAGGAGAAGCACGTGGTACGACTCAAAATTGGCGACCCGTTTTTGTT
TGGAAGAGGAGGGGAGGAGGTGCTCAAGTATCGAGATGCTTTGGGGGTGG
AGCCACGATTGATTCCGGGGGTAAGCTCGGCATTGGCGGCGCCCTTACTC
GGATCCATTCCCGTCACTCACCGAGGAGTGGCGAACCAGGTGTACATCTG
CACGGGGTTCGGCAAGGAGGGAGACCGGCCTTACCTCGCTCCGTACAACC
CGAACCAAACTGCGGTGTTCTTGATGGCTGTGGGGAGGCTGGGCGAGCTG
TCGGAGCAGCTGGTGCAGACAGCTGGGTACCCTCCTTTCACACCTGTGGC
GATCGTGGAGCAGGCGTCGACGCCGAGGCAAAGGACGGTGGTGGGGAGGG
TGGGCACGATAGCAATGTATGCGGAGAAAGTTGGAGTGAAGGCCCCGGCG
GTGATCGTGGTAGGGGAGGTGGTAAGGGTGTTGTTGGAGGAGGAGGGGGG
GGAGGAGGAG back to top
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