jgi.p|Nanoce1779_2|606910, mRNA_9721 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606910
Unique NamemRNA_9721
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length722
Alignment locationscaffold_37:7964..9330 -

Link to JBrowse

Properties
Property NameValue
TranscriptId606996
TrackFilteredModels2
ProteinId606910
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:7964..9330 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606910gene_9721Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606910mRNA_9721-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9721CDS_9721Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9721 ID=mRNA_9721|Name=jgi.p|Nanoce1779_2|606910|organism=Nannochloropsis oceanica|type=mRNA|length=722bp
ACAGGCATTTATCTATCGTTGAAGACTTCTTCCTCCGGTAGATCTTAGCC
AAGATGGGTCGCATGCACAGCTCCGGCAAGGGCATGGCCTCCTCCGCCAT
CCCCTACAAGCGCACCCCCCCTTCGTGGGTCAAGGCCACGGCCAAGGATG
TGGAGGAGCACGTGTGCAAGCTGGCGAAGAAGGGCCTGACCCCTTCCAAC
ATCGGTGTGATTCTTAGGGACTCCTACGGCATTGCGCAGGTCAAGTCCGT
GACCGGCTCTAAGATTTTGCGTCTGCTCAAGAAGAACCTCCTGGCTCCGG
AAATTCCCGAGGATCTGTACATGTTGATCAAGAAAGCCGTGGCTGTGCGT
AAGCATTTGGAGCGCAACCGCAAGGATAAGGACAGCAAATTCCGCCTCAT
TCTCATCGAGAGCCGCATTCACCGATTGGCCCGCTACTACCGAACGACCC
GCAAGCTGACCCCCAACTGGAAGTACGAGTCTTCGACGGCCGCGTCTCTG
GTGGCGTAAACATCGCCTCATGCTGAAGGAGGGAAGGAGGGAAGGAGAGA
GGATGGGTGAGAAGGGTCTTTATCCGATGGTGGGCTTAGGCTGAGCTTGC
GGATAGACAGGAGCTGAACTTCTGTTGTTCTGGGGGTAGGCAAATGAAGG
AAGAAAGGAGAAGGGCGAAAACTTCCTATCCACCTAAAGATGAGACATAG
AAATAAGGCAACCCATTCAGAA
back to top

protein sequence of jgi.p|Nanoce1779_2|606910

>mRNA_9721-protein ID=mRNA_9721-protein|Name=jgi.p|Nanoce1779_2|606910|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
MGRMHSSGKGMASSAIPYKRTPPSWVKATAKDVEEHVCKLAKKGLTPSNI
GVILRDSYGIAQVKSVTGSKILRLLKKNLLAPEIPEDLYMLIKKAVAVRK
HLERNRKDKDSKFRLILIESRIHRLARYYRTTRKLTPNWKYESSTAASLV
A*
back to top

mRNA from alignment at scaffold_37:7964..9330-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9721 ID=mRNA_9721|Name=jgi.p|Nanoce1779_2|606910|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp|location=Sequence derived from alignment at scaffold_37:7964..9330- (Nannochloropsis oceanica)
ACAGGCATTTATCTATCGTTGAAGACTTCTTCCTCCGGTAGATCTTAGCC
AAGGTAAGAAGAGGGGCATGCAGCAAGGAGAAAGAAATGATGCATGATGA
GGAATAGAAGGGGAGGAGGGAGGGATATGATGGGAAGCGAAAGCGCATAT
TCTGGTGGTCTGCTGCCTGATGGGGACGCGTCTAGCTGTGACACTGAGGA
CGGTGGCTGCTGGTGGCTGCGGGCGCTGCCTTGGTGATCAATGGGAGTAA
AGGGAGGGAAGGAGGTAGCGTGAACGGATGACGCGGAGAAGTTTAGGGGT
CTCTTTACGTATCGCCCCTGCCGCCCGCCTCTCTGCGATAAATGTGCCTG
TTACCCTGCAGCCTCTATTCTTCACTGTGTTCCTGTTTTCCAACAGCCTC
TATTCTTCCCTGTCTTTTGTTGCAGTGGCGTCATCCTCTCTTTGCCCCAG
TCGTCGTTCTCTCGACTCACTCACTCCCCCCCTCCTTCCCTCCCTCCATC
CACAGATGGGTCGCATGCACAGCTCCGGCAAGGGCATGGCCTCCTCCGCC
ATCCCCTACAAGCGCACCCCCCCTTCGTGGGTCAAGGCCACGGCCAAGGA
TGTGGAGGAGCACGTGTGCAAGCTGGCGAAGAAGGGCCTGACCCCTTCCA
ACATCGGTGTGATTCTTAGGGACTCCTACGGCATTGCGCAGGTCAAGTCC
GTGACCGGCTCTAAGATTTTGCGTCTGCTCAAGAAGAACCTCCTGGCTCC
GGAAATTCCCGAGGATCTGTACATGTTGATCAAGAAAGCCGTGGCTGTGC
GTAAGCATTTGGAGCGCAACCGCAAGGATAAGGACAGCAAATTCCGCCTC
ATTCTCATCGAGAGCCGCATTCACCGATTGGTACGTCGCGCACCTGTATT
CCTTCCTTCCTTCCTCCTCACCTTTGTTGCGCCTAGATTCCATGTGTGTG
CGACGGAGCATGCAAGGTGTTATTCGAATCATGGTTTTCGTCGGATGTCG
CCATTGTTACTTACTCTCTTTCTCTTTCCCTCCCTCCCTCCCTCCCTCTC
CCTCCTTTCCTCCCTCCCCGCAGGCCCGCTACTACCGAACGACCCGCAAG
CTGACCCCCAACTGGAAGTACGAGTCTTCGACGGCCGCGTCTCTGGTGGC
GTAAACATCGCCTCATGCTGAAGGAGGGAAGGAGGGAAGGAGAGAGGATG
GGTGAGAAGGGTCTTTATCCGATGGTGGGCTTAGGCTGAGCTTGCGGATA
GACAGGAGCTGAACTTCTGTTGTTCTGGGGGTAGGCAAATGAAGGAAGAA
AGGAGAAGGGCGAAAACTTCCTATCCACCTAAAGATGAGACATAGAAATA
AGGCAACCCATTCAGAA
back to top

Coding sequence (CDS) from alignment at scaffold_37:7964..9330-

>mRNA_9721 ID=mRNA_9721|Name=jgi.p|Nanoce1779_2|606910|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_37:7964..9330- (Nannochloropsis oceanica)
GCCCGCTACTACCGAACGACCCGCAAGCTGACCCCCAACTGGAAGTACGA
GTCTTCGACGGCCGCGTCTCTGGTGGCGTAAATGGGTCGCATGCACAGCT
CCGGCAAGGGCATGGCCTCCTCCGCCATCCCCTACAAGCGCACCCCCCCT
TCGTGGGTCAAGGCCACGGCCAAGGATGTGGAGGAGCACGTGTGCAAGCT
GGCGAAGAAGGGCCTGACCCCTTCCAACATCGGTGTGATTCTTAGGGACT
CCTACGGCATTGCGCAGGTCAAGTCCGTGACCGGCTCTAAGATTTTGCGT
CTGCTCAAGAAGAACCTCCTGGCTCCGGAAATTCCCGAGGATCTGTACAT
GTTGATCAAGAAAGCCGTGGCTGTGCGTAAGCATTTGGAGCGCAACCGCA
AGGATAAGGACAGCAAATTCCGCCTCATTCTCATCGAGAGCCGCATTCAC
CGATTGGCCCGCTACTACCGAACGACCCGCAAGCTGACCCCCAACTGGAA
GTACGAGTCTTCGACGGCCGCGTCTCTGGTGGCGTAAATGGGTCGCATGC
ACAGCTCCGGCAAGGGCATGGCCTCCTCCGCCATCCCCTACAAGCGCACC
CCCCCTTCGTGGGTCAAGGCCACGGCCAAGGATGTGGAGGAGCACGTGTG
CAAGCTGGCGAAGAAGGGCCTGACCCCTTCCAACATCGGTGTGATTCTTA
GGGACTCCTACGGCATTGCGCAGGTCAAGTCCGTGACCGGCTCTAAGATT
TTGCGTCTGCTCAAGAAGAACCTCCTGGCTCCGGAAATTCCCGAGGATCT
GTACATGTTGATCAAGAAAGCCGTGGCTGTGCGTAAGCATTTGGAGCGCA
ACCGCAAGGATAAGGACAGCAAATTCCGCCTCATTCTCATCGAGAGCCGC
ATTCACCGATTG
back to top
Synonyms
Publications