jgi.p|Nanoce1779_2|269406, mRNA_9297 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|269406
Unique Name	mRNA_9297
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2638
Alignment location	scaffold_35:17757..20394 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	269492
Track	FilteredModels2
ProteinId	269406

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_35	supercontig	scaffold_35:17757..20394 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|269406	gene_9297	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|269406	mRNA_9297-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9297	CDS_9297	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_35:17757..20394+
coding sequence from alignment at scaffold_35:17757..20394+

mRNA sequence

>mRNA_9297 ID=mRNA_9297|Name=jgi.p|Nanoce1779_2|269406|organism=Nannochloropsis oceanica|type=mRNA|length=2638bp
AATAACAATGGAGAGTCCGAAAAGTGGTCTAAATACATGTGCTGCTTGGG
CGAGTGAAAGGGATCTAAAGTCATGCGCATGCCTGCAGAAGAAGGACCCG
ATCGCAGGATTGCGTGGGTAAGCCCAGGCGAGTCGCTGTCACGGTAGTTT
TGGGCGTTGCGGCAACGGTCAGGATGTCCCAAAAACTTGTGCGGACAATC
GACTATGACCACATGGATAGACTCTGTGCAATTCATGGGATATTACATGC
CTCTGTACCGCACAAACCTGGTATGTCCATTCCCGACACACACGCGTTTG
ACCTCCCCTCTCTCCCCTACCACCCCAATTCCCAATTCCATCACCCCTCC
CTTCTCCCCACTCACAGGACCATCGACCGCACGCACCATGTCCCAGTCCA
TCCTTCCTTGTCTCATCGGCCATCAACATTTTTATCGCCCCGCCTTGGCC
TAGGCCTGGGCCCGGGTAGCATGAGCTTTCTCTTCTTCTACCTGGGGCTC
TGGGCCGCTGCTGCCTTTTTGCGCTATCGTACCTTGCGGCAGGGCTTGCT
TCCCTGGTCACGCAGAAGGGGGCGATACACCTGGAGTTTCACAGGATGGG
CTATCGTGTGGGAGTGCAAGACTTCCTCAAGTTCCTTTCCATTTGCGTCC
TCTCTGCCCCTCCACCGGAGCACTGAGAACAACAATGAGCGCGAACGTGA
CCCTCCATACTATGAAAACGGCAAAGCGGACAAGAAAAAGAGCTTTCTTC
TCAAGGATAATCTCAGTATTGTGGCGTTTATCATCGGGCAGGTCCTTGTC
ATCCTTTTTCTTGCCTGGAATTGCTGTGTTACTCTCCTTCAATCTTCCTT
TTCCTCCTCCTCCTTCTCCTCCTCTTCTCTCCCTCCGTCCTTTTCCGACG
ATTACGGCCGCACCCACCAGCACGAGCAACACCGTCGTCTTTCTACCGCC
ATCCCTTCTTCCTTCTCCTCTTCCTATTCCTCCTACTCTCCCTTCCCCTT
CTCCTTCCACATCGCCACCTACCTCAAGCCCCTCTCCCTCCTCCCCTCCT
CCTCCTCTTCCTCTTCCCCCTCCTCCCTCCTTCTCCTCTGGCTCGCCTCC
CTACTCTCCCTCCTCATCCACGAATGGGGCCATGCTCGGTGGGCCATCAA
AGAAGGCATAGGATATCAAGCCTTTGGTGTCTACCTCGCCCTTGGCCTCC
TCCCAGGTGCCTACGTCCTCCTCGACCCCTCCCTCCTTTCCTCCCTCCCT
CCACTCCCCCAGCTTCGAGTCATCTGCGCCGGGATTTGGCACAACCTTCT
GCTTTGCATTTGCCTCGCCTTTCTCCTCCTCACGGACCTTGCCTCTTGGC
CAGTCTCCACCACCAACCAAGGCATCCTCCTCCTCCCTCCCCCTGCTTTC
CTCCCTCCCTCCTCCCCCCTCTTCCACCTCCTCCGCCCCGGCGAGATCCT
TTCCTCCCTCCAAGACACCCCCACGCCTTCCCTCTCTACCTACTACTCCC
TCCTCGAGCAGCAAGTGAATCTCACGGCCCATAGAGCCCGTGCCCTCTCC
TCCTTAATCCCTAATCCACAAATGGCCAACGCCACCATCACCCGTCTCCT
CGAAAACCTCCTTCCCGCCCTCCCTTTCCCCAACCCTCCCTTCCTCCCTC
CCATTGCCGCAGTAGACACGGCAGGCTTGCTGCAATCCGAGACATTTTGC
ACTTCACTCAACCTCCTCTCTCCCCAGCATATGAAGGGTGGGAAGGAGGG
AGGGAAGGACGGTAGACGCCTCCCGCATTGTTGTACGTTTGATGCACTGA
CCGGTGAGGAAGGTAAGGAGGGAGAGAGGGGCAAAGAGGCCAACGAAGGA
GCGACGTGCTTCGCTGCCTTTGATCTGCTGCTAAAGCAGCAACTTTTCCC
CACTCCTCCTCCCTCCCTCTCAACCTCCTTCCCTCCCTCCTCCTCTTTCG
TCACCCTCACCTGCCTTCCCGCCCGCGACGTCCTCCTCCACTCCACCCTC
TTTTCTTCGGCCCCTCCCTCCCTCCCTCCCTCCTCCATTTGCCTTCGTCC
CGTCAACCTCCCTCCCAACGTCCTCCTCAAACTCACACTTTCCTCCTCCC
ACGTCCTCGCCTACGAGGGCCCCCTCCACCCCTTCCTCCCCCCCATCTCC
CCCCCCTCCCTCATCACTGACCATCATCCCCGACCCTGGCTCAAGGCTGT
CCTCCCTCCCTCCCTGGCCCTCGCCCTCTCCCCCTTCCTCCTGCGGTTGA
TCGCTGCCATGCTCGATGTGTCTTTTTCGGTAGCGGCTGTTAATGTGCTG
CCATGTCCCAGCTTGGACGGCATGCATGCCTTAGGCCTTTTCTTGAGGCT
CGTGTTCGGAGGGGGGAGGGGAAGGAGGAGGGAGAGGGGGAGGGGGAAGG
AGGAGGTTGTGAGTGCGTGGGTGAGGTGGGGAGTGGGAGGGCTTGTGGTG
GTGAATGTGGTGCTGTCACTGCTGGCTGCATGGGAAGGGAGGGGGGGGGA
AGCGTAGGAGAAGGAAGAGGAGGAGAAAGCGGATGTGATGGAGGAAGACA
AGAGAAGGAAGAGGAGGGAGGGGGAGGAAATACCGGAAGAGGAGGAGGGA
GAGGAGGAGGAGGAGGAGGAGGAACAGTTGGGTCTATG

protein sequence of jgi.p|Nanoce1779_2|269406

>mRNA_9297-protein ID=mRNA_9297-protein|Name=jgi.p|Nanoce1779_2|269406|organism=Nannochloropsis oceanica|type=polypeptide|length=778bp
MSQKLVRTIDYDHMDRLCAIHGILHASVPHKPGMSIPDTHAFDLPSLPYH
PNSQFHHPSLLPTHRTIDRTHHVPVHPSLSHRPSTFLSPRLGLGLGPGSM
SFLFFYLGLWAAAAFLRYRTLRQGLLPWSRRRGRYTWSFTGWAIVWECKT
SSSSFPFASSLPLHRSTENNNERERDPPYYENGKADKKKSFLLKDNLSIV
AFIIGQVLVILFLAWNCCVTLLQSSFSSSSFSSSSLPPSFSDDYGRTHQH
EQHRRLSTAIPSSFSSSYSSYSPFPFSFHIATYLKPLSLLPSSSSSSSPS
SLLLLWLASLLSLLIHEWGHARWAIKEGIGYQAFGVYLALGLLPGAYVLL
DPSLLSSLPPLPQLRVICAGIWHNLLLCICLAFLLLTDLASWPVSTTNQG
ILLLPPPAFLPPSSPLFHLLRPGEILSSLQDTPTPSLSTYYSLLEQQVNL
TAHRARALSSLIPNPQMANATITRLLENLLPALPFPNPPFLPPIAAVDTA
GLLQSETFCTSLNLLSPQHMKGGKEGGKDGRRLPHCCTFDALTGEEGKEG
ERGKEANEGATCFAAFDLLLKQQLFPTPPPSLSTSFPPSSSFVTLTCLPA
RDVLLHSTLFSSAPPSLPPSSICLRPVNLPPNVLLKLTLSSSHVLAYEGP
LHPFLPPISPPSLITDHHPRPWLKAVLPPSLALALSPFLLRLIAAMLDVS
FSVAAVNVLPCPSLDGMHALGLFLRLVFGGGRGRRRERGRGKEEVVSAWV
RWGVGGLVVVNVVLSLLAAWEGRGGEA*

mRNA from alignment at scaffold_35:17757..20394+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9297 ID=mRNA_9297|Name=jgi.p|Nanoce1779_2|269406|organism=Nannochloropsis oceanica|type=mRNA|length=2638bp|location=Sequence derived from alignment at scaffold_35:17757..20394+ (Nannochloropsis oceanica)
AATAACAATGGAGAGTCCGAAAAGTGGTCTAAATACATGTGCTGCTTGGG
CGAGTGAAAGGGATCTAAAGTCATGCGCATGCCTGCAGAAGAAGGACCCG
ATCGCAGGATTGCGTGGGTAAGCCCAGGCGAGTCGCTGTCACGGTAGTTT
TGGGCGTTGCGGCAACGGTCAGGATGTCCCAAAAACTTGTGCGGACAATC
GACTATGACCACATGGATAGACTCTGTGCAATTCATGGGATATTACATGC
CTCTGTACCGCACAAACCTGGTATGTCCATTCCCGACACACACGCGTTTG
ACCTCCCCTCTCTCCCCTACCACCCCAATTCCCAATTCCATCACCCCTCC
CTTCTCCCCACTCACAGGACCATCGACCGCACGCACCATGTCCCAGTCCA
TCCTTCCTTGTCTCATCGGCCATCAACATTTTTATCGCCCCGCCTTGGCC
TAGGCCTGGGCCCGGGTAGCATGAGCTTTCTCTTCTTCTACCTGGGGCTC
TGGGCCGCTGCTGCCTTTTTGCGCTATCGTACCTTGCGGCAGGGCTTGCT
TCCCTGGTCACGCAGAAGGGGGCGATACACCTGGAGTTTCACAGGATGGG
CTATCGTGTGGGAGTGCAAGACTTCCTCAAGTTCCTTTCCATTTGCGTCC
TCTCTGCCCCTCCACCGGAGCACTGAGAACAACAATGAGCGCGAACGTGA
CCCTCCATACTATGAAAACGGCAAAGCGGACAAGAAAAAGAGCTTTCTTC
TCAAGGATAATCTCAGTATTGTGGCGTTTATCATCGGGCAGGTCCTTGTC
ATCCTTTTTCTTGCCTGGAATTGCTGTGTTACTCTCCTTCAATCTTCCTT
TTCCTCCTCCTCCTTCTCCTCCTCTTCTCTCCCTCCGTCCTTTTCCGACG
ATTACGGCCGCACCCACCAGCACGAGCAACACCGTCGTCTTTCTACCGCC
ATCCCTTCTTCCTTCTCCTCTTCCTATTCCTCCTACTCTCCCTTCCCCTT
CTCCTTCCACATCGCCACCTACCTCAAGCCCCTCTCCCTCCTCCCCTCCT
CCTCCTCTTCCTCTTCCCCCTCCTCCCTCCTTCTCCTCTGGCTCGCCTCC
CTACTCTCCCTCCTCATCCACGAATGGGGCCATGCTCGGTGGGCCATCAA
AGAAGGCATAGGATATCAAGCCTTTGGTGTCTACCTCGCCCTTGGCCTCC
TCCCAGGTGCCTACGTCCTCCTCGACCCCTCCCTCCTTTCCTCCCTCCCT
CCACTCCCCCAGCTTCGAGTCATCTGCGCCGGGATTTGGCACAACCTTCT
GCTTTGCATTTGCCTCGCCTTTCTCCTCCTCACGGACCTTGCCTCTTGGC
CAGTCTCCACCACCAACCAAGGCATCCTCCTCCTCCCTCCCCCTGCTTTC
CTCCCTCCCTCCTCCCCCCTCTTCCACCTCCTCCGCCCCGGCGAGATCCT
TTCCTCCCTCCAAGACACCCCCACGCCTTCCCTCTCTACCTACTACTCCC
TCCTCGAGCAGCAAGTGAATCTCACGGCCCATAGAGCCCGTGCCCTCTCC
TCCTTAATCCCTAATCCACAAATGGCCAACGCCACCATCACCCGTCTCCT
CGAAAACCTCCTTCCCGCCCTCCCTTTCCCCAACCCTCCCTTCCTCCCTC
CCATTGCCGCAGTAGACACGGCAGGCTTGCTGCAATCCGAGACATTTTGC
ACTTCACTCAACCTCCTCTCTCCCCAGCATATGAAGGGTGGGAAGGAGGG
AGGGAAGGACGGTAGACGCCTCCCGCATTGTTGTACGTTTGATGCACTGA
CCGGTGAGGAAGGTAAGGAGGGAGAGAGGGGCAAAGAGGCCAACGAAGGA
GCGACGTGCTTCGCTGCCTTTGATCTGCTGCTAAAGCAGCAACTTTTCCC
CACTCCTCCTCCCTCCCTCTCAACCTCCTTCCCTCCCTCCTCCTCTTTCG
TCACCCTCACCTGCCTTCCCGCCCGCGACGTCCTCCTCCACTCCACCCTC
TTTTCTTCGGCCCCTCCCTCCCTCCCTCCCTCCTCCATTTGCCTTCGTCC
CGTCAACCTCCCTCCCAACGTCCTCCTCAAACTCACACTTTCCTCCTCCC
ACGTCCTCGCCTACGAGGGCCCCCTCCACCCCTTCCTCCCCCCCATCTCC
CCCCCCTCCCTCATCACTGACCATCATCCCCGACCCTGGCTCAAGGCTGT
CCTCCCTCCCTCCCTGGCCCTCGCCCTCTCCCCCTTCCTCCTGCGGTTGA
TCGCTGCCATGCTCGATGTGTCTTTTTCGGTAGCGGCTGTTAATGTGCTG
CCATGTCCCAGCTTGGACGGCATGCATGCCTTAGGCCTTTTCTTGAGGCT
CGTGTTCGGAGGGGGGAGGGGAAGGAGGAGGGAGAGGGGGAGGGGGAAGG
AGGAGGTTGTGAGTGCGTGGGTGAGGTGGGGAGTGGGAGGGCTTGTGGTG
GTGAATGTGGTGCTGTCACTGCTGGCTGCATGGGAAGGGAGGGGGGGGGA
AGCGTAGGAGAAGGAAGAGGAGGAGAAAGCGGATGTGATGGAGGAAGACA
AGAGAAGGAAGAGGAGGGAGGGGGAGGAAATACCGGAAGAGGAGGAGGGA
GAGGAGGAGGAGGAGGAGGAGGAACAGTTGGGTCTATG

Coding sequence (CDS) from alignment at scaffold_35:17757..20394+

>mRNA_9297 ID=mRNA_9297|Name=jgi.p|Nanoce1779_2|269406|organism=Nannochloropsis oceanica|type=CDS|length=2334bp|location=Sequence derived from alignment at scaffold_35:17757..20394+ (Nannochloropsis oceanica)
ATGTCCCAAAAACTTGTGCGGACAATCGACTATGACCACATGGATAGACT
CTGTGCAATTCATGGGATATTACATGCCTCTGTACCGCACAAACCTGGTA
TGTCCATTCCCGACACACACGCGTTTGACCTCCCCTCTCTCCCCTACCAC
CCCAATTCCCAATTCCATCACCCCTCCCTTCTCCCCACTCACAGGACCAT
CGACCGCACGCACCATGTCCCAGTCCATCCTTCCTTGTCTCATCGGCCAT
CAACATTTTTATCGCCCCGCCTTGGCCTAGGCCTGGGCCCGGGTAGCATG
AGCTTTCTCTTCTTCTACCTGGGGCTCTGGGCCGCTGCTGCCTTTTTGCG
CTATCGTACCTTGCGGCAGGGCTTGCTTCCCTGGTCACGCAGAAGGGGGC
GATACACCTGGAGTTTCACAGGATGGGCTATCGTGTGGGAGTGCAAGACT
TCCTCAAGTTCCTTTCCATTTGCGTCCTCTCTGCCCCTCCACCGGAGCAC
TGAGAACAACAATGAGCGCGAACGTGACCCTCCATACTATGAAAACGGCA
AAGCGGACAAGAAAAAGAGCTTTCTTCTCAAGGATAATCTCAGTATTGTG
GCGTTTATCATCGGGCAGGTCCTTGTCATCCTTTTTCTTGCCTGGAATTG
CTGTGTTACTCTCCTTCAATCTTCCTTTTCCTCCTCCTCCTTCTCCTCCT
CTTCTCTCCCTCCGTCCTTTTCCGACGATTACGGCCGCACCCACCAGCAC
GAGCAACACCGTCGTCTTTCTACCGCCATCCCTTCTTCCTTCTCCTCTTC
CTATTCCTCCTACTCTCCCTTCCCCTTCTCCTTCCACATCGCCACCTACC
TCAAGCCCCTCTCCCTCCTCCCCTCCTCCTCCTCTTCCTCTTCCCCCTCC
TCCCTCCTTCTCCTCTGGCTCGCCTCCCTACTCTCCCTCCTCATCCACGA
ATGGGGCCATGCTCGGTGGGCCATCAAAGAAGGCATAGGATATCAAGCCT
TTGGTGTCTACCTCGCCCTTGGCCTCCTCCCAGGTGCCTACGTCCTCCTC
GACCCCTCCCTCCTTTCCTCCCTCCCTCCACTCCCCCAGCTTCGAGTCAT
CTGCGCCGGGATTTGGCACAACCTTCTGCTTTGCATTTGCCTCGCCTTTC
TCCTCCTCACGGACCTTGCCTCTTGGCCAGTCTCCACCACCAACCAAGGC
ATCCTCCTCCTCCCTCCCCCTGCTTTCCTCCCTCCCTCCTCCCCCCTCTT
CCACCTCCTCCGCCCCGGCGAGATCCTTTCCTCCCTCCAAGACACCCCCA
CGCCTTCCCTCTCTACCTACTACTCCCTCCTCGAGCAGCAAGTGAATCTC
ACGGCCCATAGAGCCCGTGCCCTCTCCTCCTTAATCCCTAATCCACAAAT
GGCCAACGCCACCATCACCCGTCTCCTCGAAAACCTCCTTCCCGCCCTCC
CTTTCCCCAACCCTCCCTTCCTCCCTCCCATTGCCGCAGTAGACACGGCA
GGCTTGCTGCAATCCGAGACATTTTGCACTTCACTCAACCTCCTCTCTCC
CCAGCATATGAAGGGTGGGAAGGAGGGAGGGAAGGACGGTAGACGCCTCC
CGCATTGTTGTACGTTTGATGCACTGACCGGTGAGGAAGGTAAGGAGGGA
GAGAGGGGCAAAGAGGCCAACGAAGGAGCGACGTGCTTCGCTGCCTTTGA
TCTGCTGCTAAAGCAGCAACTTTTCCCCACTCCTCCTCCCTCCCTCTCAA
CCTCCTTCCCTCCCTCCTCCTCTTTCGTCACCCTCACCTGCCTTCCCGCC
CGCGACGTCCTCCTCCACTCCACCCTCTTTTCTTCGGCCCCTCCCTCCCT
CCCTCCCTCCTCCATTTGCCTTCGTCCCGTCAACCTCCCTCCCAACGTCC
TCCTCAAACTCACACTTTCCTCCTCCCACGTCCTCGCCTACGAGGGCCCC
CTCCACCCCTTCCTCCCCCCCATCTCCCCCCCCTCCCTCATCACTGACCA
TCATCCCCGACCCTGGCTCAAGGCTGTCCTCCCTCCCTCCCTGGCCCTCG
CCCTCTCCCCCTTCCTCCTGCGGTTGATCGCTGCCATGCTCGATGTGTCT
TTTTCGGTAGCGGCTGTTAATGTGCTGCCATGTCCCAGCTTGGACGGCAT
GCATGCCTTAGGCCTTTTCTTGAGGCTCGTGTTCGGAGGGGGGAGGGGAA
GGAGGAGGGAGAGGGGGAGGGGGAAGGAGGAGGTTGTGAGTGCGTGGGTG
AGGTGGGGAGTGGGAGGGCTTGTGGTGGTGAATGTGGTGCTGTCACTGCT
GGCTGCATGGGAAGGGAGGGGGGGGGAAGCGTAG

Synonyms

Publications