Properties
| Property Name | Value |
|---|
| TranscriptId | 608133 |
| Track | FilteredModels2 |
| ProteinId | 608047 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_40 | supercontig | scaffold_40:85902..87578 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9084 ID=mRNA_9084|Name=jgi.p|Nanoce1779_2|608047|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp
AACAAATTCAGCAATTCGCCAAACCCTCTGCGACATCTAACCCCCCCATC
ACAACCACTACCAGCAGCAGCAGCGGCAGCAGCAGTCCCAGCAGCAGCAG
TAGCCCCAGCAGTGGCATTCCTTCCCTGCCCTCCCTCTCCTTGCCCCCCC
TCCCTCTCCAAGTCCCTCGTCTGGATACAGCATCATTTGGCGCGAGTGCG
GATGCTCGCGTCCACAGCGGGTTCAAAGAGGCCTACCTGTCTGTCCGTCC
GCGCCTTCTGGAGCTGTTGAACAGCGCCACGCAAGGAGGGCTGGAAATAG
GGATGGACGGTGAGGAGGAATGGGAGATTATGACGACCGGCCATTCCCTG
GGGGGCGCGCTGGCTTCTTTATGTGCGCATGATTTGTCGGAGAGACATCC
AGGGCTGAAAGTGTCAATGTATAACTTTGGAGCTCCACGGTTGGGGAACT
CGGCGTTTGCCCAGGCATACAGGGAGGCGAATGGGGACAGTTACAGGGTT
GTGAATGAGCACGATGCTTTTGCTCGGTTCCCGAGGAATGTGCATCCCAC
TCTTTTTAATTACGACCACGCGGGAAAGACGGTTCTGTTGAACAATGCCA
CCTACTGGGTGGAGAAAGAGAAGACAGTGGCTGGAGAGGGAGGAAAGGTG
GAAGGGGCGGTGCCGGTCGCCTCGGTAACGCCGAGCAGCAGCGGCACTTC
CTTTCCTGCGCCGTCACCTTCTCCTCCGCCGGTCGAACTTGAGCCATTGT
TTTTGGAAGCGGAGTGGCAGCTGCTTAATGCACTGCTGAGCGGCGCTGCC
CTCACCTCTCATTTGGAGCATCGATATTTTGAGTCTCTGCTTGCTGCGCA
TATTTCGTCGTGTGTGGAAGAGGAGGAGGACAAGGAAGATGACGAGGAAC
ATAAAGAGGAAAAAGTCAAATCTACCTCCTTTCCTGCTGGCGGGGGTGGA
GCGGCGCCGGGAGGGATGGGTTATTTTGTCGGTCAGTGGTTGAGGGGCCC
GCGAAAGTTTCCTCCTCTGACTGTGGCCAGTGCCCAGAGGCCAGCAGCGT
TGTCGTCTTCGCCCTCCTCCTCTGTCTCGTCCTTGATGGAATAGAGTGAA
AGTGGGTGAGAAAGAGGAGAAACAGACTCGCTCTTGATCTGGCGGGGGGA
GGAGAAAGCAGAGATAAGGGATATAGAGGAGAGAAGAAGACCAGGCATTC
CGTTGCAATCATGCAAACATTTAAATCGTACTGAACAGACCCTCGAGGGA
ACATAAAACACGGGTGGGTGGGATCTTCTGGAGCACACTCTCAAAGTACA
CACCAACTAAACTAGAGCGTTGCCCCTCTTTGTAGATGGGTCCTTCCTGC
CCCCCTCCCCCCTCTTTTTTGAAGCACGCATCACCATAACATTTATAATC
AATAATTAAGGGGCGGAGCAAGAAAAGAGGAGGCACACGTCCCTGTATGA
GAAATGAGAATTGTCTGGCTGTGTAGATTGTGGTGATAATTTTGAGGGCC
TGTGTCCACCTGAAAGAAAAGGTGGATCGGTGTGTAGATAGAGCGAAAAA
GGGAGATTGGCCGGACGCCTAAAGCGCCCTGTCACTGGGCACTGGGTAGG
TGCAAGGGAAGAGGCCTGCGGGGTTTTTTATCGATTACTGCAGATACCCA
AAAAACGAAATTTTGTCCTTTAAAAAT back to topprotein sequence of jgi.p|Nanoce1779_2|608047 >mRNA_9084-protein ID=mRNA_9084-protein|Name=jgi.p|Nanoce1779_2|608047|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MDGEEEWEIMTTGHSLGGALASLCAHDLSERHPGLKVSMYNFGAPRLGNS
AFAQAYREANGDSYRVVNEHDAFARFPRNVHPTLFNYDHAGKTVLLNNAT
YWVEKEKTVAGEGGKVEGAVPVASVTPSSSGTSFPAPSPSPPPVELEPLF
LEAEWQLLNALLSGAALTSHLEHRYFESLLAAHISSCVEEEEDKEDDEEH
KEEKVKSTSFPAGGGGAAPGGMGYFVGQWLRGPRKFPPLTVASAQRPAAL
SSSPSSSVSSLME* back to topmRNA from alignment at scaffold_40:85902..87578+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9084 ID=mRNA_9084|Name=jgi.p|Nanoce1779_2|608047|organism=Nannochloropsis oceanica|type=mRNA|length=1677bp|location=Sequence derived from alignment at scaffold_40:85902..87578+ (Nannochloropsis oceanica)
AACAAATTCAGCAATTCGCCAAACCCTCTGCGACATCTAACCCCCCCATC
ACAACCACTACCAGCAGCAGCAGCGGCAGCAGCAGTCCCAGCAGCAGCAG
TAGCCCCAGCAGTGGCATTCCTTCCCTGCCCTCCCTCTCCTTGCCCCCCC
TCCCTCTCCAAGTCCCTCGTCTGGATACAGCATCATTTGGCGCGAGTGCG
GATGCTCGCGTCCACAGCGGGTTCAAAGAGGCCTACCTGTCTGTCCGTCC
GCGCCTTCTGGAGCTGTTGAACAGCGCCACGCAAGGAGGGCTGGAAATAG
GGATGGACGGTGAGGAGGAATGGGAGATTATGACGACCGGCCATTCCCTG
GGGGGCGCGCTGGCTTCTTTATGTGCGCATGATTTGTCGGAGAGACATCC
AGGGCTGAAAGTGTCAATGTATAACTTTGGAGCTCCACGGTTGGGGAACT
CGGCGTTTGCCCAGGCATACAGGGAGGCGAATGGGGACAGTTACAGGGTT
GTGAATGAGCACGATGCTTTTGCTCGGTTCCCGAGGAATGTGCATCCCAC
TCTTTTTAATTACGACCACGCGGGAAAGACGGTTCTGTTGAACAATGCCA
CCTACTGGGTGGAGAAAGAGAAGACAGTGGCTGGAGAGGGAGGAAAGGTG
GAAGGGGCGGTGCCGGTCGCCTCGGTAACGCCGAGCAGCAGCGGCACTTC
CTTTCCTGCGCCGTCACCTTCTCCTCCGCCGGTCGAACTTGAGCCATTGT
TTTTGGAAGCGGAGTGGCAGCTGCTTAATGCACTGCTGAGCGGCGCTGCC
CTCACCTCTCATTTGGAGCATCGATATTTTGAGTCTCTGCTTGCTGCGCA
TATTTCGTCGTGTGTGGAAGAGGAGGAGGACAAGGAAGATGACGAGGAAC
ATAAAGAGGAAAAAGTCAAATCTACCTCCTTTCCTGCTGGCGGGGGTGGA
GCGGCGCCGGGAGGGATGGGTTATTTTGTCGGTCAGTGGTTGAGGGGCCC
GCGAAAGTTTCCTCCTCTGACTGTGGCCAGTGCCCAGAGGCCAGCAGCGT
TGTCGTCTTCGCCCTCCTCCTCTGTCTCGTCCTTGATGGAATAGAGTGAA
AGTGGGTGAGAAAGAGGAGAAACAGACTCGCTCTTGATCTGGCGGGGGGA
GGAGAAAGCAGAGATAAGGGATATAGAGGAGAGAAGAAGACCAGGCATTC
CGTTGCAATCATGCAAACATTTAAATCGTACTGAACAGACCCTCGAGGGA
ACATAAAACACGGGTGGGTGGGATCTTCTGGAGCACACTCTCAAAGTACA
CACCAACTAAACTAGAGCGTTGCCCCTCTTTGTAGATGGGTCCTTCCTGC
CCCCCTCCCCCCTCTTTTTTGAAGCACGCATCACCATAACATTTATAATC
AATAATTAAGGGGCGGAGCAAGAAAAGAGGAGGCACACGTCCCTGTATGA
GAAATGAGAATTGTCTGGCTGTGTAGATTGTGGTGATAATTTTGAGGGCC
TGTGTCCACCTGAAAGAAAAGGTGGATCGGTGTGTAGATAGAGCGAAAAA
GGGAGATTGGCCGGACGCCTAAAGCGCCCTGTCACTGGGCACTGGGTAGG
TGCAAGGGAAGAGGCCTGCGGGGTTTTTTATCGATTACTGCAGATACCCA
AAAAACGAAATTTTGTCCTTTAAAAAT back to topCoding sequence (CDS) from alignment at scaffold_40:85902..87578+ >mRNA_9084 ID=mRNA_9084|Name=jgi.p|Nanoce1779_2|608047|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_40:85902..87578+ (Nannochloropsis oceanica)
ATGGACGGTGAGGAGGAATGGGAGATTATGACGACCGGCCATTCCCTGGG
GGGCGCGCTGGCTTCTTTATGTGCGCATGATTTGTCGGAGAGACATCCAG
GGCTGAAAGTGTCAATGTATAACTTTGGAGCTCCACGGTTGGGGAACTCG
GCGTTTGCCCAGGCATACAGGGAGGCGAATGGGGACAGTTACAGGGTTGT
GAATGAGCACGATGCTTTTGCTCGGTTCCCGAGGAATGTGCATCCCACTC
TTTTTAATTACGACCACGCGGGAAAGACGGTTCTGTTGAACAATGCCACC
TACTGGGTGGAGAAAGAGAAGACAGTGGCTGGAGAGGGAGGAAAGGTGGA
AGGGGCGGTGCCGGTCGCCTCGGTAACGCCGAGCAGCAGCGGCACTTCCT
TTCCTGCGCCGTCACCTTCTCCTCCGCCGGTCGAACTTGAGCCATTGTTT
TTGGAAGCGGAGTGGCAGCTGCTTAATGCACTGCTGAGCGGCGCTGCCCT
CACCTCTCATTTGGAGCATCGATATTTTGAGTCTCTGCTTGCTGCGCATA
TTTCGTCGTGTGTGGAAGAGGAGGAGGACAAGGAAGATGACGAGGAACAT
AAAGAGGAAAAAGTCAAATCTACCTCCTTTCCTGCTGGCGGGGGTGGAGC
GGCGCCGGGAGGGATGGGTTATTTTGTCGGTCAGTGGTTGAGGGGCCCGC
GAAAGTTTCCTCCTCTGACTGTGGCCAGTGCCCAGAGGCCAGCAGCGTTG
TCGTCTTCGCCCTCCTCCTCTGTCTCGTCCTTGATGGAATAG back to top
|