jgi.p|Nanoce1779_2|633673, mRNA_9083 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633673
Unique Name	mRNA_9083
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1347
Alignment location	scaffold_40:83573..85145 +

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Properties


Property Name	Value
TranscriptId	633759
Track	FilteredModels2
ProteinId	633673

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:83573..85145 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633673	gene_9083	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633673	mRNA_9083-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9083	CDS_9083	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:83573..85145+
coding sequence from alignment at scaffold_40:83573..85145+

mRNA sequence

>mRNA_9083 ID=mRNA_9083|Name=jgi.p|Nanoce1779_2|633673|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
GGTGGTTGTAGCAGCAGCGGGAAGGTGATGATTGATGCTGCAGTGTCGGT
GGAGATGGGGGAAGAGTATGTGGCCACGCGGGTGCTAAAATTGCAGAGAC
GTTCAATGGTGGAGGGAACAGAGGAAGGAGGGGAAGGACGGAGGCATGCG
TACGTCCCAGTTCCTTGTGCAGAAGGAAAAGGTGCCATGTTTGAGGTATT
CGTAAAGGAGCCCTGGGGGCACCTGCTGGAGGAAGGGGAGAAGAGAGGCC
AAAGCAGCAGCAGCAGAGGCAGTGGAGGAGAAAGGAAAAAGGAGCTGCGC
ATCACGATCAAGGGCAAAGATGATCTTCCTCTTGGCGTGGCGTCTGTGGA
TCTTTCTGTCCTCCTATCCCAGGTGCGGAAGAGCAGCAGCAGCAGCAGCA
AGGGTATCATCACAACGACATGGCGGAGGGATCTGTCTCTAACGACCTTG
ATGACTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAACAAGAAG
AGGGGGGGGGCAGCATCTACCAGGACCCTTTGTGAAATTACAGCACCAAG
AGGGAAATGATAAGGGGGAGGAGGCTCGGCAGCGCTTGGCAGAAGTAGCA
CTGGGGGTTCGTGTGGAAGTCGATATGGAATATATCCGCTTCACCCCCCC
GTCCTCTCACCTTTGCTCTTCCATATCCTCCGCTTCCTCCGCCCCACTCC
ATTCTACACCATCCATGACGTCGTTACAAGCCACCAGTAGCAGTGCGAGC
AACAGCGTCAAGACCAGTCCTCCTGCTCCCCTCGAGAAGGAGTGGTTGGG
TGCCACGGGCTGCTCTAGGGATTGGAGAGATCTAGCCGAGGCTCTTGGGG
GGGATGCGGCTACTGCAGCGGATTTCGAATTGTTGTGTTTCTTAGAAAAC
AGGGAGACGGACACGCAAGTCAAAGTCTGGAGGGACCGGGGGAGAGGGAG
AGATGGGGGCAGGAAGCGGTTGTTGGTTGCGTTCAGGGGGACAGAGTTTT
GGAAGATGAGGGACCTCATCACAGACTTGAAGCTCGTCCAGGAGCCCTGG
GATGCCAAGAGATTGGATAGGAAGGAGGTACAAAAAGAGGGAGAGATTCT
TAAGGGACAGCAGCAACATCAACAACATCAACAACAACAACAACAACAGC
AAAACCACCAGCAGCAGCAGCAGGCGTTGGATTTCTATGCTGCGTTGGCC
ACCCAGGCAAATCGGACCTTCTTGCTCTACAACGACATGGACAGGGCCGT
CAAAGACATGTTCGGCTACGTCTGGAAAATACTCTCTCCTCCTCGTCTCC
TCCGGTCTTCTCTGCCCCTGGTCTTCACTCCTCGGATGCCAGTCTGA

protein sequence of jgi.p|Nanoce1779_2|633673

>mRNA_9083-protein ID=mRNA_9083-protein|Name=jgi.p|Nanoce1779_2|633673|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MIDAAVSVEMGEEYVATRVLKLQRRSMVEGTEEGGEGRRHAYVPVPCAEG
KGAMFEVFVKEPWGHLLEEGEKRGQSSSSRGSGGERKKELRITIKGKDDL
PLGVASVDLSVLLSQVRKSSSSSSKGIITTTWRRDLSLTTLMTGGGGGGG
GGGGGTRRGGGQHLPGPFVKLQHQEGNDKGEEARQRLAEVALGVRVEVDM
EYIRFTPPSSHLCSSISSASSAPLHSTPSMTSLQATSSSASNSVKTSPPA
PLEKEWLGATGCSRDWRDLAEALGGDAATAADFELLCFLENRETDTQVKV
WRDRGRGRDGGRKRLLVAFRGTEFWKMRDLITDLKLVQEPWDAKRLDRKE
VQKEGEILKGQQQHQQHQQQQQQQQNHQQQQQALDFYAALATQANRTFLL
YNDMDRAVKDMFGYVWKILSPPRLLRSSLPLVFTPRMPV*

mRNA from alignment at scaffold_40:83573..85145+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9083 ID=mRNA_9083|Name=jgi.p|Nanoce1779_2|633673|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp|location=Sequence derived from alignment at scaffold_40:83573..85145+ (Nannochloropsis oceanica)
GGTGGTTGTAGCAGCAGCGGGAAGGTGATGATTGATGCTGCAGTGTCGGT
GGAGATGGGGGAAGAGTATGTGGCCACGCGGGTGCTAAAATTGCAGAGAC
GTTCAATGGTGGAGGGAACAGAGGAAGGAGGGGAAGGACGGAGGCATGCG
TACGTCCCAGTTCCTTGTGCAGAAGGAAAAGGTGCCATGTTTGAGGTATT
CGTAAAGGAGCCCTGGGGGCACCTGCTGGAGGAAGGGGAGAAGAGAGGCC
AAAGCAGCAGCAGCAGAGGCAGTGGAGGAGAAAGGAAAAAGGAGCTGCGC
ATCACGATCAAGGGCAAAGATGATCTTCCTCTTGGCGTGGCGTCTGTGGA
TCTTTCTGTCCTCCTATCCCAGGTGCGGAAGAGCAGCAGCAGCAGCAGCA
AGGGTATCATCACAACGACATGGCGGAGGGATCTGTCTCTAACGACCTTG
ATGACTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAACAAGAAG
AGGGGGGGGGCAGCATCTACCAGGACCCTTTGTGAAATTACAGCACCAAG
AGGGAAATGATAAGGGGGAGGAGGCTCGGCAGCGCTTGGCAGAAGTAGCA
CTGGGGGTTCGTGTGGAAGTCGATATGGAATATATCCGCTTCACCCCCCC
GTCCTCTCACCTTTGCTCTTCCATATCCTCCGCTTCCTCCGCCCCACTCC
ATTCTACACCATCCATGACGTCGTTACAAGCCACCAGTAGCAGTGCGAGC
AACAGCGTCAAGACCAGTCCTCCTGCTCCCCTCGAGAAGGAGTGGTTGGG
TGCCACGGGCTGCTCTAGGGATTGGAGAGATCTAGCCGAGGCTCTTGGGG
GGGATGCGGCTACTGCAGCGGATTTCGAATTGTTGTGTTTCTTAGAAAAC
AGGGAGACGGACACGCAAGTCAAAGTCTGGAGGGACCGGGGGAGAGGGAG
AGATGGGGGCAGGAAGCGGTTGTTGGTTGCGTTCAGGGGGACAGAGTTTT
GGAAGATGAGGGACCTCATCACAGACTTGAAGCTCGTCCAGGAGCCCTGG
GATGCCAAGAGATTGGATAGGAAGGAGGTACAAAAAGAGGGAGAGATTCT
TAAGGGACAGCAGCAACATCAACAACATCAACAACAACAACAACAACAGC
AAAACCACCAGCAGCAGCAGCAGGCGTTGGATTTCTATGCTGCGTTGGCC
ACCCAGGCAAATCGGACCTTCTTGCTCTACAACGACATGGACAGGGCCGT
CAAAGACATGTTCGGCTACGTCTGGAAAAGTACCAACATGTTTTTCGGTA
ATAGCAATGGGGGGAACAGCAGCAATATCCCTCCCTTGTCCTCCGTTCCT
TCCTCCTCGCTCTCGTCGTCCTGGACAGGCCTGTCTCCCTCTCTCTCCCA
CTCCCATGTCGCCTCGGGCCCGCACCACCTACTCCTCGCCACACCCCCTT
CCTCCTCTTTTGCTCACCCCTCCTCCTTTTGCGCCTCCTCGTCCTCCCCC
TACAGTACTCTCTCCTCCTCGTCTCCTCCGGTCTTCTCTGCCCCTGGTCT
TCACTCCTCGGATGCCAGTCTGA

Coding sequence (CDS) from alignment at scaffold_40:83573..85145+

>mRNA_9083 ID=mRNA_9083|Name=jgi.p|Nanoce1779_2|633673|organism=Nannochloropsis oceanica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_40:83573..85145+ (Nannochloropsis oceanica)
ATGATTGATGCTGCAGTGTCGGTGGAGATGGGGGAAGAGTATGTGGCCAC
GCGGGTGCTAAAATTGCAGAGACGTTCAATGGTGGAGGGAACAGAGGAAG
GAGGGGAAGGACGGAGGCATGCGTACGTCCCAGTTCCTTGTGCAGAAGGA
AAAGGTGCCATGTTTGAGGTATTCGTAAAGGAGCCCTGGGGGCACCTGCT
GGAGGAAGGGGAGAAGAGAGGCCAAAGCAGCAGCAGCAGAGGCAGTGGAG
GAGAAAGGAAAAAGGAGCTGCGCATCACGATCAAGGGCAAAGATGATCTT
CCTCTTGGCGTGGCGTCTGTGGATCTTTCTGTCCTCCTATCCCAGGTGCG
GAAGAGCAGCAGCAGCAGCAGCAAGGGTATCATCACAACGACATGGCGGA
GGGATCTGTCTCTAACGACCTTGATGACTGGTGGTGGAGGAGGAGGAGGA
GGAGGAGGAGGGGGAACAAGAAGAGGGGGGGGGCAGCATCTACCAGGACC
CTTTGTGAAATTACAGCACCAAGAGGGAAATGATAAGGGGGAGGAGGCTC
GGCAGCGCTTGGCAGAAGTAGCACTGGGGGTTCGTGTGGAAGTCGATATG
GAATATATCCGCTTCACCCCCCCGTCCTCTCACCTTTGCTCTTCCATATC
CTCCGCTTCCTCCGCCCCACTCCATTCTACACCATCCATGACGTCGTTAC
AAGCCACCAGTAGCAGTGCGAGCAACAGCGTCAAGACCAGTCCTCCTGCT
CCCCTCGAGAAGGAGTGGTTGGGTGCCACGGGCTGCTCTAGGGATTGGAG
AGATCTAGCCGAGGCTCTTGGGGGGGATGCGGCTACTGCAGCGGATTTCG
AATTGTTGTGTTTCTTAGAAAACAGGGAGACGGACACGCAAGTCAAAGTC
TGGAGGGACCGGGGGAGAGGGAGAGATGGGGGCAGGAAGCGGTTGTTGGT
TGCGTTCAGGGGGACAGAGTTTTGGAAGATGAGGGACCTCATCACAGACT
TGAAGCTCGTCCAGGAGCCCTGGGATGCCAAGAGATTGGATAGGAAGGAG
GTACAAAAAGAGGGAGAGATTCTTAAGGGACAGCAGCAACATCAACAACA
TCAACAACAACAACAACAACAGCAAAACCACCAGCAGCAGCAGCAGGCGT
TGGATTTCTATGCTGCGTTGGCCACCCAGGCAAATCGGACCTTCTTGCTC
TACAACGACATGGACAGGGCCGTCAAAGACATGTTCGGCTACGTCTGGAA
AATACTCTCTCCTCCTCGTCTCCTCCGGTCTTCTCTGCCCCTGGTCTTCA
CTCCTCGGATGCCAGTCTGAATGATTGATGCTGCAGTGTCGGTGGAGATG
GGGGAAGAGTATGTGGCCACGCGGGTGCTAAAATTGCAGAGACGTTCAAT
GGTGGAGGGAACAGAGGAAGGAGGGGAAGGACGGAGGCATGCGTACGTCC
CAGTTCCTTGTGCAGAAGGAAAAGGTGCCATGTTTGAGGTATTCGTAAAG
GAGCCCTGGGGGCACCTGCTGGAGGAAGGGGAGAAGAGAGGCCAAAGCAG
CAGCAGCAGAGGCAGTGGAGGAGAAAGGAAAAAGGAGCTGCGCATCACGA
TCAAGGGCAAAGATGATCTTCCTCTTGGCGTGGCGTCTGTGGATCTTTCT
GTCCTCCTATCCCAGGTGCGGAAGAGCAGCAGCAGCAGCAGCAAGGGTAT
CATCACAACGACATGGCGGAGGGATCTGTCTCTAACGACCTTGATGACTG
GTGGTGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAACAAGAAGAGGGGGG
GGGCAGCATCTACCAGGACCCTTTGTGAAATTACAGCACCAAGAGGGAAA
TGATAAGGGGGAGGAGGCTCGGCAGCGCTTGGCAGAAGTAGCACTGGGGG
TTCGTGTGGAAGTCGATATGGAATATATCCGCTTCACCCCCCCGTCCTCT
CACCTTTGCTCTTCCATATCCTCCGCTTCCTCCGCCCCACTCCATTCTAC
ACCATCCATGACGTCGTTACAAGCCACCAGTAGCAGTGCGAGCAACAGCG
TCAAGACCAGTCCTCCTGCTCCCCTCGAGAAGGAGTGGTTGGGTGCCACG
GGCTGCTCTAGGGATTGGAGAGATCTAGCCGAGGCTCTTGGGGGGGATGC
GGCTACTGCAGCGGATTTCGAATTGTTGTGTTTCTTAGAAAACAGGGAGA
CGGACACGCAAGTCAAAGTCTGGAGGGACCGGGGGAGAGGGAGAGATGGG
GGCAGGAAGCGGTTGTTGGTTGCGTTCAGGGGGACAGAGTTTTGGAAGAT
GAGGGACCTCATCACAGACTTGAAGCTCGTCCAGGAGCCCTGGGATGCCA
AGAGATTGGATAGGAAGGAGGTACAAAAAGAGGGAGAGATTCTTAAGGGA
CAGCAGCAACATCAACAACATCAACAACAACAACAACAACAGCAAAACCA
CCAGCAGCAGCAGCAGGCGTTGGATTTCTATGCTGCGTTGGCCACCCAGG
CAAATCGGACCTTCTTGCTCTACAACGACATGGACAGGGCCGTCAAAGAC
ATGTTCGGCTACGTCTGGAAAATACTCTCTCCTCCTCGTCTCCTCCGGTC
TTCTCTGCCCCTGGTCTTCACTCCTCGGATGCCAGTCTGA

Synonyms

Publications