jgi.p|Nanoce1779_2|608039, mRNA_9081 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608039
Unique NamemRNA_9081
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1246
Alignment locationscaffold_40:78433..79678 -

Link to JBrowse

Properties
Property NameValue
TranscriptId608125
TrackFilteredModels2
ProteinId608039
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:78433..79678 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608039gene_9081Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608039mRNA_9081-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9081CDS_9081Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9081 ID=mRNA_9081|Name=jgi.p|Nanoce1779_2|608039|organism=Nannochloropsis oceanica|type=mRNA|length=1246bp
CAGTCAAACAGCCACAGCAGCAGCACCATGCCTTCTTCACTATCAGAGCC
TGCGAAATCAGGACCCGTGCACGCAGCAGCAGAACTAAGTTCCACCAATC
CTACACTAACACAAGTAACATCAGTAACATCAGTACAAGCAGCCTCGACC
CCTACCCAAGCCCGCAGCCTCCTCCTCAGCCCCAGGCAAAGGGCCCTCCT
CGAGGCAAGCAACGAGCCAGACCTGGACACCTTTTCTCTATCATTATTGT
CACACAAGATAAGAAGCGACAGCTGCAGCGTGCACTTGGACCTCGCCACC
ATCCTTGCTAGCGAAAAAGTGTACAAGGATGTAGTCGCCACCGCCTACCC
TTGCAGTGTCGGTAAGGCCCTGAGTCAAGAAGACCGCGATGAGAGCATTC
GCGCGACCGAGGGGAGTCTAACATACGGGGAAATACCTTTTCGCTCCATG
GCTTTCATACTTGAAAAGATCCGGCAAGATTACGGGAGGCCCCGCGCAGC
AGCAGGCAAGCGCGAGGGTGCTGATCAGGGGGAGGAGGAGGAGGAGATGG
AGGAAGAGGAGATGGAAGAGGACGAAAATAAGGAAAGGAGGGATGAGATT
ATCCACAGCGTAATGCAGGAGCCAGGTAAGGATGTGCTCTATGACATTGG
GTCCGGCACAGGGAAACCTTGCTTTGCAGCTGCTGCTCTGTTCCCTTTCC
GCAAGGTGGTGGGGATCGAGCTCCTGGACAAATTGCATGAAGCAGCTATG
AAAATACGGAAGAAGTGGGAGATGGAAGCAGTTTCGGCATTGGTGGAGGC
TCGGAAAGGAGGGGAGGGAGGAGAGGCAAGCATAATGACGACAACGCAGC
TAGAATTCTTACACGGAGATTTCAGAGATGTGAGTCTGTGTGATTGGCCG
TCGGAAGCCGATATTTGTGTGGCAAACAGCACCTGTTTTTCTCCTTTACT
GATGAGGGACCTGGCGGAGTTGGCGGCAGGGATGAAGGAAGGGAGTGTGT
TTGTGACATTGACCCGGAGGCTGCCCTCAGAGGAGCACTGGGAAGTGGTG
GATGACACCCTGATGGTCATGTCGTGGGGGGGGGCTACTGTGTACACGCA
GAGGAAGAAGACCCCGCCTGCTTTCGTCAACCGTTTTGCTGGTGTAAAGG
CGACAGAGCTATCGAGAGGGCGAAGAAGAACAACTCAAAAAAGCGAATAA
GAACGTAGGGATGGATGCGCAAAGAAACATAAAGAGATAAGACTGG
back to top

protein sequence of jgi.p|Nanoce1779_2|608039

>mRNA_9081-protein ID=mRNA_9081-protein|Name=jgi.p|Nanoce1779_2|608039|organism=Nannochloropsis oceanica|type=polypeptide|length=391bp
MPSSLSEPAKSGPVHAAAELSSTNPTLTQVTSVTSVQAASTPTQARSLLL
SPRQRALLEASNEPDLDTFSLSLLSHKIRSDSCSVHLDLATILASEKVYK
DVVATAYPCSVGKALSQEDRDESIRATEGSLTYGEIPFRSMAFILEKIRQ
DYGRPRAAAGKREGADQGEEEEEMEEEEMEEDENKERRDEIIHSVMQEPG
KDVLYDIGSGTGKPCFAAAALFPFRKVVGIELLDKLHEAAMKIRKKWEME
AVSALVEARKGGEGGEASIMTTTQLEFLHGDFRDVSLCDWPSEADICVAN
STCFSPLLMRDLAELAAGMKEGSVFVTLTRRLPSEEHWEVVDDTLMVMSW
GGATVYTQRKKTPPAFVNRFAGVKATELSRGRRRTTQKSE*
back to top

mRNA from alignment at scaffold_40:78433..79678-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9081 ID=mRNA_9081|Name=jgi.p|Nanoce1779_2|608039|organism=Nannochloropsis oceanica|type=mRNA|length=1246bp|location=Sequence derived from alignment at scaffold_40:78433..79678- (Nannochloropsis oceanica)
CAGTCAAACAGCCACAGCAGCAGCACCATGCCTTCTTCACTATCAGAGCC
TGCGAAATCAGGACCCGTGCACGCAGCAGCAGAACTAAGTTCCACCAATC
CTACACTAACACAAGTAACATCAGTAACATCAGTACAAGCAGCCTCGACC
CCTACCCAAGCCCGCAGCCTCCTCCTCAGCCCCAGGCAAAGGGCCCTCCT
CGAGGCAAGCAACGAGCCAGACCTGGACACCTTTTCTCTATCATTATTGT
CACACAAGATAAGAAGCGACAGCTGCAGCGTGCACTTGGACCTCGCCACC
ATCCTTGCTAGCGAAAAAGTGTACAAGGATGTAGTCGCCACCGCCTACCC
TTGCAGTGTCGGTAAGGCCCTGAGTCAAGAAGACCGCGATGAGAGCATTC
GCGCGACCGAGGGGAGTCTAACATACGGGGAAATACCTTTTCGCTCCATG
GCTTTCATACTTGAAAAGATCCGGCAAGATTACGGGAGGCCCCGCGCAGC
AGCAGGCAAGCGCGAGGGTGCTGATCAGGGGGAGGAGGAGGAGGAGATGG
AGGAAGAGGAGATGGAAGAGGACGAAAATAAGGAAAGGAGGGATGAGATT
ATCCACAGCGTAATGCAGGAGCCAGGTAAGGATGTGCTCTATGACATTGG
GTCCGGCACAGGGAAACCTTGCTTTGCAGCTGCTGCTCTGTTCCCTTTCC
GCAAGGTGGTGGGGATCGAGCTCCTGGACAAATTGCATGAAGCAGCTATG
AAAATACGGAAGAAGTGGGAGATGGAAGCAGTTTCGGCATTGGTGGAGGC
TCGGAAAGGAGGGGAGGGAGGAGAGGCAAGCATAATGACGACAACGCAGC
TAGAATTCTTACACGGAGATTTCAGAGATGTGAGTCTGTGTGATTGGCCG
TCGGAAGCCGATATTTGTGTGGCAAACAGCACCTGTTTTTCTCCTTTACT
GATGAGGGACCTGGCGGAGTTGGCGGCAGGGATGAAGGAAGGGAGTGTGT
TTGTGACATTGACCCGGAGGCTGCCCTCAGAGGAGCACTGGGAAGTGGTG
GATGACACCCTGATGGTCATGTCGTGGGGGGGGGCTACTGTGTACACGCA
GAGGAAGAAGACCCCGCCTGCTTTCGTCAACCGTTTTGCTGGTGTAAAGG
CGACAGAGCTATCGAGAGGGCGAAGAAGAACAACTCAAAAAAGCGAATAA
GAACGTAGGGATGGATGCGCAAAGAAACATAAAGAGATAAGACTGG
back to top

Coding sequence (CDS) from alignment at scaffold_40:78433..79678-

>mRNA_9081 ID=mRNA_9081|Name=jgi.p|Nanoce1779_2|608039|organism=Nannochloropsis oceanica|type=CDS|length=1173bp|location=Sequence derived from alignment at scaffold_40:78433..79678- (Nannochloropsis oceanica)
ATGCCTTCTTCACTATCAGAGCCTGCGAAATCAGGACCCGTGCACGCAGC
AGCAGAACTAAGTTCCACCAATCCTACACTAACACAAGTAACATCAGTAA
CATCAGTACAAGCAGCCTCGACCCCTACCCAAGCCCGCAGCCTCCTCCTC
AGCCCCAGGCAAAGGGCCCTCCTCGAGGCAAGCAACGAGCCAGACCTGGA
CACCTTTTCTCTATCATTATTGTCACACAAGATAAGAAGCGACAGCTGCA
GCGTGCACTTGGACCTCGCCACCATCCTTGCTAGCGAAAAAGTGTACAAG
GATGTAGTCGCCACCGCCTACCCTTGCAGTGTCGGTAAGGCCCTGAGTCA
AGAAGACCGCGATGAGAGCATTCGCGCGACCGAGGGGAGTCTAACATACG
GGGAAATACCTTTTCGCTCCATGGCTTTCATACTTGAAAAGATCCGGCAA
GATTACGGGAGGCCCCGCGCAGCAGCAGGCAAGCGCGAGGGTGCTGATCA
GGGGGAGGAGGAGGAGGAGATGGAGGAAGAGGAGATGGAAGAGGACGAAA
ATAAGGAAAGGAGGGATGAGATTATCCACAGCGTAATGCAGGAGCCAGGT
AAGGATGTGCTCTATGACATTGGGTCCGGCACAGGGAAACCTTGCTTTGC
AGCTGCTGCTCTGTTCCCTTTCCGCAAGGTGGTGGGGATCGAGCTCCTGG
ACAAATTGCATGAAGCAGCTATGAAAATACGGAAGAAGTGGGAGATGGAA
GCAGTTTCGGCATTGGTGGAGGCTCGGAAAGGAGGGGAGGGAGGAGAGGC
AAGCATAATGACGACAACGCAGCTAGAATTCTTACACGGAGATTTCAGAG
ATGTGAGTCTGTGTGATTGGCCGTCGGAAGCCGATATTTGTGTGGCAAAC
AGCACCTGTTTTTCTCCTTTACTGATGAGGGACCTGGCGGAGTTGGCGGC
AGGGATGAAGGAAGGGAGTGTGTTTGTGACATTGACCCGGAGGCTGCCCT
CAGAGGAGCACTGGGAAGTGGTGGATGACACCCTGATGGTCATGTCGTGG
GGGGGGGCTACTGTGTACACGCAGAGGAAGAAGACCCCGCCTGCTTTCGT
CAACCGTTTTGCTGGTGTAAAGGCGACAGAGCTATCGAGAGGGCGAAGAA
GAACAACTCAAAAAAGCGAATAA
back to top
Synonyms
Publications