jgi.p|Nanoce1779_2|608037, mRNA_9080 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608037
Unique Name	mRNA_9080
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1669
Alignment location	scaffold_40:76745..78413 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	608123
Track	FilteredModels2
ProteinId	608037

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:76745..78413 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608037	gene_9080	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608037	mRNA_9080-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9080	CDS_9080	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:76745..78413+
coding sequence from alignment at scaffold_40:76745..78413+

mRNA sequence

>mRNA_9080 ID=mRNA_9080|Name=jgi.p|Nanoce1779_2|608037|organism=Nannochloropsis oceanica|type=mRNA|length=1669bp
CCCTCTTTCACCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACG
GTACAGGAAAAAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCC
CGCGATGGGCAGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGC
CAGCAGCAGCAGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCT
CACGGGCTCACCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAA
CTCGCTCGCTGGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCA
ATTTCAAGTTCCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTC
TCGACAGCCTGGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTG
CCCTTGGCTTCCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGG
GATAGAAATAGATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTT
CCTCCCTCCCGCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGG
GACTTGTTCAAGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGC
AGGGAGCGAAGCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGG
GAGGGGTGGCGACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCG
AGGTATGAGACGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGG
GAGACATGGGAGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACG
AGGAAGAGGAGGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGA
CAAGAAGGATGGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCG
AGGGGAGGGATTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGG
TCGCGGAGATAGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTG
GTTCATTTTGGCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGA
GGCGCCCTTGTTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACG
GGACGACGGTCAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCA
GAGGCGGCGAGAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGC
GCGGTATTATCAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAG
CAGCACCTGTTGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTG
GTACAGCCGGAGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGT
GAAGGTTAAGAAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGG
TGCAATTGGTTCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTG
ATGAAGTTGATGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTT
GAAGTGAAGGGAGGTGGAGGGAAGGAGGGGAGGAAGACTAGCGGACCGGG
TTGCAAATGAGGAGATTTTTCTAAGTAGCTTATGACATGGAAGAGAGAGA
GGATGATGGGGATAAGGCGACAAAATCAAGAATTTAGAGAGGACAAACAA
ATAATTGCATTTTCGCTCA

protein sequence of jgi.p|Nanoce1779_2|608037

>mRNA_9080-protein ID=mRNA_9080-protein|Name=jgi.p|Nanoce1779_2|608037|organism=Nannochloropsis oceanica|type=polypeptide|length=404bp
MQFQVPLPEVPLGPRFLTLDSLANLGDLISYKDSVPLASQFKYALHSDIS
LGIEIDTIDRKKWQPPPASSLPPSLHPDDMALLEWDLFKGKQKRAGEDGE
EAGSEAGREAGGEREEDTGGVATAGQVAAPWMLRPRYETTVTYDCQEERE
GGRHGRRKNPPKAEGGEDEEEEEEQGGAEVFDESRQEGWEAAIARTFDEA
RRGEGLAPREEGGKGPLWVAEIVPDLEQWANELVVVHFGNELRGREEEAA
MEAPLFVLEGGREEGLVHGTTVKAGYMRGRGHVTAEAARVGGGVVSKAFE
PARYYQLEVTRTDGGGGEAAPVEGDQQQQQYLLLLVQPETGVVSMCPTVA
NVKVKKVDRAASGKPARGVQLVHRPLGEEEAMGRVMKLMKAGLEEEEAVE
YLK*

mRNA from alignment at scaffold_40:76745..78413+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9080 ID=mRNA_9080|Name=jgi.p|Nanoce1779_2|608037|organism=Nannochloropsis oceanica|type=mRNA|length=1669bp|location=Sequence derived from alignment at scaffold_40:76745..78413+ (Nannochloropsis oceanica)
CCCTCTTTCACCTTCCTCCCACAGTAAGCCTTCTTTGTCCTCTATCAACG
GTACAGGAAAAAGCAGCAGCAGCAGCAGCAGCAGTGGCAGCAAGCGTCCC
CGCGATGGGCAGCATGGTCAGCAACCCCCCCGTCACCTCAGCGCCACAGC
CAGCAGCAGCAGCAAAACCGTGGAACCCCACGCCTACAAAGACAAGCGCT
CACGGGCTCACCCTCCATCATCCTCCGCTCCCAAACACCCACCCGTCCAA
CTCGCTCGCTGGCGGGACGCTTTACGGAGCGACTTTATTGTCGACATGCA
ATTTCAAGTTCCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCTCACTC
TCGACAGCCTGGCGAACCTCGGCGATTTAATCTCTTACAAAGACTCGGTG
CCCTTGGCTTCCCAGTTCAAATATGCCTTGCACTCGGACATCTCCCTTGG
GATAGAAATAGATACAATCGACAGGAAGAAGTGGCAGCCACCCCCCGCTT
CCTCCCTCCCGCCTTCGCTTCACCCCGATGACATGGCATTGCTAGAATGG
GACTTGTTCAAGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAGGAGGC
AGGGAGCGAAGCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGATACGG
GAGGGGTGGCGACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGAGGCCG
AGGTATGAGACGACGGTGACTTACGATTGTCAGGAGGAAAGGGAGGGAGG
GAGACATGGGAGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGAGGACG
AGGAAGAGGAGGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGAGTCGA
CAAGAAGGATGGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCAAGGCG
AGGGGAGGGATTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCTGTGGG
TCGCGGAGATAGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGGTGGTG
GTTCATTTTGGCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCCATGGA
GGCGCCCTTGTTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGTGCACG
GGACGACGGTCAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGACGGCA
GAGGCGGCGAGAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAACCTGC
GCGGTATTATCAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGGAGAAG
CAGCACCTGTTGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTATTATTG
GTACAGCCGGAGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCGAACGT
GAAGGTTAAGAAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAGAGGGG
TGCAATTGGTTCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAAGGGTG
ATGAAGTTGATGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAATACTT
GAAGTGAAGGGAGGTGGAGGGAAGGAGGGGAGGAAGACTAGCGGACCGGG
TTGCAAATGAGGAGATTTTTCTAAGTAGCTTATGACATGGAAGAGAGAGA
GGATGATGGGGATAAGGCGACAAAATCAAGAATTTAGAGAGGACAAACAA
ATAATTGCATTTTCGCTCA

Coding sequence (CDS) from alignment at scaffold_40:76745..78413+

>mRNA_9080 ID=mRNA_9080|Name=jgi.p|Nanoce1779_2|608037|organism=Nannochloropsis oceanica|type=CDS|length=1212bp|location=Sequence derived from alignment at scaffold_40:76745..78413+ (Nannochloropsis oceanica)
ATGCAATTTCAAGTTCCCCTCCCCGAGGTTCCCCTCGGGCCCCGCTTCCT
CACTCTCGACAGCCTGGCGAACCTCGGCGATTTAATCTCTTACAAAGACT
CGGTGCCCTTGGCTTCCCAGTTCAAATATGCCTTGCACTCGGACATCTCC
CTTGGGATAGAAATAGATACAATCGACAGGAAGAAGTGGCAGCCACCCCC
CGCTTCCTCCCTCCCGCCTTCGCTTCACCCCGATGACATGGCATTGCTAG
AATGGGACTTGTTCAAGGGCAAGCAGAAGAGGGCGGGAGAGGATGGGGAG
GAGGCAGGGAGCGAAGCAGGAAGGGAGGCAGGGGGGGAGAGAGAGGAGGA
TACGGGAGGGGTGGCGACTGCAGGGCAGGTGGCAGCGCCGTGGATGTTGA
GGCCGAGGTATGAGACGACGGTGACTTACGATTGTCAGGAGGAAAGGGAG
GGAGGGAGACATGGGAGAAGGAAGAACCCTCCGAAAGCAGAGGGGGGGGA
GGACGAGGAAGAGGAGGAGGAGCAAGGGGGAGCGGAGGTATTCGATGAGA
GTCGACAAGAAGGATGGGAGGCTGCGATCGCGCGTACTTTTGATGAGGCA
AGGCGAGGGGAGGGATTGGCGCCACGGGAGGAGGGAGGAAAGGGTCCGCT
GTGGGTCGCGGAGATAGTCCCTGATCTCGAGCAGTGGGCGAATGAGCTGG
TGGTGGTTCATTTTGGCAACGAGTTGAGAGGGAGGGAGGAGGAGGCGGCC
ATGGAGGCGCCCTTGTTCGTTTTGGAAGGAGGAAGGGAGGAAGGGTTAGT
GCACGGGACGACGGTCAAGGCGGGCTACATGCGCGGCAGGGGGCATGTGA
CGGCAGAGGCGGCGAGAGTTGGAGGGGGGGTGGTGAGCAAGGCCTTTGAA
CCTGCGCGGTATTATCAGTTGGAGGTCACTAGGACAGACGGAGGAGGAGG
AGAAGCAGCACCTGTTGAGGGTGATCAGCAGCAGCAGCAGTATCTGTTAT
TATTGGTACAGCCGGAGACGGGTGTGGTGTCTATGTGTCCGACTGTGGCG
AACGTGAAGGTTAAGAAAGTGGATAGGGCAGCGTCAGGGAAGCCGGCGAG
AGGGGTGCAATTGGTTCATCGGCCGCTGGGGGAGGAAGAGGCGATGGGAA
GGGTGATGAAGTTGATGAAGGCGGGGTTGGAAGAGGAGGAGGCGGTCGAA
TACTTGAAGTGA

Synonyms

Publications