jgi.p|Nanoce1779_2|608036, mRNA_9079 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608036
Unique NamemRNA_9079
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length834
Alignment locationscaffold_40:74943..76038 -

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Properties
Property NameValue
TranscriptId608122
TrackFilteredModels2
ProteinId608036
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:74943..76038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608036gene_9079Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608036mRNA_9079-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9079CDS_9079Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9079 ID=mRNA_9079|Name=jgi.p|Nanoce1779_2|608036|organism=Nannochloropsis oceanica|type=mRNA|length=834bp
ACAGGAAGCTTCGGGAGGGAAGGATAAAATGTGCCGTCGCGTACTCGACT
TTCTTCTCTTGGTGCTCGTGGTATTCAGTAGCACCACATATGCCTTTTTC
CCCTCGGCAGCACTATCCTTCACAACCGCACGCACCCGCTGCTGCGCGAC
AGCCTCAACGTCATCGTCGTCCACATTATCAAAGCATCTCGACCGTCAGA
CTGCCTTGCGTTCCTTGTTTGGAGGTATAGCGCTCCCTGCTCTTGTCGTG
TTGTCCCCAAGCATTGGTAGTGGCGTGCCTTCTGTCCTTGCCCAAGACTC
GTCTCCTGCCGAGGAGGCTTTGACCCGCGTGATTATTGTAAAGGACTCGA
CAGAGCAATTGGAAGATGAGCTCACGAACGGCAACAGCTACCCCGACGTT
AAGGCCCTAGTCACCTCCCTCCTCCGGAACTATCAGCTCAAGTCCAGCCT
GGATAGCGCCCTGGCCCTTCTTCCCTCCTCCATTTCTCCCAAGACAAAAG
AAGACGCGAAACTGCACGCGAAAACCGCCTATGAAAATTTGATTCTTATT
TTAGAATATTTTCCCGAAGATCAAAGTGGGCCCTTGGCGAACAAGACGCT
CAAGCCTGAGCAGGTTACCTTCACCATAAAGGCGTTGCAGGCGACTAGGA
AAGAATTGCGTGATTACATGGGATTCTTTGACGAGGGTCTGAGGGAAAAG
CTGGCGGAGGGGGTGGCGAGCACGTAGGGAGGGAGGCAGACAGGCAGACA
GGCAGGGAGGGAAGGAGGGGAATTTATAGAACCTGGAATAAAAGACTGTT
AGTTTTATTACTATTTCATTGTCTTCTTTCCTTT
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protein sequence of jgi.p|Nanoce1779_2|608036

>mRNA_9079-protein ID=mRNA_9079-protein|Name=jgi.p|Nanoce1779_2|608036|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MCRRVLDFLLLVLVVFSSTTYAFFPSAALSFTTARTRCCATASTSSSSTL
SKHLDRQTALRSLFGGIALPALVVLSPSIGSGVPSVLAQDSSPAEEALTR
VIIVKDSTEQLEDELTNGNSYPDVKALVTSLLRNYQLKSSLDSALALLPS
SISPKTKEDAKLHAKTAYENLILILEYFPEDQSGPLANKTLKPEQVTFTI
KALQATRKELRDYMGFFDEGLREKLAEGVAST*
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mRNA from alignment at scaffold_40:74943..76038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9079 ID=mRNA_9079|Name=jgi.p|Nanoce1779_2|608036|organism=Nannochloropsis oceanica|type=mRNA|length=1096bp|location=Sequence derived from alignment at scaffold_40:74943..76038- (Nannochloropsis oceanica)
ACAGGAAGCTTCGGGAGGGAAGGATAAAATGTGCCGTCGCGTACTCGACT
TTCTTCTCTTGGTGCTCGTGGTATTCAGTAGCACCACATATGCCTTTTTC
CCCTCGGCAGCACTATCCTTCACAACCGCACGCACCCGCTGCTGCGCGAC
AGCCTCAACGTCATCGTCGTCCACATTATCAAAGCATCTCGACCGTCAGA
CTGCCTTGCGTTCCTTGTTTGGAGGTATAGCGCTCCCTGCTCTTGTCGTG
TTGTCCCCAAGCATTGGTAGTGGCGTGCCTTCTGTCCTTGCCCAAGACTC
GTCTCCTGCCGAGGAGGCTTTGACCCGCGTGATTATTGTAAAGGACTCGA
CAGAGCAATTGGTACGGACATCTTGATTATCTTATGCTTGCATATTATTG
TAAAAGTGAGCCATGTATTTTCTTCTCTTCCTTTACTTCCGCCCCCCGCC
TTTGCTTGGGCCTCTTTGCTTGCCCTCTCCAACGTGACCCACACGCCAAA
ATGAAGCCAAGCCTGTCTTAACAACGCGCAGATGCAAGCCGTTCAATCTC
AGTCTCATGGTCTTCAATCTCAACTTCCCTCCCTTCCTCTTCCACGCCGC
CACTCACCATTCCCCGCCCACAGGAAGATGAGCTCACGAACGGCAACAGC
TACCCCGACGTTAAGGCCCTAGTCACCTCCCTCCTCCGGAACTATCAGCT
CAAGTCCAGCCTGGATAGCGCCCTGGCCCTTCTTCCCTCCTCCATTTCTC
CCAAGACAAAAGAAGACGCGAAACTGCACGCGAAAACCGCCTATGAAAAT
TTGATTCTTATTTTAGAATATTTTCCCGAAGATCAAAGTGGGCCCTTGGC
GAACAAGACGCTCAAGCCTGAGCAGGTTACCTTCACCATAAAGGCGTTGC
AGGCGACTAGGAAAGAATTGCGTGATTACATGGGATTCTTTGACGAGGGT
CTGAGGGAAAAGCTGGCGGAGGGGGTGGCGAGCACGTAGGGAGGGAGGCA
GACAGGCAGACAGGCAGGGAGGGAAGGAGGGGAATTTATAGAACCTGGAA
TAAAAGACTGTTAGTTTTATTACTATTTCATTGTCTTCTTTCCTTT
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Coding sequence (CDS) from alignment at scaffold_40:74943..76038-

>mRNA_9079 ID=mRNA_9079|Name=jgi.p|Nanoce1779_2|608036|organism=Nannochloropsis oceanica|type=CDS|length=1398bp|location=Sequence derived from alignment at scaffold_40:74943..76038- (Nannochloropsis oceanica)
GAAGATGAGCTCACGAACGGCAACAGCTACCCCGACGTTAAGGCCCTAGT
CACCTCCCTCCTCCGGAACTATCAGCTCAAGTCCAGCCTGGATAGCGCCC
TGGCCCTTCTTCCCTCCTCCATTTCTCCCAAGACAAAAGAAGACGCGAAA
CTGCACGCGAAAACCGCCTATGAAAATTTGATTCTTATTTTAGAATATTT
TCCCGAAGATCAAAGTGGGCCCTTGGCGAACAAGACGCTCAAGCCTGAGC
AGGTTACCTTCACCATAAAGGCGTTGCAGGCGACTAGGAAAGAATTGCGT
GATTACATGGGATTCTTTGACGAGGGTCTGAGGGAAAAGCTGGCGGAGGG
GGTGGCGAGCACGTAGATGTGCCGTCGCGTACTCGACTTTCTTCTCTTGG
TGCTCGTGGTATTCAGTAGCACCACATATGCCTTTTTCCCCTCGGCAGCA
CTATCCTTCACAACCGCACGCACCCGCTGCTGCGCGACAGCCTCAACGTC
ATCGTCGTCCACATTATCAAAGCATCTCGACCGTCAGACTGCCTTGCGTT
CCTTGTTTGGAGGTATAGCGCTCCCTGCTCTTGTCGTGTTGTCCCCAAGC
ATTGGTAGTGGCGTGCCTTCTGTCCTTGCCCAAGACTCGTCTCCTGCCGA
GGAGGCTTTGACCCGCGTGATTATTGTAAAGGACTCGACAGAGCAATTGG
AAGATGAGCTCACGAACGGCAACAGCTACCCCGACGTTAAGGCCCTAGTC
ACCTCCCTCCTCCGGAACTATCAGCTCAAGTCCAGCCTGGATAGCGCCCT
GGCCCTTCTTCCCTCCTCCATTTCTCCCAAGACAAAAGAAGACGCGAAAC
TGCACGCGAAAACCGCCTATGAAAATTTGATTCTTATTTTAGAATATTTT
CCCGAAGATCAAAGTGGGCCCTTGGCGAACAAGACGCTCAAGCCTGAGCA
GGTTACCTTCACCATAAAGGCGTTGCAGGCGACTAGGAAAGAATTGCGTG
ATTACATGGGATTCTTTGACGAGGGTCTGAGGGAAAAGCTGGCGGAGGGG
GTGGCGAGCACGTAGATGTGCCGTCGCGTACTCGACTTTCTTCTCTTGGT
GCTCGTGGTATTCAGTAGCACCACATATGCCTTTTTCCCCTCGGCAGCAC
TATCCTTCACAACCGCACGCACCCGCTGCTGCGCGACAGCCTCAACGTCA
TCGTCGTCCACATTATCAAAGCATCTCGACCGTCAGACTGCCTTGCGTTC
CTTGTTTGGAGGTATAGCGCTCCCTGCTCTTGTCGTGTTGTCCCCAAGCA
TTGGTAGTGGCGTGCCTTCTGTCCTTGCCCAAGACTCGTCTCCTGCCGAG
GAGGCTTTGACCCGCGTGATTATTGTAAAGGACTCGACAGAGCAATTG
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Synonyms
Publications