jgi.p|Nanoce1779_2|608026, mRNA_9077 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608026
Unique NamemRNA_9077
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1323
Alignment locationscaffold_40:67803..69125 -

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Properties
Property NameValue
TranscriptId608112
TrackFilteredModels2
ProteinId608026
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:67803..69125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608026gene_9077Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608026mRNA_9077-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9077CDS_9077Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9077 ID=mRNA_9077|Name=jgi.p|Nanoce1779_2|608026|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp
CAGGTCTCCTCCTCTCGTGTAAATATGCCCAGCCCTTCGTGGGTCTCCTT
CTTTTCTTTTCTCATTGGCTTCTTCGTTGTCTGCAGCCTCCTTGTCCTTC
CACGCGTCGGCCATGCCTTCCTCCTGGCCACTCCTCCGTCCACGACCAGC
ACCATTAGCATCTCTACGAAGCTCAGCAACGCGTTGCACGCACGAGTCGG
CGGTGGGTTTGGATTTGGCAAGCGCGTGAACGGCGCGGGGGCGGAAGACG
AACCCACCACAAGCAAGTTCTTCGACGAGACCATTTTCTCCCCGTACTCC
AAACGCCGCCCCGTCCCTCCCTATGACAGCACCCCTTGCGCCTGCGGCTC
CGGTGAATCTTACGCCAACTGCTGCTTTCCCTTGCATAAAGGCTTGGTCA
AGGCCCAGACACCCGAGGCACTGCTTCGGTCACGATACACAGCCTACCTG
CACGGCTTCCCCAAGTATCTCCTCTCGTCCACTCACCCCTCCTCGGAGCC
CATGCGGCCCAAGCGTGAAAAAGCATATTTACAACTCTTGAACATTGCAT
GCAGTGAAGAAAATCTGAAACAGTTGCAGGTGGGAGTGCAGGAGGCGGGG
GGGACGGAAGGAGAGGCTTTCATCACCTTCAGAGTGAAGCGGCATGTGTG
GATGAGTGAACGGAGCAAGTTTTTGAAGGGCGAAGACGGGGGATGGTTGT
TTTTGGACGAGCAGGTTTAAAGTGAGGGGGCGAATATGAATGGTGAGTCT
TTGGGGTTTCTTTATGAAAGGAGACGGGTCGAAAAGAGCGAAACAGGTAG
ACCCAGCTGAAACCGTGGAATTGATCTACTACCTACCGACCTACAGCCCG
CAGGCAGGCAGGGTTAGGATCAAAGTCGGAGCAAAGTCAGATCACCGATG
ACGAGAGTTGCTGTAATTGGTACACATTCTCACATAAATGTGGAAGTGGT
CGAGGGAGTGAGGAAAGCGATCGAAGCCTTTACCACCCCAATCGTTAGGC
TCCTTGTCCGTTGCCGACACCACGCCGTGCAACTCGTTGATTCAGACGAT
ACAATGGCTTCTCTTTCCCACTCCGCTTAAGACGGTCTCCTCACGACTGA
TTCACCACATGGACTCCTCACTTGCCTTTCTCTCAATAAGTCAGATATAC
AAGCGCAGATGATGGACGCGGTGCGAGGGATGTAAAACCTCATCCTTTTA
CCCATTTTACTCTTTAAAGCTCGTCTTGAAAGTCATCGAAAGAGAATAAA
GTATCCTCAAGTACGTAGCGACAAGAAAGCGCAGGACGCATGCAAAAATC
AAGATACTGGTCACCGGGGGAAG
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protein sequence of jgi.p|Nanoce1779_2|608026

>mRNA_9077-protein ID=mRNA_9077-protein|Name=jgi.p|Nanoce1779_2|608026|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MPSPSWVSFFSFLIGFFVVCSLLVLPRVGHAFLLATPPSTTSTISISTKL
SNALHARVGGGFGFGKRVNGAGAEDEPTTSKFFDETIFSPYSKRRPVPPY
DSTPCACGSGESYANCCFPLHKGLVKAQTPEALLRSRYTAYLHGFPKYLL
SSTHPSSEPMRPKREKAYLQLLNIACSEENLKQLQVGVQEAGGTEGEAFI
TFRVKRHVWMSERSKFLKGEDGGWLFLDEQV*
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mRNA from alignment at scaffold_40:67803..69125-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9077 ID=mRNA_9077|Name=jgi.p|Nanoce1779_2|608026|organism=Nannochloropsis oceanica|type=mRNA|length=1323bp|location=Sequence derived from alignment at scaffold_40:67803..69125- (Nannochloropsis oceanica)
CAGGTCTCCTCCTCTCGTGTAAATATGCCCAGCCCTTCGTGGGTCTCCTT
CTTTTCTTTTCTCATTGGCTTCTTCGTTGTCTGCAGCCTCCTTGTCCTTC
CACGCGTCGGCCATGCCTTCCTCCTGGCCACTCCTCCGTCCACGACCAGC
ACCATTAGCATCTCTACGAAGCTCAGCAACGCGTTGCACGCACGAGTCGG
CGGTGGGTTTGGATTTGGCAAGCGCGTGAACGGCGCGGGGGCGGAAGACG
AACCCACCACAAGCAAGTTCTTCGACGAGACCATTTTCTCCCCGTACTCC
AAACGCCGCCCCGTCCCTCCCTATGACAGCACCCCTTGCGCCTGCGGCTC
CGGTGAATCTTACGCCAACTGCTGCTTTCCCTTGCATAAAGGCTTGGTCA
AGGCCCAGACACCCGAGGCACTGCTTCGGTCACGATACACAGCCTACCTG
CACGGCTTCCCCAAGTATCTCCTCTCGTCCACTCACCCCTCCTCGGAGCC
CATGCGGCCCAAGCGTGAAAAAGCATATTTACAACTCTTGAACATTGCAT
GCAGTGAAGAAAATCTGAAACAGTTGCAGGTGGGAGTGCAGGAGGCGGGG
GGGACGGAAGGAGAGGCTTTCATCACCTTCAGAGTGAAGCGGCATGTGTG
GATGAGTGAACGGAGCAAGTTTTTGAAGGGCGAAGACGGGGGATGGTTGT
TTTTGGACGAGCAGGTTTAAAGTGAGGGGGCGAATATGAATGGTGAGTCT
TTGGGGTTTCTTTATGAAAGGAGACGGGTCGAAAAGAGCGAAACAGGTAG
ACCCAGCTGAAACCGTGGAATTGATCTACTACCTACCGACCTACAGCCCG
CAGGCAGGCAGGGTTAGGATCAAAGTCGGAGCAAAGTCAGATCACCGATG
ACGAGAGTTGCTGTAATTGGTACACATTCTCACATAAATGTGGAAGTGGT
CGAGGGAGTGAGGAAAGCGATCGAAGCCTTTACCACCCCAATCGTTAGGC
TCCTTGTCCGTTGCCGACACCACGCCGTGCAACTCGTTGATTCAGACGAT
ACAATGGCTTCTCTTTCCCACTCCGCTTAAGACGGTCTCCTCACGACTGA
TTCACCACATGGACTCCTCACTTGCCTTTCTCTCAATAAGTCAGATATAC
AAGCGCAGATGATGGACGCGGTGCGAGGGATGTAAAACCTCATCCTTTTA
CCCATTTTACTCTTTAAAGCTCGTCTTGAAAGTCATCGAAAGAGAATAAA
GTATCCTCAAGTACGTAGCGACAAGAAAGCGCAGGACGCATGCAAAAATC
AAGATACTGGTCACCGGGGGAAG
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Coding sequence (CDS) from alignment at scaffold_40:67803..69125-

>mRNA_9077 ID=mRNA_9077|Name=jgi.p|Nanoce1779_2|608026|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_40:67803..69125- (Nannochloropsis oceanica)
ATGCCCAGCCCTTCGTGGGTCTCCTTCTTTTCTTTTCTCATTGGCTTCTT
CGTTGTCTGCAGCCTCCTTGTCCTTCCACGCGTCGGCCATGCCTTCCTCC
TGGCCACTCCTCCGTCCACGACCAGCACCATTAGCATCTCTACGAAGCTC
AGCAACGCGTTGCACGCACGAGTCGGCGGTGGGTTTGGATTTGGCAAGCG
CGTGAACGGCGCGGGGGCGGAAGACGAACCCACCACAAGCAAGTTCTTCG
ACGAGACCATTTTCTCCCCGTACTCCAAACGCCGCCCCGTCCCTCCCTAT
GACAGCACCCCTTGCGCCTGCGGCTCCGGTGAATCTTACGCCAACTGCTG
CTTTCCCTTGCATAAAGGCTTGGTCAAGGCCCAGACACCCGAGGCACTGC
TTCGGTCACGATACACAGCCTACCTGCACGGCTTCCCCAAGTATCTCCTC
TCGTCCACTCACCCCTCCTCGGAGCCCATGCGGCCCAAGCGTGAAAAAGC
ATATTTACAACTCTTGAACATTGCATGCAGTGAAGAAAATCTGAAACAGT
TGCAGGTGGGAGTGCAGGAGGCGGGGGGGACGGAAGGAGAGGCTTTCATC
ACCTTCAGAGTGAAGCGGCATGTGTGGATGAGTGAACGGAGCAAGTTTTT
GAAGGGCGAAGACGGGGGATGGTTGTTTTTGGACGAGCAGGTTTAA
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Synonyms
Publications