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Properties
| Property Name | Value |
|---|
| TranscriptId | 608106 |
| Track | FilteredModels2 |
| ProteinId | 608020 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_40 | supercontig | scaffold_40:61391..63006 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9075 ID=mRNA_9075|Name=jgi.p|Nanoce1779_2|608020|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp
CAGGCAAGCAACAAAAGGGCCAACGGCAATAGGATAGCAGCAAGCCCACT
GGAGGCAATTTAGAGATGGTCTCTCCTCGGCAGCAGCAACCCACGGCACG
CAGCACCACTCGTCGGCCAACAGCAACTGTAACAACAACAACAGCAACAT
GCCTTCTTTTCTTAGGTATGTACCAAGCGGGCTGGCGAAGGGCGCCGCTG
AAGGTGGGAAGGATAGAAAGATTGACAGGTTGGTAGAAGGGGTAAAGTGG
TCTGGGGGAATATTGCGAGGAGAGGGCCTGGACGCACTCGGTCTCGTGCC
ACCCCTACCATGAAATACAAGCGTCGATGCTTCAGAAAGAGTAATGGATG
GCTGGAATCGGGAACCTCTTCCCTCAAAGCACACTGACAGGAGGAGGAGT
GTGCCATTTCCCCCCTAGGTCCGTCGTGCTCGGTAATGGCGTTCCCTCCC
TCCTCCTCCTGTATGCACGTCCTATTCAGCACCCACTCATCCACCCCTTC
CTCTTTTCATCTTTCAACCAGCAGTTGCAACGACCTCCCCTGTCGCTGAA
GCCTTCGTCCTTCCCGCATTTTCGTCCTCCACTTCCTCCACTTCCTCGCA
CAAAAGTCCAGCAGCCGTCCTTTCTTTTATGTCCATTCGTCCTTTCCCCC
GGGTTTCATCATCCCCAGTATCCATTCTTTGGAGCACAATAAGTATGGAA
GAAGGCAGTGAAGGAGGAGGAGGGGGAGGGGGATTCTCTGTGATAAATCA
AGTGATGCTTGTCGGGAACCTAGGCAGTGAGCCAGCAGTCAAGTATCTTG
ACAGTGGGAATTGTGTCTTATCGATCTCGCTGGCTGTGAATAAGGAGCTG
CCACCTACGGCTGTGAGAGGGGTTGAGGGTGGAGGAACAAATGAGGTGGA
TTGGATCAGAGTGGAAGCGTGGGGGAAGATAGCTGAGAACCTAGCAGCAG
GGGCGAGGAAAGGATCGAAGGTATGGGTGGTTGGTAAGCTGGTCACCAAT
AGCTGGGTGGATAAATACGGACAAAATAGGAGTGATTTAAAGGTACGAGT
TAAGAGGGTGGAGGTACTTCAGACGGCCAGAACACAGATGCCAGCGCAGC
AGATGGGAGGGGGAGGTTACTATCAACAGCAGCAGCAGCAGCAGCAGCAG
TGGGACGGGCAGCAGGAGGATGAGCCGATGGTGATGGAGGGAAATATACG
AGGGGCGCAACAGCAGCTACTGCCGCAGCAGCAGCTGCTGCAGCAGTATG
GTAGGAACCAGGTCCCGGTGGCGGTACCTCCTGTGACTCCCCCTTACAGA
AATAAGTCGACATATGGCAATGACGGAGGAGGTGGTGGAGGAGAAAGAGA
AGGAAGGGAGCAGTATAATGTGGAATCGTACGATGTGGACACTGACATCC
CCTTTTAAAGCAATAGTTGAGACGGAAATGGTGAGAACGAAAAAGAAAAA
GAAGGGGAAGAAGAAAAAGAGGAAGGAGGAAAGAGATATCAACCAGCACC
TGTACGTAGCAACAAAAAAAATGTGACAAGCACCTCTGTTATTTGGGTAC
ATCCCTGTCAATCTTGCAGGAAGTAATAAAAGAAAAGAAATAAGATGAAA
AGCACCCGATTGGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|608020 >mRNA_9075-protein ID=mRNA_9075-protein|Name=jgi.p|Nanoce1779_2|608020|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MSIRPFPRVSSSPVSILWSTISMEEGSEGGGGGGGFSVINQVMLVGNLGS
EPAVKYLDSGNCVLSISLAVNKELPPTAVRGVEGGGTNEVDWIRVEAWGK
IAENLAAGARKGSKVWVVGKLVTNSWVDKYGQNRSDLKVRVKRVEVLQTA
RTQMPAQQMGGGGYYQQQQQQQQQWDGQQEDEPMVMEGNIRGAQQQLLPQ
QQLLQQYGRNQVPVAVPPVTPPYRNKSTYGNDGGGGGGEREGREQYNVES
YDVDTDIPF* back to topmRNA from alignment at scaffold_40:61391..63006- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9075 ID=mRNA_9075|Name=jgi.p|Nanoce1779_2|608020|organism=Nannochloropsis oceanica|type=mRNA|length=1616bp|location=Sequence derived from alignment at scaffold_40:61391..63006- (Nannochloropsis oceanica)
CAGGCAAGCAACAAAAGGGCCAACGGCAATAGGATAGCAGCAAGCCCACT
GGAGGCAATTTAGAGATGGTCTCTCCTCGGCAGCAGCAACCCACGGCACG
CAGCACCACTCGTCGGCCAACAGCAACTGTAACAACAACAACAGCAACAT
GCCTTCTTTTCTTAGGTATGTACCAAGCGGGCTGGCGAAGGGCGCCGCTG
AAGGTGGGAAGGATAGAAAGATTGACAGGTTGGTAGAAGGGGTAAAGTGG
TCTGGGGGAATATTGCGAGGAGAGGGCCTGGACGCACTCGGTCTCGTGCC
ACCCCTACCATGAAATACAAGCGTCGATGCTTCAGAAAGAGTAATGGATG
GCTGGAATCGGGAACCTCTTCCCTCAAAGCACACTGACAGGAGGAGGAGT
GTGCCATTTCCCCCCTAGGTCCGTCGTGCTCGGTAATGGCGTTCCCTCCC
TCCTCCTCCTGTATGCACGTCCTATTCAGCACCCACTCATCCACCCCTTC
CTCTTTTCATCTTTCAACCAGCAGTTGCAACGACCTCCCCTGTCGCTGAA
GCCTTCGTCCTTCCCGCATTTTCGTCCTCCACTTCCTCCACTTCCTCGCA
CAAAAGTCCAGCAGCCGTCCTTTCTTTTATGTCCATTCGTCCTTTCCCCC
GGGTTTCATCATCCCCAGTATCCATTCTTTGGAGCACAATAAGTATGGAA
GAAGGCAGTGAAGGAGGAGGAGGGGGAGGGGGATTCTCTGTGATAAATCA
AGTGATGCTTGTCGGGAACCTAGGCAGTGAGCCAGCAGTCAAGTATCTTG
ACAGTGGGAATTGTGTCTTATCGATCTCGCTGGCTGTGAATAAGGAGCTG
CCACCTACGGCTGTGAGAGGGGTTGAGGGTGGAGGAACAAATGAGGTGGA
TTGGATCAGAGTGGAAGCGTGGGGGAAGATAGCTGAGAACCTAGCAGCAG
GGGCGAGGAAAGGATCGAAGGTATGGGTGGTTGGTAAGCTGGTCACCAAT
AGCTGGGTGGATAAATACGGACAAAATAGGAGTGATTTAAAGGTACGAGT
TAAGAGGGTGGAGGTACTTCAGACGGCCAGAACACAGATGCCAGCGCAGC
AGATGGGAGGGGGAGGTTACTATCAACAGCAGCAGCAGCAGCAGCAGCAG
TGGGACGGGCAGCAGGAGGATGAGCCGATGGTGATGGAGGGAAATATACG
AGGGGCGCAACAGCAGCTACTGCCGCAGCAGCAGCTGCTGCAGCAGTATG
GTAGGAACCAGGTCCCGGTGGCGGTACCTCCTGTGACTCCCCCTTACAGA
AATAAGTCGACATATGGCAATGACGGAGGAGGTGGTGGAGGAGAAAGAGA
AGGAAGGGAGCAGTATAATGTGGAATCGTACGATGTGGACACTGACATCC
CCTTTTAAAGCAATAGTTGAGACGGAAATGGTGAGAACGAAAAAGAAAAA
GAAGGGGAAGAAGAAAAAGAGGAAGGAGGAAAGAGATATCAACCAGCACC
TGTACGTAGCAACAAAAAAAATGTGACAAGCACCTCTGTTATTTGGGTAC
ATCCCTGTCAATCTTGCAGGAAGTAATAAAAGAAAAGAAATAAGATGAAA
AGCACCCGATTGGTAA back to topCoding sequence (CDS) from alignment at scaffold_40:61391..63006- >mRNA_9075 ID=mRNA_9075|Name=jgi.p|Nanoce1779_2|608020|organism=Nannochloropsis oceanica|type=CDS|length=780bp|location=Sequence derived from alignment at scaffold_40:61391..63006- (Nannochloropsis oceanica)
ATGTCCATTCGTCCTTTCCCCCGGGTTTCATCATCCCCAGTATCCATTCT
TTGGAGCACAATAAGTATGGAAGAAGGCAGTGAAGGAGGAGGAGGGGGAG
GGGGATTCTCTGTGATAAATCAAGTGATGCTTGTCGGGAACCTAGGCAGT
GAGCCAGCAGTCAAGTATCTTGACAGTGGGAATTGTGTCTTATCGATCTC
GCTGGCTGTGAATAAGGAGCTGCCACCTACGGCTGTGAGAGGGGTTGAGG
GTGGAGGAACAAATGAGGTGGATTGGATCAGAGTGGAAGCGTGGGGGAAG
ATAGCTGAGAACCTAGCAGCAGGGGCGAGGAAAGGATCGAAGGTATGGGT
GGTTGGTAAGCTGGTCACCAATAGCTGGGTGGATAAATACGGACAAAATA
GGAGTGATTTAAAGGTACGAGTTAAGAGGGTGGAGGTACTTCAGACGGCC
AGAACACAGATGCCAGCGCAGCAGATGGGAGGGGGAGGTTACTATCAACA
GCAGCAGCAGCAGCAGCAGCAGTGGGACGGGCAGCAGGAGGATGAGCCGA
TGGTGATGGAGGGAAATATACGAGGGGCGCAACAGCAGCTACTGCCGCAG
CAGCAGCTGCTGCAGCAGTATGGTAGGAACCAGGTCCCGGTGGCGGTACC
TCCTGTGACTCCCCCTTACAGAAATAAGTCGACATATGGCAATGACGGAG
GAGGTGGTGGAGGAGAAAGAGAAGGAAGGGAGCAGTATAATGTGGAATCG
TACGATGTGGACACTGACATCCCCTTTTAA back to top
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