jgi.p|Nanoce1779_2|301891, mRNA_9072 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|301891
Unique NamemRNA_9072
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length783
Alignment locationscaffold_40:57476..58748 +

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Properties
Property NameValue
TranscriptId301977
TrackFilteredModels2
ProteinId301891
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:57476..58748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|301891gene_9072Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|301891mRNA_9072-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9072CDS_9072Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9072 ID=mRNA_9072|Name=jgi.p|Nanoce1779_2|301891|organism=Nannochloropsis oceanica|type=mRNA|length=783bp
CAGCGCATGACGCGATTCGCTCCAAGCCACAGAACTTGGAGCAGCATGAG
CATGGTGATGACGGCACGAAAGGATGCGGAGAAAATGTCAGTAGGCCGCT
TTCCCAGCATGATATATACAATTGGGCGGCATGATGGCGAGTGCTGTCTT
TGGCGGTAGCTTTGCAGTGGACATGGGGGGCAGCAGCAGCGGATTATTAG
CACCTGTGCAAGCCGCAGTGGTCAATTTGCCTCGTTGCGAAGGCGGGCTG
GGCGAAGGGTGCGCAGCCATGGGGGAAGGGGAGGGCGAGCTCGTGAAGAA
GCTCCAGGAGCGGTCGGCAAAGAACTATGAGTCTAGCAAGAAGCAAAAGT
TGATAAAATACAACCTCAATAACTTCAAGGACTACTTCGCGGTCAAGAAC
CAAAAGCTCGTGGTCAAGCCTGACGGGAAATTCATCGCCATTGACAACAA
AGTCTACAAGCAGCTAGAGAAGGAGGGCAAAGTGGAAGGAAACTACTGGG
TGTCGAAGGAGTCTCCACCGGCAGATGGTACGGTTGACTTTATTCCGGCA
GGAAGTAGGAATGACGGGCCGACGCCTGACTTTTCGACGAACTAAGGAAC
ATGGGGAGGATGAATTTTGGCGTGCAAGGCAGTGAAGCAGTGTTGTTTCT
GAGTTTCTAGCTTGGAATTAGATAGCAACAAAAGAAATCAATATGAAGGG
CGAATGAGAATGTGAAAAATAGGGTACGGAAATTGCTGCGACGTCTTCCT
TGGTTTTCCTCTTCGCAGGTACAAGAGGCAGGA
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protein sequence of jgi.p|Nanoce1779_2|301891

>mRNA_9072-protein ID=mRNA_9072-protein|Name=jgi.p|Nanoce1779_2|301891|organism=Nannochloropsis oceanica|type=polypeptide|length=155bp
MMASAVFGGSFAVDMGGSSSGLLAPVQAAVVNLPRCEGGLGEGCAAMGEG
EGELVKKLQERSAKNYESSKKQKLIKYNLNNFKDYFAVKNQKLVVKPDGK
FIAIDNKVYKQLEKEGKVEGNYWVSKESPPADGTVDFIPAGSRNDGPTPD
FSTN*
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mRNA from alignment at scaffold_40:57476..58748+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9072 ID=mRNA_9072|Name=jgi.p|Nanoce1779_2|301891|organism=Nannochloropsis oceanica|type=mRNA|length=1273bp|location=Sequence derived from alignment at scaffold_40:57476..58748+ (Nannochloropsis oceanica)
CAGCGCATGACGCGATTCGCTCCAAGCCACAGAACTTGGAGCAGCATGAG
CATGGTGATGACGGCACGAAAGGATGCGGAGAAAATGTCAGTAGGCCGCT
TTCCCAGCATGATATATACAATTGGTGAGCCTTAATTTAAGGTTATATTT
CTCGCTCCACCATGTCCTTTCCTCCCAGACCTTTCCATGCATTCACATCC
CTGGTACTCAAGGGCGGCATGATGGCGAGTGCTGTCTTTGGCGGTAGCTT
TGCAGTGGACATGGGGGGCAGCAGCAGCGGATTATTAGCACCTGGTACGT
TGTATAGGGGTGGTAGTAGGATTATCGTTTGTACGCGTGTTTGAGTAATG
TGCCGCCTCCAGCATCCCCTCTTCCAGGCTTCTCGTTCTCCACGCCGCAT
GACTCACTTCTTTTCTTAGGCATCAGCTAAATCTCAATATGAGGAGCTAA
CATTCTTTGTATCTTTTGCATATAATATAATCTACCAGTGCAAGCCGCAG
TGGTCAATTTGCCTCGTTGCGAAGGCGGGCTGGGCGAAGGGTGCGCAGCC
ATGGGGGAAGGGGAGGGCGAGCTCGTGAAGAAGCTCCAGGAGCGGTCGGC
AAAGAACTATGTATGTACAGAGCCGAGAGTAGTGATTGAAAATCAACGAT
CGTCTGCTGCATATAAATGTTGTGGCTAGACGTATGCAGGTTTTTAATCT
ACACGAATTCGGGGGGGGGGCTTGAATGACAAGTGTGAGACTGAGAGACG
ACAAGGTTGCATGGATTAGTATAATCACACGTTCCCTTCCTCCCTCCCTT
CCTACTGCTCAATTAAAGGAGTCTAGCAAGAAGCAAAAGTTGATAAAATA
CAACCTCAATAACTTCAAGGACTACTTCGCGGTCAAGAACCAAAAGCTCG
TGGTCAAGCCTGACGGGAAATTCATCGCCATTGACAACAAAGTCTACAAG
CAGCTAGAGAAGGAGGGCAAAGTGGAAGGAAACTACTGGGTGTCGAAGGA
GTCTCCACCGGCAGATGGTACGGTTGACTTTATTCCGGCAGGAAGTAGGA
ATGACGGGCCGACGCCTGACTTTTCGACGAACTAAGGAACATGGGGAGGA
TGAATTTTGGCGTGCAAGGCAGTGAAGCAGTGTTGTTTCTGAGTTTCTAG
CTTGGAATTAGATAGCAACAAAAGAAATCAATATGAAGGGCGAATGAGAA
TGTGAAAAATAGGGTACGGAAATTGCTGCGACGTCTTCCTTGGTTTTCCT
CTTCGCAGGTACAAGAGGCAGGA
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Coding sequence (CDS) from alignment at scaffold_40:57476..58748+

>mRNA_9072 ID=mRNA_9072|Name=jgi.p|Nanoce1779_2|301891|organism=Nannochloropsis oceanica|type=CDS|length=1395bp|location=Sequence derived from alignment at scaffold_40:57476..58748+ (Nannochloropsis oceanica)
ATGATGGCGAGTGCTGTCTTTGGCGGTAGCTTTGCAGTGGACATGGGGGG
CAGCAGCAGCGGATTATTAGCACCTGTGCAAGCCGCAGTGGTCAATTTGC
CTCGTTGCGAAGGCGGGCTGGGCGAAGGGTGCGCAGCCATGGGGGAAGGG
GAGGGCGAGCTCGTGAAGAAGCTCCAGGAGCGGTCGGCAAAGAACTATGA
GTCTAGCAAGAAGCAAAAGTTGATAAAATACAACCTCAATAACTTCAAGG
ACTACTTCGCGGTCAAGAACCAAAAGCTCGTGGTCAAGCCTGACGGGAAA
TTCATCGCCATTGACAACAAAGTCTACAAGCAGCTAGAGAAGGAGGGCAA
AGTGGAAGGAAACTACTGGGTGTCGAAGGAGTCTCCACCGGCAGATGGTA
CGGTTGACTTTATTCCGGCAGGAAGTAGGAATGACGGGCCGACGCCTGAC
TTTTCGACGAACTAAATGATGGCGAGTGCTGTCTTTGGCGGTAGCTTTGC
AGTGGACATGGGGGGCAGCAGCAGCGGATTATTAGCACCTGTGCAAGCCG
CAGTGGTCAATTTGCCTCGTTGCGAAGGCGGGCTGGGCGAAGGGTGCGCA
GCCATGGGGGAAGGGGAGGGCGAGCTCGTGAAGAAGCTCCAGGAGCGGTC
GGCAAAGAACTATGAGTCTAGCAAGAAGCAAAAGTTGATAAAATACAACC
TCAATAACTTCAAGGACTACTTCGCGGTCAAGAACCAAAAGCTCGTGGTC
AAGCCTGACGGGAAATTCATCGCCATTGACAACAAAGTCTACAAGCAGCT
AGAGAAGGAGGGCAAAGTGGAAGGAAACTACTGGGTGTCGAAGGAGTCTC
CACCGGCAGATGGTACGGTTGACTTTATTCCGGCAGGAAGTAGGAATGAC
GGGCCGACGCCTGACTTTTCGACGAACTAAATGATGGCGAGTGCTGTCTT
TGGCGGTAGCTTTGCAGTGGACATGGGGGGCAGCAGCAGCGGATTATTAG
CACCTGTGCAAGCCGCAGTGGTCAATTTGCCTCGTTGCGAAGGCGGGCTG
GGCGAAGGGTGCGCAGCCATGGGGGAAGGGGAGGGCGAGCTCGTGAAGAA
GCTCCAGGAGCGGTCGGCAAAGAACTATGAGTCTAGCAAGAAGCAAAAGT
TGATAAAATACAACCTCAATAACTTCAAGGACTACTTCGCGGTCAAGAAC
CAAAAGCTCGTGGTCAAGCCTGACGGGAAATTCATCGCCATTGACAACAA
AGTCTACAAGCAGCTAGAGAAGGAGGGCAAAGTGGAAGGAAACTACTGGG
TGTCGAAGGAGTCTCCACCGGCAGATGGTACGGTTGACTTTATTCCGGCA
GGAAGTAGGAATGACGGGCCGACGCCTGACTTTTCGACGAACTAA
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Synonyms
Publications