jgi.p|Nanoce1779_2|608010, mRNA_9071 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608010
Unique NamemRNA_9071
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length468
Alignment locationscaffold_40:57249..58026 +

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Properties
Property NameValue
TranscriptId608096
TrackFilteredModels2
ProteinId608010
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:57249..58026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608010gene_9071Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608010mRNA_9071-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9071CDS_9071Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9071 ID=mRNA_9071|Name=jgi.p|Nanoce1779_2|608010|organism=Nannochloropsis oceanica|type=mRNA|length=468bp
CAGTACAAGACAGGCCGAACAATGAAGACGTCTTTGGCCTTCTTGTTCAT
TGCTGGTGTTGCTCAAGGGTACGTCCCCACACCCATTACATGCCCGGTTG
GGAGGATTTCCCAGCGCATGACGCGATTCGCTCCAAGCCACAGAACTTGG
AGCAGCATGAGCATGGTGATGACGGCACGAAAGGATGCGGAGAAAATGTC
AGTAGGCCGCTTTCCCAGCATGATATATACAATTGGTGAGCCTTAATTTA
AGGTTATATTTCTCGCTCCACCATGTCCTTTCCTCCCAGACCTTTCCATG
CATTCACATCCCTGGTACTCAAGGGCGGCATGATGGCGAGTGCTGTCTTT
GGCGGTAGCTTTGCAGTGGACATGGGGGGCAGCAGCAGCGGATTATTAGC
ACCTGTGCAAGCCGCAGTGGTCAATTTGCCTCGTTGCGAAGGCGGGCTGG
GCGAAGGGTGCGCAGCCA
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protein sequence of jgi.p|Nanoce1779_2|608010

>mRNA_9071-protein ID=mRNA_9071-protein|Name=jgi.p|Nanoce1779_2|608010|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MKTSLAFLFIAGVAQGYVPTPITCPVGRISQRMTRFAPSHRTWSSMSMVM
TARKDAEKMSVGRFPSMIYTIGEP*
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mRNA from alignment at scaffold_40:57249..58026+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9071 ID=mRNA_9071|Name=jgi.p|Nanoce1779_2|608010|organism=Nannochloropsis oceanica|type=mRNA|length=778bp|location=Sequence derived from alignment at scaffold_40:57249..58026+ (Nannochloropsis oceanica)
CAGTACAAGACAGGCCGAACAATGAAGACGTCTTTGGCCTTCTTGTTCAT
TGCTGGTGTTGCTCAAGGTACGTTGCTATATTAGAGTTGCACTATGCTTA
GCAAGGCGTCGGGGTTGGACATCAGACAGCGATGGCACGACGCCGTATTC
TATATCCACCTTCTCACACCACACACTCGACAGGGTACGTCCCCACACCC
ATTACATGCCCGGTTGGGAGGATTTCCCAGCGCATGACGCGATTCGCTCC
AAGCCACAGAACTTGGAGCAGCATGAGCATGGTGATGACGGCACGAAAGG
ATGCGGAGAAAATGTCAGTAGGCCGCTTTCCCAGCATGATATATACAATT
GGTGAGCCTTAATTTAAGGTTATATTTCTCGCTCCACCATGTCCTTTCCT
CCCAGACCTTTCCATGCATTCACATCCCTGGTACTCAAGGGCGGCATGAT
GGCGAGTGCTGTCTTTGGCGGTAGCTTTGCAGTGGACATGGGGGGCAGCA
GCAGCGGATTATTAGCACCTGGTACGTTGTATAGGGGTGGTAGTAGGATT
ATCGTTTGTACGCGTGTTTGAGTAATGTGCCGCCTCCAGCATCCCCTCTT
CCAGGCTTCTCGTTCTCCACGCCGCATGACTCACTTCTTTTCTTAGGCAT
CAGCTAAATCTCAATATGAGGAGCTAACATTCTTTGTATCTTTTGCATAT
AATATAATCTACCAGTGCAAGCCGCAGTGGTCAATTTGCCTCGTTGCGAA
GGCGGGCTGGGCGAAGGGTGCGCAGCCA
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Coding sequence (CDS) from alignment at scaffold_40:57249..58026+

>mRNA_9071 ID=mRNA_9071|Name=jgi.p|Nanoce1779_2|608010|organism=Nannochloropsis oceanica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_40:57249..58026+ (Nannochloropsis oceanica)
ATGAAGACGTCTTTGGCCTTCTTGTTCATTGCTGGTGTTGCTCAAGGGTA
CGTCCCCACACCCATTACATGCCCGGTTGGGAGGATTTCCCAGCGCATGA
CGCGATTCGCTCCAAGCCACAGAACTTGGAGCAGCATGAGCATGGTGATG
ACGGCACGAAAGGATGCGGAGAAAATGTCAGTAGGCCGCTTTCCCAGCAT
GATATATACAATTGGTGAGCCTTAAATGAAGACGTCTTTGGCCTTCTTGT
TCATTGCTGGTGTTGCTCAAGGGTACGTCCCCACACCCATTACATGCCCG
GTTGGGAGGATTTCCCAGCGCATGACGCGATTCGCTCCAAGCCACAGAAC
TTGGAGCAGCATGAGCATGGTGATGACGGCACGAAAGGATGCGGAGAAAA
TGTCAGTAGGCCGCTTTCCCAGCATGATATATACAATTGGTGAGCCTTAA
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Synonyms
Publications