jgi.p|Nanoce1779_2|608007, mRNA_9070 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|608007
Unique Name	mRNA_9070
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2546
Alignment location	scaffold_40:54559..57104 -

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Properties


Property Name	Value
TranscriptId	608093
Track	FilteredModels2
ProteinId	608007

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:54559..57104 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608007	gene_9070	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|608007	mRNA_9070-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9070	CDS_9070	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:54559..57104-
coding sequence from alignment at scaffold_40:54559..57104-

mRNA sequence

>mRNA_9070 ID=mRNA_9070|Name=jgi.p|Nanoce1779_2|608007|organism=Nannochloropsis oceanica|type=mRNA|length=2546bp
ACATCAGCGACACGCATAAGCACCAACATACCATCGGCATCGATTAGTAC
TTAAATGGCGGCTCGGCGGACGACTCGACGCAACACAAATAGCCTTTCGC
CGCCTCCCGACGAGGAGAAAGGAGATGTTGACGGGAGCAGCAGCCGGCGC
AGCAGTGGAGCCAGCAGCAGTGGAGCCAGCAGCAGCGCCAGCATGGCTTC
TCCGCCCTATTACGACAGCGTCGCTCCCAGCCAAGAGTCGGAGGACTTCT
TGAGTGAGCAGTTTCATCGCCAAGTGAGTCTGCAACAGCTGCAACAGGAG
AATCAGATTTCTTCGTCCTCGTCCTCTTCTTCCACGGCCCCGCCTCCGCC
ATTGTTGACAACAGTAGTGCCCCCTCCACCGCCTTCCTTCCACCCTCCCG
GCATGCACAAACGGGAGCTGTCTTCGCCTAGTATAAGTCGCCTGTGCTCC
GTTAATTCAGTCGAGATGCAGCTGGAAGGCGAAGGCCAACCAGGAAGCAT
GCTCAACTGCGCTTTTTCCACTACTCTTCCCTCAACCAAAAAAAGTAACG
GGAACGACACCCCCATGGGTATTCGGGCCCTCAAACAGAGCATACCTCCG
CAATCTCCGGGGGAATCAGCCTTGTATTCTTTTGGAGGAGCGGCTTTTCC
TCCCCCACCGCCGTCGCAGGAGGTGATGAGTGCCGCCATGTCGACTCGCA
TGCTCGTCATTTATCCTCCTGTCTGCCTCCAACATGAGACGCTAAATCAT
CAAGAGAGTGTGGATCGATTAGTATGCTTGGTGGACCCGCATAAAGGGGT
TTTGAGACGGAAGCGGTTTGCGAACCTGGAATGGGCAGATGGAACGAATT
TCGCTCCTGCTACCACCTCGGACTTGCTTCGTGTACATGAGTATGATTAC
ATCCGGCATTTGCAAAACATTTGCAACTCGTTGCCGCCCACCCCTTGCTG
CCAGGAAAAGCAGGGAGGAGAAGGAGTGGAAGGAGATTCTTCTTCTCTCC
TCGCCACCTTGCCCGCCCTCTTCCAGCCCCGGCATTCCCCCGCCCAACCT
CCGGCGGAGCTGCTGCGGCCCTCTTCCTTGGCTTCCCCGAACTCCCTTTC
TCCCTCTTCCTCTGAGGCACCCTCCCCTGCAGATGGTGAGAAAAATTCTA
CCAGAGAGGGTTCTGCCTACAACGCCAGCAGCAATATGAAAGGTAGCTGT
AGCGGCAACGGCAGCAGCAGCAGCAGCAACAGCAGCAGGCGGGCGCCTCT
AAGCGTGCGGCACCACACGTCTATCCGTGACTTTCCCGTGCATTTGTTGA
AAGCGCTGGCAGAGGTCAGAGAGGAGGATGAGGAGGAAGGCGGGGGCGAG
GAAGGAGGGCACCCTCCTACCCAGGAGCAGCAGCAGTACGGGCGAAGGCA
AGGCCCGGAGGACCGCAGCGGTGAAGCTTTTGACAAGAAGGAGCGGGCGG
GAAGTCTTCCTCAACACGAGGATGGCAAGGGCATTGTCTCTCAGTTCTTA
GACTCTGACACGCGTGTTTGTCGCGAATCCTTTCAAGTGGCGTGCGTTGC
TGCCGGGGCCGTCATTCAAGCCGTCGATCAAGCAGCCGCTGGTCGCAAAC
GTATTTTTGTTGCTACCCGTCCTCCGGGCCACCACGCCGGTCCTCGAGGC
GCTGTGCCTAGCCACTGCTTTTGGAAGTCCCCCTCCTCCTGCTCCTCGGG
ATTTTGTTTGATCAATAACGTGGCGGTCGGCGCGGCATATGCTAGGCAAA
CCTATGGCCGTCCCCCCTCCGGGCCCTTCGCTCGAGTCGCCATCATCGAT
TTTGACATTCACCACGGAAATGGAACGGAAGCCTGTGTAAGAGCACTGAA
ACCCTCGCGACTAGCTCTCCCCCTCCCTGCCTCCTGGGCACCCCAGACCT
ACGAACTGTTCAAGCCCTGGCTGTCCGAGGCAGAGGATGCCGACAACGTC
TTCTTCGGGAGCATCAACCTGGTGGACGGCCCGCATTTCTACCCGTGTTC
GGGGCGAGAAGTCGAGAATGACGAGGTCTCATACCCGAACATAATCAACG
TGGAGCTCTCCCCCGTCAGGCCGCCAACAGCAACAGCAGGGTCGACCAAG
GCGAAAGGGCTAGGCCCCAAAAAAGTGAGGGAGTTCTGCAGAAAGGCGAG
TGAAGAGTTCAGGGACAAGGTGGAAAGGTTGTTGCTGCCGAAGCTCAAGG
CTTTCAGCGCCGATTTGTTATTCATCTCCGCAGGGTACGTTTAAGGGAAA
GCGAGGGGGGGGGGAAGGGAAGGAGGAAGGGAACACGGCGGAAGCTTATT
ATCCGCTTGATTCACGCGCGCCACCCACCTCTATTTCCATTAAGTCAATC
TCCCCGCCCTTTCTTACCTCCTTCTTCCGCCCTAGATTTGATGGCCACGT
GGATGACTTTTATCACTACTTGACTGACGAGGACTATGCGTGGCTCACGC
GCGAGTTGGTGGGCGTCATGGAGCTGACCTCTGGGAAAATCATCAGTGTG
CTTGAAGGGGGTTACCATACCCGTGCGGAGAGAGAAGGAGGGGGAG

protein sequence of jgi.p|Nanoce1779_2|608007

>mRNA_9070-protein ID=mRNA_9070-protein|Name=jgi.p|Nanoce1779_2|608007|organism=Nannochloropsis oceanica|type=polypeptide|length=730bp
MAARRTTRRNTNSLSPPPDEEKGDVDGSSSRRSSGASSSGASSSASMASP
PYYDSVAPSQESEDFLSEQFHRQVSLQQLQQENQISSSSSSSSTAPPPPL
LTTVVPPPPPSFHPPGMHKRELSSPSISRLCSVNSVEMQLEGEGQPGSML
NCAFSTTLPSTKKSNGNDTPMGIRALKQSIPPQSPGESALYSFGGAAFPP
PPPSQEVMSAAMSTRMLVIYPPVCLQHETLNHQESVDRLVCLVDPHKGVL
RRKRFANLEWADGTNFAPATTSDLLRVHEYDYIRHLQNICNSLPPTPCCQ
EKQGGEGVEGDSSSLLATLPALFQPRHSPAQPPAELLRPSSLASPNSLSP
SSSEAPSPADGEKNSTREGSAYNASSNMKGSCSGNGSSSSSNSSRRAPLS
VRHHTSIRDFPVHLLKALAEVREEDEEEGGGEEGGHPPTQEQQQYGRRQG
PEDRSGEAFDKKERAGSLPQHEDGKGIVSQFLDSDTRVCRESFQVACVAA
GAVIQAVDQAAAGRKRIFVATRPPGHHAGPRGAVPSHCFWKSPSSCSSGF
CLINNVAVGAAYARQTYGRPPSGPFARVAIIDFDIHHGNGTEACVRALKP
SRLALPLPASWAPQTYELFKPWLSEAEDADNVFFGSINLVDGPHFYPCSG
REVENDEVSYPNIINVELSPVRPPTATAGSTKAKGLGPKKVREFCRKASE
EFRDKVERLLLPKLKAFSADLLFISAGYV*

mRNA from alignment at scaffold_40:54559..57104-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9070 ID=mRNA_9070|Name=jgi.p|Nanoce1779_2|608007|organism=Nannochloropsis oceanica|type=mRNA|length=2546bp|location=Sequence derived from alignment at scaffold_40:54559..57104- (Nannochloropsis oceanica)
ACATCAGCGACACGCATAAGCACCAACATACCATCGGCATCGATTAGTAC
TTAAATGGCGGCTCGGCGGACGACTCGACGCAACACAAATAGCCTTTCGC
CGCCTCCCGACGAGGAGAAAGGAGATGTTGACGGGAGCAGCAGCCGGCGC
AGCAGTGGAGCCAGCAGCAGTGGAGCCAGCAGCAGCGCCAGCATGGCTTC
TCCGCCCTATTACGACAGCGTCGCTCCCAGCCAAGAGTCGGAGGACTTCT
TGAGTGAGCAGTTTCATCGCCAAGTGAGTCTGCAACAGCTGCAACAGGAG
AATCAGATTTCTTCGTCCTCGTCCTCTTCTTCCACGGCCCCGCCTCCGCC
ATTGTTGACAACAGTAGTGCCCCCTCCACCGCCTTCCTTCCACCCTCCCG
GCATGCACAAACGGGAGCTGTCTTCGCCTAGTATAAGTCGCCTGTGCTCC
GTTAATTCAGTCGAGATGCAGCTGGAAGGCGAAGGCCAACCAGGAAGCAT
GCTCAACTGCGCTTTTTCCACTACTCTTCCCTCAACCAAAAAAAGTAACG
GGAACGACACCCCCATGGGTATTCGGGCCCTCAAACAGAGCATACCTCCG
CAATCTCCGGGGGAATCAGCCTTGTATTCTTTTGGAGGAGCGGCTTTTCC
TCCCCCACCGCCGTCGCAGGAGGTGATGAGTGCCGCCATGTCGACTCGCA
TGCTCGTCATTTATCCTCCTGTCTGCCTCCAACATGAGACGCTAAATCAT
CAAGAGAGTGTGGATCGATTAGTATGCTTGGTGGACCCGCATAAAGGGGT
TTTGAGACGGAAGCGGTTTGCGAACCTGGAATGGGCAGATGGAACGAATT
TCGCTCCTGCTACCACCTCGGACTTGCTTCGTGTACATGAGTATGATTAC
ATCCGGCATTTGCAAAACATTTGCAACTCGTTGCCGCCCACCCCTTGCTG
CCAGGAAAAGCAGGGAGGAGAAGGAGTGGAAGGAGATTCTTCTTCTCTCC
TCGCCACCTTGCCCGCCCTCTTCCAGCCCCGGCATTCCCCCGCCCAACCT
CCGGCGGAGCTGCTGCGGCCCTCTTCCTTGGCTTCCCCGAACTCCCTTTC
TCCCTCTTCCTCTGAGGCACCCTCCCCTGCAGATGGTGAGAAAAATTCTA
CCAGAGAGGGTTCTGCCTACAACGCCAGCAGCAATATGAAAGGTAGCTGT
AGCGGCAACGGCAGCAGCAGCAGCAGCAACAGCAGCAGGCGGGCGCCTCT
AAGCGTGCGGCACCACACGTCTATCCGTGACTTTCCCGTGCATTTGTTGA
AAGCGCTGGCAGAGGTCAGAGAGGAGGATGAGGAGGAAGGCGGGGGCGAG
GAAGGAGGGCACCCTCCTACCCAGGAGCAGCAGCAGTACGGGCGAAGGCA
AGGCCCGGAGGACCGCAGCGGTGAAGCTTTTGACAAGAAGGAGCGGGCGG
GAAGTCTTCCTCAACACGAGGATGGCAAGGGCATTGTCTCTCAGTTCTTA
GACTCTGACACGCGTGTTTGTCGCGAATCCTTTCAAGTGGCGTGCGTTGC
TGCCGGGGCCGTCATTCAAGCCGTCGATCAAGCAGCCGCTGGTCGCAAAC
GTATTTTTGTTGCTACCCGTCCTCCGGGCCACCACGCCGGTCCTCGAGGC
GCTGTGCCTAGCCACTGCTTTTGGAAGTCCCCCTCCTCCTGCTCCTCGGG
ATTTTGTTTGATCAATAACGTGGCGGTCGGCGCGGCATATGCTAGGCAAA
CCTATGGCCGTCCCCCCTCCGGGCCCTTCGCTCGAGTCGCCATCATCGAT
TTTGACATTCACCACGGAAATGGAACGGAAGCCTGTGTAAGAGCACTGAA
ACCCTCGCGACTAGCTCTCCCCCTCCCTGCCTCCTGGGCACCCCAGACCT
ACGAACTGTTCAAGCCCTGGCTGTCCGAGGCAGAGGATGCCGACAACGTC
TTCTTCGGGAGCATCAACCTGGTGGACGGCCCGCATTTCTACCCGTGTTC
GGGGCGAGAAGTCGAGAATGACGAGGTCTCATACCCGAACATAATCAACG
TGGAGCTCTCCCCCGTCAGGCCGCCAACAGCAACAGCAGGGTCGACCAAG
GCGAAAGGGCTAGGCCCCAAAAAAGTGAGGGAGTTCTGCAGAAAGGCGAG
TGAAGAGTTCAGGGACAAGGTGGAAAGGTTGTTGCTGCCGAAGCTCAAGG
CTTTCAGCGCCGATTTGTTATTCATCTCCGCAGGGTACGTTTAAGGGAAA
GCGAGGGGGGGGGGAAGGGAAGGAGGAAGGGAACACGGCGGAAGCTTATT
ATCCGCTTGATTCACGCGCGCCACCCACCTCTATTTCCATTAAGTCAATC
TCCCCGCCCTTTCTTACCTCCTTCTTCCGCCCTAGATTTGATGGCCACGT
GGATGACTTTTATCACTACTTGACTGACGAGGACTATGCGTGGCTCACGC
GCGAGTTGGTGGGCGTCATGGAGCTGACCTCTGGGAAAATCATCAGTGTG
CTTGAAGGGGGTTACCATACCCGTGCGGAGAGAGAAGGAGGGGGAG

Coding sequence (CDS) from alignment at scaffold_40:54559..57104-

>mRNA_9070 ID=mRNA_9070|Name=jgi.p|Nanoce1779_2|608007|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_40:54559..57104- (Nannochloropsis oceanica)
ATGGCGGCTCGGCGGACGACTCGACGCAACACAAATAGCCTTTCGCCGCC
TCCCGACGAGGAGAAAGGAGATGTTGACGGGAGCAGCAGCCGGCGCAGCA
GTGGAGCCAGCAGCAGTGGAGCCAGCAGCAGCGCCAGCATGGCTTCTCCG
CCCTATTACGACAGCGTCGCTCCCAGCCAAGAGTCGGAGGACTTCTTGAG
TGAGCAGTTTCATCGCCAAGTGAGTCTGCAACAGCTGCAACAGGAGAATC
AGATTTCTTCGTCCTCGTCCTCTTCTTCCACGGCCCCGCCTCCGCCATTG
TTGACAACAGTAGTGCCCCCTCCACCGCCTTCCTTCCACCCTCCCGGCAT
GCACAAACGGGAGCTGTCTTCGCCTAGTATAAGTCGCCTGTGCTCCGTTA
ATTCAGTCGAGATGCAGCTGGAAGGCGAAGGCCAACCAGGAAGCATGCTC
AACTGCGCTTTTTCCACTACTCTTCCCTCAACCAAAAAAAGTAACGGGAA
CGACACCCCCATGGGTATTCGGGCCCTCAAACAGAGCATACCTCCGCAAT
CTCCGGGGGAATCAGCCTTGTATTCTTTTGGAGGAGCGGCTTTTCCTCCC
CCACCGCCGTCGCAGGAGGTGATGAGTGCCGCCATGTCGACTCGCATGCT
CGTCATTTATCCTCCTGTCTGCCTCCAACATGAGACGCTAAATCATCAAG
AGAGTGTGGATCGATTAGTATGCTTGGTGGACCCGCATAAAGGGGTTTTG
AGACGGAAGCGGTTTGCGAACCTGGAATGGGCAGATGGAACGAATTTCGC
TCCTGCTACCACCTCGGACTTGCTTCGTGTACATGAGTATGATTACATCC
GGCATTTGCAAAACATTTGCAACTCGTTGCCGCCCACCCCTTGCTGCCAG
GAAAAGCAGGGAGGAGAAGGAGTGGAAGGAGATTCTTCTTCTCTCCTCGC
CACCTTGCCCGCCCTCTTCCAGCCCCGGCATTCCCCCGCCCAACCTCCGG
CGGAGCTGCTGCGGCCCTCTTCCTTGGCTTCCCCGAACTCCCTTTCTCCC
TCTTCCTCTGAGGCACCCTCCCCTGCAGATGGTGAGAAAAATTCTACCAG
AGAGGGTTCTGCCTACAACGCCAGCAGCAATATGAAAGGTAGCTGTAGCG
GCAACGGCAGCAGCAGCAGCAGCAACAGCAGCAGGCGGGCGCCTCTAAGC
GTGCGGCACCACACGTCTATCCGTGACTTTCCCGTGCATTTGTTGAAAGC
GCTGGCAGAGGTCAGAGAGGAGGATGAGGAGGAAGGCGGGGGCGAGGAAG
GAGGGCACCCTCCTACCCAGGAGCAGCAGCAGTACGGGCGAAGGCAAGGC
CCGGAGGACCGCAGCGGTGAAGCTTTTGACAAGAAGGAGCGGGCGGGAAG
TCTTCCTCAACACGAGGATGGCAAGGGCATTGTCTCTCAGTTCTTAGACT
CTGACACGCGTGTTTGTCGCGAATCCTTTCAAGTGGCGTGCGTTGCTGCC
GGGGCCGTCATTCAAGCCGTCGATCAAGCAGCCGCTGGTCGCAAACGTAT
TTTTGTTGCTACCCGTCCTCCGGGCCACCACGCCGGTCCTCGAGGCGCTG
TGCCTAGCCACTGCTTTTGGAAGTCCCCCTCCTCCTGCTCCTCGGGATTT
TGTTTGATCAATAACGTGGCGGTCGGCGCGGCATATGCTAGGCAAACCTA
TGGCCGTCCCCCCTCCGGGCCCTTCGCTCGAGTCGCCATCATCGATTTTG
ACATTCACCACGGAAATGGAACGGAAGCCTGTGTAAGAGCACTGAAACCC
TCGCGACTAGCTCTCCCCCTCCCTGCCTCCTGGGCACCCCAGACCTACGA
ACTGTTCAAGCCCTGGCTGTCCGAGGCAGAGGATGCCGACAACGTCTTCT
TCGGGAGCATCAACCTGGTGGACGGCCCGCATTTCTACCCGTGTTCGGGG
CGAGAAGTCGAGAATGACGAGGTCTCATACCCGAACATAATCAACGTGGA
GCTCTCCCCCGTCAGGCCGCCAACAGCAACAGCAGGGTCGACCAAGGCGA
AAGGGCTAGGCCCCAAAAAAGTGAGGGAGTTCTGCAGAAAGGCGAGTGAA
GAGTTCAGGGACAAGGTGGAAAGGTTGTTGCTGCCGAAGCTCAAGGCTTT
CAGCGCCGATTTGTTATTCATCTCCGCAGGGTACGTTTAA

Synonyms

Publications