jgi.p|Nanoce1779_2|608003, mRNA_9069 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608003
Unique NamemRNA_9069
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1199
Alignment locationscaffold_40:51817..53551 -

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Properties
Property NameValue
TranscriptId608089
TrackFilteredModels2
ProteinId608003
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:51817..53551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608003gene_9069Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608003mRNA_9069-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9069CDS_9069Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9069 ID=mRNA_9069|Name=jgi.p|Nanoce1779_2|608003|organism=Nannochloropsis oceanica|type=mRNA|length=1199bp
AGCTATACAACGGACAGGACGCATCATGCCAACGGACGAGGAGGAGCCTG
CGGCCGAGACCGCAGCAAATGCTCGCCCGGTGGGTAAGCGGAAGAGGAAA
CAGAAGCGGAAGCTGGCCGCTGCCCGTCCTTCCAAGCCAAGCCCCCAAAA
GAAAGCCAAACCAAGCGCGTCCGCCGAGGCAGAGGTGCGTCCATTTGCCC
AGAAGCAACTACACCAGAGAGGAGCGCAAGCAGCCAAGGAATATCTCGAA
CTGTGGTCTCTACGGGAGCGAGGCGGCGGATGGAAGTTTCATACCAAGCG
GCAAGTGTGGATTTTGAAACATATGTACACCAAAAGCACCATTGACAAGA
AGTTCTTCAACAATCTGGTGCTGCCCTATGTGAGCACTCTACGAGGCGGG
GCTAAGGAGCGTGTTTTGGCGGAGGCAGAGGGCTACCTACTTGAAGGACG
AAAGAGGAGACCAGGTGAAAGCGACGACGAAAATGACGAGGCCAGGGAGG
AGAAGAACCTAACACAGAAGCCCCAGGAGGGAGACGATGAGGTGACAAAG
CAAGCGAGGAGGAAACGGGCAAGGAAAATTGTGGCGGTCTTGTCAAGAGG
TGGCAAAGGTATGAAACATGATGGAGATAACGACTTATAAAGAGAGAACA
GAAAAAGAGACCAAACGAAGTAGGCAAGTAAGGGTAATAACTACAAGATC
TTATTATGCATGAAAGAGCATGTTTTTCAAATGTAAATTTGCTGCTGGAG
ATGACAAACACTGAAAAGCTGATATAAGTATTTGCTATTTCCTCTCCTTA
GCTTCCATCCCGCTACGCATCACCATTAAGTCCTCTTTTGTGTACGTTCC
TCATTCAGCCTCCACATCACCTCTCTCCTCGTCCCCTCAGTCCCCCATAT
TGTCTTCTTCCTGTTGTCCGTGATGTTCCTCGTCCGCTTTCGTCTCCACT
AAGCGAGTCAAGTCGATACAATGTCGGGAAGTATACTCCACATCATGCCA
GATCACCCACAACCCGCCCTTTCCCTCATTTTCCTCTGGTCGTAACACCA
CAACATCCACCCCCACCTCCTGTGGGCTCCAAATTCCAGGCACCATGTTA
ATCTGCCCTTTGCCCCGATAAACTGACTGAATCCGGCCCGCCTCCTGGGA
CAAGATACGAGGCCTGGGCTGCATGTGGCTGTCAAGCGTGTAGACAGGC
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protein sequence of jgi.p|Nanoce1779_2|608003

>mRNA_9069-protein ID=mRNA_9069-protein|Name=jgi.p|Nanoce1779_2|608003|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MPTDEEEPAAETAANARPVGKRKRKQKRKLAAARPSKPSPQKKAKPSASA
EAEVRPFAQKQLHQRGAQAAKEYLELWSLRERGGGWKFHTKRQVWILKHM
YTKSTIDKKFFNNLVLPYVSTLRGGAKERVLAEAEGYLLEGRKRRPGESD
DENDEAREEKNLTQKPQEGDDEVTKQARRKRARKIVAVLSRGGKGMKHDG
DNDL*
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mRNA from alignment at scaffold_40:51817..53551-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9069 ID=mRNA_9069|Name=jgi.p|Nanoce1779_2|608003|organism=Nannochloropsis oceanica|type=mRNA|length=1735bp|location=Sequence derived from alignment at scaffold_40:51817..53551- (Nannochloropsis oceanica)
AGCTATACAACGGACAGGACGCATCATGCCAACGGACGAGGAGGAGCCTG
CGGCCGAGACCGCAGCAAATGCTCGCCCGGTGGGTAAGCGGAAGAGGAAA
CAGAAGCGGAAGCTGGCCGCTGCCCGTCCTTCCAAGCCAAGCCCCCAAAA
GAAAGCCAAACCAAGCGCGTCCGCCGAGGCAGAGGTGCGTCCATTTGCCC
AGGTGGGGGAGATTAATGCTTGCCATGTGCACCGTTTCCAGGGAAGATGG
GGGCGTGCCTGTTTGCTACAGTTTTGGAAAGCGGGAAGACAGCCATCACG
CTACCTCGCTCCTCCAAACGACCCCTCGTCTGCCTACTGCTCTGTCTCAA
CCTCTCTTCTCCTTCATACACATAATAGAAGCAACTACACCAGAGAGGAG
CGCAAGCAGCCAAGGAATATCTCGAACTGTGGTCTCTACGGGTAAGCCTG
CCTCCACATGTTCTGTCTTCGAAGGCATGCAGGATGAGCGAGTCCTTGAC
CTGGTTGCCGAGCAGGCCTGAAGGTCACGGCAACGGGGGTAATGACTGTC
AGTGAGATGGGAAAACACTTGTCAATGACAAAGGTGTGATACACTCCGCC
TTCATGTAGAGTTTCTATCTGTTGCAGCTTCATCACGATTTGTAAGATAT
CTTCTTTTGTAATTTTACCAATAGGAGCGAGGCGGCGGATGGAAGTTTCA
TACCAAGCGGCAAGTGTGGATTTTGAAACATATGTACACCAAAAGCACCA
TTGACAAGAAGTTCTTCAACAATCTGGTGCTGCCCTATGTGAGCACTCTA
CGAGGCGGGGCTAAGGAGGTAAGGATGGGGAAATGGGTGTTGAAAGCGGG
AAGACGAGTCGTTGCCCCTTTTTTAGTATGTCGTTACCACCTTACCCCCC
CTTCCCTCACTCTTTTCTCCCTTTCTTACCTTCCCTTCCATGCAGCGTGT
TTTGGCGGAGGCAGAGGGCTACCTACTTGAAGGACGAAAGAGGAGACCAG
GTGAAAGCGACGACGAAAATGACGAGGCCAGGGAGGAGAAGAACCTAACA
CAGAAGCCCCAGGAGGGAGACGATGAGGTGACAAAGCAAGCGAGGAGGAA
ACGGGCAAGGAAAATTGTGGCGGTCTTGTCAAGAGGTGGCAAAGGTATGA
AACATGATGGAGATAACGACTTATAAAGAGAGAACAGAAAAAGAGACCAA
ACGAAGTAGGCAAGTAAGGGTAATAACTACAAGATCTTATTATGCATGAA
AGAGCATGTTTTTCAAATGTAAATTTGCTGCTGGAGATGACAAACACTGA
AAAGCTGATATAAGTATTTGCTATTTCCTCTCCTTAGCTTCCATCCCGCT
ACGCATCACCATTAAGTCCTCTTTTGTGTACGTTCCTCATTCAGCCTCCA
CATCACCTCTCTCCTCGTCCCCTCAGTCCCCCATATTGTCTTCTTCCTGT
TGTCCGTGATGTTCCTCGTCCGCTTTCGTCTCCACTAAGCGAGTCAAGTC
GATACAATGTCGGGAAGTATACTCCACATCATGCCAGATCACCCACAACC
CGCCCTTTCCCTCATTTTCCTCTGGTCGTAACACCACAACATCCACCCCC
ACCTCCTGTGGGCTCCAAATTCCAGGCACCATGTTAATCTGCCCTTTGCC
CCGATAAACTGACTGAATCCGGCCCGCCTCCTGGGACAAGATACGAGGCC
TGGGCTGCATGTGGCTGTCAAGCGTGTAGACAGGC
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Coding sequence (CDS) from alignment at scaffold_40:51817..53551-

>mRNA_9069 ID=mRNA_9069|Name=jgi.p|Nanoce1779_2|608003|organism=Nannochloropsis oceanica|type=CDS|length=2460bp|location=Sequence derived from alignment at scaffold_40:51817..53551- (Nannochloropsis oceanica)
CGTGTTTTGGCGGAGGCAGAGGGCTACCTACTTGAAGGACGAAAGAGGAG
ACCAGGTGAAAGCGACGACGAAAATGACGAGGCCAGGGAGGAGAAGAACC
TAACACAGAAGCCCCAGGAGGGAGACGATGAGGTGACAAAGCAAGCGAGG
AGGAAACGGGCAAGGAAAATTGTGGCGGTCTTGTCAAGAGGTGGCAAAGG
TATGAAACATGATGGAGATAACGACTTATAAGAGCGAGGCGGCGGATGGA
AGTTTCATACCAAGCGGCAAGTGTGGATTTTGAAACATATGTACACCAAA
AGCACCATTGACAAGAAGTTCTTCAACAATCTGGTGCTGCCCTATGTGAG
CACTCTACGAGGCGGGGCTAAGGAGAAGCAACTACACCAGAGAGGAGCGC
AAGCAGCCAAGGAATATCTCGAACTGTGGTCTCTACGGATGCCAACGGAC
GAGGAGGAGCCTGCGGCCGAGACCGCAGCAAATGCTCGCCCGGTGGGTAA
GCGGAAGAGGAAACAGAAGCGGAAGCTGGCCGCTGCCCGTCCTTCCAAGC
CAAGCCCCCAAAAGAAAGCCAAACCAAGCGCGTCCGCCGAGGCAGAGGTG
CGTCCATTTGCCCAGCGTGTTTTGGCGGAGGCAGAGGGCTACCTACTTGA
AGGACGAAAGAGGAGACCAGGTGAAAGCGACGACGAAAATGACGAGGCCA
GGGAGGAGAAGAACCTAACACAGAAGCCCCAGGAGGGAGACGATGAGGTG
ACAAAGCAAGCGAGGAGGAAACGGGCAAGGAAAATTGTGGCGGTCTTGTC
AAGAGGTGGCAAAGGTATGAAACATGATGGAGATAACGACTTATAAGAGC
GAGGCGGCGGATGGAAGTTTCATACCAAGCGGCAAGTGTGGATTTTGAAA
CATATGTACACCAAAAGCACCATTGACAAGAAGTTCTTCAACAATCTGGT
GCTGCCCTATGTGAGCACTCTACGAGGCGGGGCTAAGGAGAAGCAACTAC
ACCAGAGAGGAGCGCAAGCAGCCAAGGAATATCTCGAACTGTGGTCTCTA
CGGATGCCAACGGACGAGGAGGAGCCTGCGGCCGAGACCGCAGCAAATGC
TCGCCCGGTGGGTAAGCGGAAGAGGAAACAGAAGCGGAAGCTGGCCGCTG
CCCGTCCTTCCAAGCCAAGCCCCCAAAAGAAAGCCAAACCAAGCGCGTCC
GCCGAGGCAGAGGTGCGTCCATTTGCCCAGCGTGTTTTGGCGGAGGCAGA
GGGCTACCTACTTGAAGGACGAAAGAGGAGACCAGGTGAAAGCGACGACG
AAAATGACGAGGCCAGGGAGGAGAAGAACCTAACACAGAAGCCCCAGGAG
GGAGACGATGAGGTGACAAAGCAAGCGAGGAGGAAACGGGCAAGGAAAAT
TGTGGCGGTCTTGTCAAGAGGTGGCAAAGGTATGAAACATGATGGAGATA
ACGACTTATAAGAGCGAGGCGGCGGATGGAAGTTTCATACCAAGCGGCAA
GTGTGGATTTTGAAACATATGTACACCAAAAGCACCATTGACAAGAAGTT
CTTCAACAATCTGGTGCTGCCCTATGTGAGCACTCTACGAGGCGGGGCTA
AGGAGAAGCAACTACACCAGAGAGGAGCGCAAGCAGCCAAGGAATATCTC
GAACTGTGGTCTCTACGGATGCCAACGGACGAGGAGGAGCCTGCGGCCGA
GACCGCAGCAAATGCTCGCCCGGTGGGTAAGCGGAAGAGGAAACAGAAGC
GGAAGCTGGCCGCTGCCCGTCCTTCCAAGCCAAGCCCCCAAAAGAAAGCC
AAACCAAGCGCGTCCGCCGAGGCAGAGGTGCGTCCATTTGCCCAGCGTGT
TTTGGCGGAGGCAGAGGGCTACCTACTTGAAGGACGAAAGAGGAGACCAG
GTGAAAGCGACGACGAAAATGACGAGGCCAGGGAGGAGAAGAACCTAACA
CAGAAGCCCCAGGAGGGAGACGATGAGGTGACAAAGCAAGCGAGGAGGAA
ACGGGCAAGGAAAATTGTGGCGGTCTTGTCAAGAGGTGGCAAAGGTATGA
AACATGATGGAGATAACGACTTATAAGAGCGAGGCGGCGGATGGAAGTTT
CATACCAAGCGGCAAGTGTGGATTTTGAAACATATGTACACCAAAAGCAC
CATTGACAAGAAGTTCTTCAACAATCTGGTGCTGCCCTATGTGAGCACTC
TACGAGGCGGGGCTAAGGAGAAGCAACTACACCAGAGAGGAGCGCAAGCA
GCCAAGGAATATCTCGAACTGTGGTCTCTACGGATGCCAACGGACGAGGA
GGAGCCTGCGGCCGAGACCGCAGCAAATGCTCGCCCGGTGGGTAAGCGGA
AGAGGAAACAGAAGCGGAAGCTGGCCGCTGCCCGTCCTTCCAAGCCAAGC
CCCCAAAAGAAAGCCAAACCAAGCGCGTCCGCCGAGGCAGAGGTGCGTCC
ATTTGCCCAG
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Synonyms
Publications