jgi.p|Nanoce1779_2|301951, mRNA_9068 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|301951
Unique Name	mRNA_9068
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1832
Alignment location	scaffold_40:50018..52350 +

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Properties


Property Name	Value
TranscriptId	302037
Track	FilteredModels2
ProteinId	301951

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:50018..52350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|301951	gene_9068	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|301951	mRNA_9068-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9068	CDS_9068	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:50018..52350+
coding sequence from alignment at scaffold_40:50018..52350+

mRNA sequence

>mRNA_9068 ID=mRNA_9068|Name=jgi.p|Nanoce1779_2|301951|organism=Nannochloropsis oceanica|type=mRNA|length=1832bp
CCTTCCCCGTCTCCCCCTGCTGGTCTTGCTCATATGGTCATGTGGTCAGT
GTATGTCTCTGAAATGGGAATGGTACAATATTTTTTTGACATCCTCACAA
CGTAGACTGGCACACGGGGTTCGCCCGGGCGACGGCTGTGCGGGCGAAAC
TTCGAGCACGACCACGCACAGCCCGGCAGTCACTTCAATACGTGAACTAT
GGCTGACGCAGTACCGATGCCCTCGTTGCCGCCTTCCGTAGCCACCCTCT
CCACTGACCTAGTGGTCTTTATGCTGCAATTTCTTGGCGCCAAAGACACG
GCGCGCATGTGCCGAATCAGCTCTGCCTTCCACCATCTTGTCCAGGCGAA
TGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGCAGCGTCTGGTCTCCC
AACCCATCCCCCTTACGCCCCAGCAGAACCTTGCCGCTGCCCATACCTTG
CGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGGGCTGTATCACGTCAC
CAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACTTCCGGCGCGTGCCCC
GAGATTTCGGAACGGATTACAAAGGACAGCTCATGCGTCTGCGGCCCACC
CTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAACTTCCGTCCCACGCC
GGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCACAGGAACGAGTATTA
CAAATGGTACTTCTTTCTTTCGGCTATGTGAACAGCGAGAGACAGCACAC
GGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAAAATCGAGATAGAATG
GTGCGCCCACATTGCGGTTAGAGGCCACGAAGACGAGGACGATGCGGCAG
GCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCTTGTTTCGACATGACC
CTTCACCCGGATGAGATGGTGGACGGCCAGACAATTATTATTCAACAATG
TTTTCACGCATTGCTTTCAGAGCCACCGTCACTGATGCTCTGTGAAAGTG
CCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTTTGGGTGGGGACGTAT
GGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTTCACGACCACAAACAA
GGCGACTGCGACTACAACAGACGACGTCCGCACTACAGCAGGGATAGCAG
TAGCACCAGTGGCAGTACCACTACCCGTCATTATGGAGGGCATAAAGATC
GTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTCATTCCGCGTGGACGT
GTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCGGAGCAGACATGCGGC
CTGTCTACACGCTTGACAGCCACATGCAGCCCAGGCCTCGTATCTTGTCC
CAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGGCAAAGGGCAGATTAA
CATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGGGGGTGGATGTTGTGG
TGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGGTTGTGGGTGATCTGG
CATGATGTGGAGTATACTTCCCGACATTGTATCGACTTGACTCGCTTAGT
GGAGACGAAAGCGGACGAGGAACATCACGGACAACAGGAAGAAGACAATA
TGGGGGACTGAGGGGACGAGGAGAGAGGTGATGTGGAGGCTGAATGAGGA
ACGTACACAAAAGAGGACTTAATGGTGATGCGTAGCGGGATGGAAGCTAA
GGAGAGGAAATAGCAAATACTTATATCAGCTTTTCAGTGTTTGTCATCTC
CAGCAGCAAATTTACATTTGAAAAACATGCTCTTTCATGCATAATAAGAT
CTTGTAGTTATTACCCTTACTTGCCTACTTCG

protein sequence of jgi.p|Nanoce1779_2|301951

>mRNA_9068-protein ID=mRNA_9068-protein|Name=jgi.p|Nanoce1779_2|301951|organism=Nannochloropsis oceanica|type=polypeptide|length=471bp
MADAVPMPSLPPSVATLSTDLVVFMLQFLGAKDTARMCRISSAFHHLVQA
NDEALFRPHVLRQRLVSQPIPLTPQQNLAAAHTLRTALAPPGGWKGLYHV
TKYLLGVPCLGYFRRVPRDFGTDYKGQLMRLRPTLEVNVGVEISSNFRPT
PGLGLSLEVLTPTGTSITNGTSFFRLCEQRETAHGLCMKGRTVDQKIEIE
WCAHIAVRGHEDEDDAAGSQNSNEDGQSPCFDMTLHPDEMVDGQTIIIQQ
CFHALLSEPPSLMLCESAYCQELEGLRGFWVGTYGSHGQEIIQVRFTTTN
KATATTTDDVRTTAGIAVAPVAVPLPVIMEGIKIVGDANVPANEWSFRVD
VSTGPLDKARALGADMRPVYTLDSHMQPRPRILSQEAGRIQSVYRGKGQI
NMVPGIWSPQEVGVDVVVLRPEENEGKGGLWVIWHDVEYTSRHCIDLTRL
VETKADEEHHGQQEEDNMGD*

mRNA from alignment at scaffold_40:50018..52350+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9068 ID=mRNA_9068|Name=jgi.p|Nanoce1779_2|301951|organism=Nannochloropsis oceanica|type=mRNA|length=2333bp|location=Sequence derived from alignment at scaffold_40:50018..52350+ (Nannochloropsis oceanica)
CCTTCCCCGTCTCCCCCTGCTGGTCTTGCTCATATGGTCATGTGGTCAGT
GTATGTCTCTGAAATGGGAATGGTACAATATTTTTTTGACATCCTCACAA
CGTAGACTGGCACACGGGGTTCGCCCGGGCGACGGCTGTGCGGGGTACGT
AATCGTGTCTCAACTCCCAAGTAGCTTGTGCTGACATGGTACTCAGACGA
GGACGTGCGGACAATGGAGGCTTTTGAGGAAAGTGACGTGCAAGGGGAAT
TACTATATATATGTTTGAAGGATTGGAAACGGTCAACAGCAGCCCGCCCC
CCCTTTTTTTTTTCGCCTGCCTTCCCACATGTGTGATGCTCGACGACACT
TTATTTGACAGAGGATTCCTCAAGATTGACTAAGAGTCCATTCCCAAAGG
TTCTTTTTTCTCCACCGTATGTTCTGCTTGCGGCTGCAGAAGACCCCTGG
CTGCAGAAGACCCCTTCGAGGATATACCTGGCCCCGAAGTTTTCACCTAA
AATTTTCACCTAAAGGACGATCTATTCCCCCCCTCCAGCGAAACTTCGAG
CACGACCACGCACAGCCCGGCAGTCACTTCAATACGTGAACTATGGCTGA
CGCAGTACCGATGCCCTCGTTGCCGCCTTCCGTAGGTGAGTCTCGTATGT
CTACACACGTAGGGCTTTCCTTTTTTCTCTTTCCACGCGTACGCTCCCTC
CACCGCCTTCACATCAAACCCTTCCGCACCCCTGTCCCGTAGCCACCCTC
TCCACTGACCTAGTGGTCTTTATGCTGCAATTTCTTGGCGCCAAAGACAC
GGCGCGCATGTGCCGAATCAGCTCTGCCTTCCACCATCTTGTCCAGGCGA
ATGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGCAGCGTCTGGTCTCC
CAACCCATCCCCCTTACGCCCCAGCAGAACCTTGCCGCTGCCCATACCTT
GCGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGGGCTGTATCACGTCA
CCAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACTTCCGGCGCGTGCCC
CGAGATTTCGGAACGGATTACAAAGGACAGCTCATGCGTCTGCGGCCCAC
CCTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAACTTCCGTCCCACGC
CGGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCACAGGAACGAGTATT
ACAAATGGTACTTCTTTCTTTCGGCTATGTGAACAGCGAGAGACAGCACA
CGGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAAAATCGAGATAGAAT
GGTGCGCCCACATTGCGGTTAGAGGCCACGAAGACGAGGACGATGCGGCA
GGCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCTTGTTTCGACATGAC
CCTTCACCCGGATGAGATGGTGGACGGCCAGACAATTATTATTCAACAAT
GTTTTCACGCATTGCTTTCAGAGCCACCGTCACTGATGCTCTGTGAAAGT
GCCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTTTGGGTGGGGACGTA
TGGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTTCACGACCACAAACA
AGGCGACTGCGACTACAACAGACGACGTCCGCACTACAGCAGGGATAGCA
GTAGCACCAGTGGCAGTACCACTACCCGTCATTATGGAGGGCATAAAGAT
CGTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTCATTCCGCGTGGACG
TGTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCGGAGCAGACATGCGG
CCTGTCTACACGCTTGACAGCCACATGCAGCCCAGGCCTCGTATCTTGTC
CCAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGGCAAAGGGCAGATTA
ACATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGGGGGTGGATGTTGTG
GTGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGGTTGTGGGTGATCTG
GCATGATGTGGAGTATACTTCCCGACATTGTATCGACTTGACTCGCTTAG
TGGAGACGAAAGCGGACGAGGAACATCACGGACAACAGGAAGAAGACAAT
ATGGGGGACTGAGGGGACGAGGAGAGAGGTGATGTGGAGGCTGAATGAGG
AACGTACACAAAAGAGGACTTAATGGTGATGCGTAGCGGGATGGAAGCTA
AGGAGAGGAAATAGCAAATACTTATATCAGCTTTTCAGTGTTTGTCATCT
CCAGCAGCAAATTTACATTTGAAAAACATGCTCTTTCATGCATAATAAGA
TCTTGTAGTTATTACCCTTACTTGCCTACTTCG

Coding sequence (CDS) from alignment at scaffold_40:50018..52350+

>mRNA_9068 ID=mRNA_9068|Name=jgi.p|Nanoce1779_2|301951|organism=Nannochloropsis oceanica|type=CDS|length=2826bp|location=Sequence derived from alignment at scaffold_40:50018..52350+ (Nannochloropsis oceanica)
ATGGCTGACGCAGTACCGATGCCCTCGTTGCCGCCTTCCGTAGCCACCCT
CTCCACTGACCTAGTGGTCTTTATGCTGCAATTTCTTGGCGCCAAAGACA
CGGCGCGCATGTGCCGAATCAGCTCTGCCTTCCACCATCTTGTCCAGGCG
AATGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGCAGCGTCTGGTCTC
CCAACCCATCCCCCTTACGCCCCAGCAGAACCTTGCCGCTGCCCATACCT
TGCGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGGGCTGTATCACGTC
ACCAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACTTCCGGCGCGTGCC
CCGAGATTTCGGAACGGATTACAAAGGACAGCTCATGCGTCTGCGGCCCA
CCCTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAACTTCCGTCCCACG
CCGGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCACAGGAACGAGTAT
TACAAATGGTACTTCTTTCTTTCGGCTATGTGAACAGCGAGAGACAGCAC
ACGGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAAAATCGAGATAGAA
TGGTGCGCCCACATTGCGGTTAGAGGCCACGAAGACGAGGACGATGCGGC
AGGCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCTTGTTTCGACATGA
CCCTTCACCCGGATGAGATGGTGGACGGCCAGACAATTATTATTCAACAA
TGTTTTCACGCATTGCTTTCAGAGCCACCGTCACTGATGCTCTGTGAAAG
TGCCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTTTGGGTGGGGACGT
ATGGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTTCACGACCACAAAC
AAGGCGACTGCGACTACAACAGACGACGTCCGCACTACAGCAGGGATAGC
AGTAGCACCAGTGGCAGTACCACTACCCGTCATTATGGAGGGCATAAAGA
TCGTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTCATTCCGCGTGGAC
GTGTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCGGAGCAGACATGCG
GCCTGTCTACACGCTTGACAGCCACATGCAGCCCAGGCCTCGTATCTTGT
CCCAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGGCAAAGGGCAGATT
AACATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGGGGGTGGATGTTGT
GGTGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGGTTGTGGGTGATCT
GGCATGATGTGGAGTATACTTCCCGACATTGTATCGACTTGACTCGCTTA
GTGGAGACGAAAGCGGACGAGGAACATCACGGACAACAGGAAGAAGACAA
TATGGGGGACTGAATGGCTGACGCAGTACCGATGCCCTCGTTGCCGCCTT
CCGTAGCCACCCTCTCCACTGACCTAGTGGTCTTTATGCTGCAATTTCTT
GGCGCCAAAGACACGGCGCGCATGTGCCGAATCAGCTCTGCCTTCCACCA
TCTTGTCCAGGCGAATGACGAGGCCCTTTTTCGCCCGCACGTGCTTAGGC
AGCGTCTGGTCTCCCAACCCATCCCCCTTACGCCCCAGCAGAACCTTGCC
GCTGCCCATACCTTGCGAACCGCCTTGGCGCCACCGGGCGGTTGGAAAGG
GCTGTATCACGTCACCAAGTACTTGCTAGGAGTGCCGTGCCTTGGATACT
TCCGGCGCGTGCCCCGAGATTTCGGAACGGATTACAAAGGACAGCTCATG
CGTCTGCGGCCCACCCTCGAGGTGAATGTTGGTGTAGAGATAAGCAGCAA
CTTCCGTCCCACGCCGGGGCTTGGGCTGTCTCTGGAAGTTCTCACGCCCA
CAGGAACGAGTATTACAAATGGTACTTCTTTCTTTCGGCTATGTGAACAG
CGAGAGACAGCACACGGCTTGTGCATGAAAGGGCGCACAGTCGACCAGAA
AATCGAGATAGAATGGTGCGCCCACATTGCGGTTAGAGGCCACGAAGACG
AGGACGATGCGGCAGGCAGTCAGAACTCTAACGAAGATGGGCAAAGTCCT
TGTTTCGACATGACCCTTCACCCGGATGAGATGGTGGACGGCCAGACAAT
TATTATTCAACAATGTTTTCACGCATTGCTTTCAGAGCCACCGTCACTGA
TGCTCTGTGAAAGTGCCTACTGCCAAGAGCTGGAGGGCCTGCGTGGATTT
TGGGTGGGGACGTATGGGAGCCACGGGCAGGAGATCATCCAAGTGCGTTT
CACGACCACAAACAAGGCGACTGCGACTACAACAGACGACGTCCGCACTA
CAGCAGGGATAGCAGTAGCACCAGTGGCAGTACCACTACCCGTCATTATG
GAGGGCATAAAGATCGTGGGTGACGCCAACGTGCCCGCGAACGAGTGGTC
ATTCCGCGTGGACGTGTCGACCGGGCCACTCGACAAGGCTCGAGCTCTCG
GAGCAGACATGCGGCCTGTCTACACGCTTGACAGCCACATGCAGCCCAGG
CCTCGTATCTTGTCCCAGGAGGCGGGCCGGATTCAGTCAGTTTATCGGGG
CAAAGGGCAGATTAACATGGTGCCTGGAATTTGGAGCCCACAGGAGGTGG
GGGTGGATGTTGTGGTGTTACGACCAGAGGAAAATGAGGGAAAGGGCGGG
TTGTGGGTGATCTGGCATGATGTGGAGTATACTTCCCGACATTGTATCGA
CTTGACTCGCTTAGTGGAGACGAAAGCGGACGAGGAACATCACGGACAAC
AGGAAGAAGACAATATGGGGGACTGA

Synonyms

Publications