jgi.p|Nanoce1779_2|607981, mRNA_9064 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607981
Unique Name	mRNA_9064
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1527
Alignment location	scaffold_40:38868..40513 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	608067
Track	FilteredModels2
ProteinId	607981

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:38868..40513 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607981	gene_9064	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607981	mRNA_9064-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9064	CDS_9064	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:38868..40513+
coding sequence from alignment at scaffold_40:38868..40513+

mRNA sequence

>mRNA_9064 ID=mRNA_9064|Name=jgi.p|Nanoce1779_2|607981|organism=Nannochloropsis oceanica|type=mRNA|length=1527bp
AACGAGGCCGTTGGTGACAGAACCCGATTCGGAAACAGAGGCCCGCTGGA
CACCAAGACTTTGTCTCTGGCAGTTGGGTCGGGGGAGGAGTTTCCCACGT
TTCCTCGCGGGGGCAACGATCACGATTGAGCTTTTTCAAAATGCTTCGCT
CCCCATTTTTGCGCCAAAGCTCATTTCACAAAAGCTGTCATACTATGTGG
CACTCTGCTTATGCATGCATGACCCAACGAGATCAAGATCCCGTCACATC
CTCGACACAGGAAGCAAGATGGGGCGGGTCCGGCGGTATAAGAAGCTCAA
GGCCTGTGATCCTTGTGCGCGCGGGCGGGGCTCAGCGCAGTGCGAAGAGG
ATGCCAAGTATGATATGGCCCCGTCAGGGCTTGACTCGGACGAGGAGAGA
TGTACGTACGGCAAGGGGACAGAAACAAGACAGCAGGAGAGAGGAGGGAG
GTATAGCAAGCCTATTAAGATTGATGAATTATTAGATATCGTATCTGATA
TTAGATGTATGGCTCCATTCTTCCTTTACACATTTTATGCATCCGTATCA
CTTTTCACCTGTCATCAGTGCCAGCCATCAATCATGGAATCATGGCCATT
TTTGAGACATATTGTTCAACGCGCGTGTCACATTACGGCTATTCGCTGCC
TCTCCCGTCACTATCTCATCCTCCCCATTATCCGCATCAATCTGTGTACC
CCACAAATCCCCTTTCATCACACTCACCCACCCTCCCCTCCACAATACAA
ATACACAGTTGGCGGAACAGGCGGCGGCCAAAAAAGACGGCGACAAGAGC
GACGATGGGCAAAAGATGCCTTAAGGGACAACGAATATATCGAGGAGCTC
GAGAGCCAAGCCTTGAAGAAGCGAAAGAAGCAACTGCCGCAGGCCTCCAT
CCAACCCAAGCAGCCGAATGAGAGCATGAAGGCCTTCCAACACCGCGTCA
GACAAGATCAAAAAGCGCTCCTCCGCGAAAGCAATTTGGCAAACAGTACT
ACCAAGACCCGGCGTCGTGAGTACATGAAAAAGAAGAAGCAGGACAAGAA
ACGCAAGGCTCAGGGTCTGCCTGCTCTCCCTGACCCTCGAGCAGAGGTCG
AAGACAAGGAGGAGGAGGAGGAGCACGGGGAGCGTGCAAGTCAGCGCGCG
TGGATGGGGCCGGTGCCATCGTTTGCACGAGCAGAATCGATAACATTTGG
GGAGAGGAACGATGCGCCGCCAAATTTGCGCTTACCTCGTTTGCCGTATG
AGCGCAAGGCTCAAGCTCAATCCGTCGCTGCGGCCGAAGCAAGGCAAAAA
CAGACTGGAAAGGAGAGAGTAGAGAAGAGGGAGTTGAAGAGGTGGGTGAC
AGGCAGGAAGGAGGAGGGGCAAAGTGCAGCGGCGGCGGCTGCGAGGACGA
AGCAACCACCTGCGGAGAAGGCAAAGTGGGCCCGGCTGAGAGAGGAGGCC
CAGCAAGCCTACCGCACTATGAAGGAAGGCAAGCAGGGTTCGGTCAAAAC
ATAAAGAAAGACAAGATACACTCGATG

protein sequence of jgi.p|Nanoce1779_2|607981

>mRNA_9064-protein ID=mRNA_9064-protein|Name=jgi.p|Nanoce1779_2|607981|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MHDPTRSRSRHILDTGSKMGRVRRYKKLKACDPCARGRGSAQCEEDAKYD
MAPSGLDSDEERCTYGKGTETRQQERGGRYSKPIKIDELLDIVSDIRCMA
PFFLYTFYASVSLFTCHQCQPSIMESWPFLRHIVQRACHITAIRCLSRHY
LILPIIRINLCTPQIPFHHTHPPSPPQYKYTVGGTGGGQKRRRQERRWAK
DALRDNEYIEELESQALKKRKKQLPQASIQPKQPNESMKAFQHRVRQDQK
ALLRESNLANSTTKTRRREYMKKKKQDKKRKAQGLPALPDPRAEVEDKEE
EEEHGERASQRAWMGPVPSFARAESITFGERNDAPPNLRLPRLPYERKAQ
AQSVAAAEARQKQTGKERVEKRELKRWVTGRKEEGQSAAAAAARTKQPPA
EKAKWARLREEAQQAYRTMKEGKQGSVKT*

mRNA from alignment at scaffold_40:38868..40513+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9064 ID=mRNA_9064|Name=jgi.p|Nanoce1779_2|607981|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp|location=Sequence derived from alignment at scaffold_40:38868..40513+ (Nannochloropsis oceanica)
AACGAGGCCGTTGGTGACAGAACCCGATTCGGAAACAGAGGCCCGCTGGA
CACCAAGACTTTGTCTCTGGCAGTTGGGTCGGGGGAGGAGTTTCCCACGT
TTCCTCGCGGGGGCAACGATCACGATTGAGCTTTTTCAAAATGCTTCGCT
CCCCATTTTTGCGCCAAAGCTCATTTCACAAAAGCTGTCATACTATGTGG
CACTCTGCTTATGCATGCATGACCCAACGAGATCAAGATCCCGTCACATC
CTCGACACAGGAAGCAAGATGGGGCGGGTCCGGCGGTATAAGAAGCTCAA
GGCCTGTGATCCTTGTGCGCGCGGGCGGGGCTCAGCGCAGTGCGAAGAGG
ATGCCAAGTATGATATGGCCCCGTCAGGGCTTGACTCGGACGAGGAGAGA
TGTACGTACGGCAAGGGGACAGAAACAAGACAGCAGGAGAGAGGAGGGAG
GTATAGCAAGCCTATTAAGATTGATGAATTATTAGATATCGTATCTGATA
TTAGATGTATGGCTCCATTCTTCCTTTACACATTTTATGCATCCGTATCA
CTTTTCACCTGTCATCAGTGCCAGCCATCAATCATGGAATCATGGCCATT
TTTGAGACATATTGTTCAACGCGCGTGTCACATTACGGCTATTCGCTGCC
TCTCCCGTCACTATCTCATCCTCCCCATTATCCGCATCAATCTGTGTACC
CCACAAATCCCCTTTCATCACACTCACCCACCCTCCCCTCCACAATACAA
ATACACAGTTGGCGGAACAGGCGGCGGCCAAAAAAGACGGCGACAAGAGC
GACGATGGGCAAAAGATGCCTTAAGGGACAACGAATATATCGAGGAGCTC
GAGAGCCAAGCCTTGAAGAAGCGAAAGAAGCAACTGCCGCAGGCCTCCAT
CCAACCCAAGCAGCCGAATGAGGTTTGTTGGTAGATATAACGGCTTGATG
ACCATATCTCAAGTCACCGTAGAAATCCTCCAGCTTCTCTCTCTTGTTCG
TCTTGCTTACTTGCCCCTCCCCTCTTACATCCTTCCTACAGAGCATGAAG
GCCTTCCAACACCGCGTCAGACAAGATCAAAAAGCGCTCCTCCGCGAAAG
CAATTTGGCAAACAGTACTACCAAGACCCGGCGTCGTGAGTACATGAAAA
AGAAGAAGCAGGACAAGAAACGCAAGGCTCAGGGTCTGCCTGCTCTCCCT
GACCCTCGAGCAGAGGTCGAAGACAAGGAGGAGGAGGAGGAGCACGGGGA
GCGTGCAAGTCAGCGCGCGTGGATGGGGCCGGTGCCATCGTTTGCACGAG
CAGAATCGATAACATTTGGGGAGAGGAACGATGCGCCGCCAAATTTGCGC
TTACCTCGTTTGCCGTATGAGCGCAAGGCTCAAGCTCAATCCGTCGCTGC
GGCCGAAGCAAGGCAAAAACAGACTGGAAAGGAGAGAGTAGAGAAGAGGG
AGTTGAAGAGGTGGGTGACAGGCAGGAAGGAGGAGGGGCAAAGTGCAGCG
GCGGCGGCTGCGAGGACGAAGCAACCACCTGCGGAGAAGGCAAAGTGGGC
CCGGCTGAGAGAGGAGGCCCAGCAAGCCTACCGCACTATGAAGGAAGGCA
AGCAGGGTTCGGTCAAAACATAAAGAAAGACAAGATACACTCGATG

Coding sequence (CDS) from alignment at scaffold_40:38868..40513+

>mRNA_9064 ID=mRNA_9064|Name=jgi.p|Nanoce1779_2|607981|organism=Nannochloropsis oceanica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_40:38868..40513+ (Nannochloropsis oceanica)
ATGCATGACCCAACGAGATCAAGATCCCGTCACATCCTCGACACAGGAAG
CAAGATGGGGCGGGTCCGGCGGTATAAGAAGCTCAAGGCCTGTGATCCTT
GTGCGCGCGGGCGGGGCTCAGCGCAGTGCGAAGAGGATGCCAAGTATGAT
ATGGCCCCGTCAGGGCTTGACTCGGACGAGGAGAGATGTACGTACGGCAA
GGGGACAGAAACAAGACAGCAGGAGAGAGGAGGGAGGTATAGCAAGCCTA
TTAAGATTGATGAATTATTAGATATCGTATCTGATATTAGATGTATGGCT
CCATTCTTCCTTTACACATTTTATGCATCCGTATCACTTTTCACCTGTCA
TCAGTGCCAGCCATCAATCATGGAATCATGGCCATTTTTGAGACATATTG
TTCAACGCGCGTGTCACATTACGGCTATTCGCTGCCTCTCCCGTCACTAT
CTCATCCTCCCCATTATCCGCATCAATCTGTGTACCCCACAAATCCCCTT
TCATCACACTCACCCACCCTCCCCTCCACAATACAAATACACAGTTGGCG
GAACAGGCGGCGGCCAAAAAAGACGGCGACAAGAGCGACGATGGGCAAAA
GATGCCTTAAGGGACAACGAATATATCGAGGAGCTCGAGAGCCAAGCCTT
GAAGAAGCGAAAGAAGCAACTGCCGCAGGCCTCCATCCAACCCAAGCAGC
CGAATGAGAGCATGAAGGCCTTCCAACACCGCGTCAGACAAGATCAAAAA
GCGCTCCTCCGCGAAAGCAATTTGGCAAACAGTACTACCAAGACCCGGCG
TCGTGAGTACATGAAAAAGAAGAAGCAGGACAAGAAACGCAAGGCTCAGG
GTCTGCCTGCTCTCCCTGACCCTCGAGCAGAGGTCGAAGACAAGGAGGAG
GAGGAGGAGCACGGGGAGCGTGCAAGTCAGCGCGCGTGGATGGGGCCGGT
GCCATCGTTTGCACGAGCAGAATCGATAACATTTGGGGAGAGGAACGATG
CGCCGCCAAATTTGCGCTTACCTCGTTTGCCGTATGAGCGCAAGGCTCAA
GCTCAATCCGTCGCTGCGGCCGAAGCAAGGCAAAAACAGACTGGAAAGGA
GAGAGTAGAGAAGAGGGAGTTGAAGAGGTGGGTGACAGGCAGGAAGGAGG
AGGGGCAAAGTGCAGCGGCGGCGGCTGCGAGGACGAAGCAACCACCTGCG
GAGAAGGCAAAGTGGGCCCGGCTGAGAGAGGAGGCCCAGCAAGCCTACCG
CACTATGAAGGAAGGCAAGCAGGGTTCGGTCAAAACATAAATGCATGACC
CAACGAGATCAAGATCCCGTCACATCCTCGACACAGGAAGCAAGATGGGG
CGGGTCCGGCGGTATAAGAAGCTCAAGGCCTGTGATCCTTGTGCGCGCGG
GCGGGGCTCAGCGCAGTGCGAAGAGGATGCCAAGTATGATATGGCCCCGT
CAGGGCTTGACTCGGACGAGGAGAGATGTACGTACGGCAAGGGGACAGAA
ACAAGACAGCAGGAGAGAGGAGGGAGGTATAGCAAGCCTATTAAGATTGA
TGAATTATTAGATATCGTATCTGATATTAGATGTATGGCTCCATTCTTCC
TTTACACATTTTATGCATCCGTATCACTTTTCACCTGTCATCAGTGCCAG
CCATCAATCATGGAATCATGGCCATTTTTGAGACATATTGTTCAACGCGC
GTGTCACATTACGGCTATTCGCTGCCTCTCCCGTCACTATCTCATCCTCC
CCATTATCCGCATCAATCTGTGTACCCCACAAATCCCCTTTCATCACACT
CACCCACCCTCCCCTCCACAATACAAATACACAGTTGGCGGAACAGGCGG
CGGCCAAAAAAGACGGCGACAAGAGCGACGATGGGCAAAAGATGCCTTAA
GGGACAACGAATATATCGAGGAGCTCGAGAGCCAAGCCTTGAAGAAGCGA
AAGAAGCAACTGCCGCAGGCCTCCATCCAACCCAAGCAGCCGAATGAGAG
CATGAAGGCCTTCCAACACCGCGTCAGACAAGATCAAAAAGCGCTCCTCC
GCGAAAGCAATTTGGCAAACAGTACTACCAAGACCCGGCGTCGTGAGTAC
ATGAAAAAGAAGAAGCAGGACAAGAAACGCAAGGCTCAGGGTCTGCCTGC
TCTCCCTGACCCTCGAGCAGAGGTCGAAGACAAGGAGGAGGAGGAGGAGC
ACGGGGAGCGTGCAAGTCAGCGCGCGTGGATGGGGCCGGTGCCATCGTTT
GCACGAGCAGAATCGATAACATTTGGGGAGAGGAACGATGCGCCGCCAAA
TTTGCGCTTACCTCGTTTGCCGTATGAGCGCAAGGCTCAAGCTCAATCCG
TCGCTGCGGCCGAAGCAAGGCAAAAACAGACTGGAAAGGAGAGAGTAGAG
AAGAGGGAGTTGAAGAGGTGGGTGACAGGCAGGAAGGAGGAGGGGCAAAG
TGCAGCGGCGGCGGCTGCGAGGACGAAGCAACCACCTGCGGAGAAGGCAA
AGTGGGCCCGGCTGAGAGAGGAGGCCCAGCAAGCCTACCGCACTATGAAG
GAAGGCAAGCAGGGTTCGGTCAAAACATAA

Synonyms

Publications