jgi.p|Nanoce1779_2|607955, mRNA_9060 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607955
Unique Name	mRNA_9060
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1846
Alignment location	scaffold_40:30534..32379 -

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Properties


Property Name	Value
TranscriptId	608041
Track	FilteredModels2
ProteinId	607955

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:30534..32379 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607955	gene_9060	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607955	mRNA_9060-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9060	CDS_9060	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:30534..32379-
coding sequence from alignment at scaffold_40:30534..32379-

mRNA sequence

>mRNA_9060 ID=mRNA_9060|Name=jgi.p|Nanoce1779_2|607955|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp
TGGCCAAGCTGAAGGCATTGGAGGAAGAACGCTTAGCCCTGCTGCACGAC
AAAGCGGAGCTCACAGATGAATTAAAGGAAACGAAGGCGACATTGGACGA
GGCTCGAGTACGTCATACCCAAATGGAGAAGGAACGGGCTGCCTTAGCCT
TGCGCCTGGCGGAAATGGAAGAGCAGGAGCAGCGGCGTCAGACGCAATGT
GCAGAAACTCCAAGAGAGAAATGCAAGGGAGAAATTGAGGGGTTACGTAC
CCAGGTCAAGTGTCTGGAGGAGGAATGCCGAGTCGCTACAGAGCGTGCAA
GTGCAGCAGAGGCGACTGCCGCGAAGATAGCCGAAGCAGAAGTGCGATTG
GCAGCACAGCTTGGGCAGGAGCAAGAACAGTTAGCAGCGACGGTGGATAA
GCAAAGTGAACACGTGCAGGCCCTCCTAGCTCAGAGGGGTCAGTGGGACA
TGGAGAAAGAGGGATTGACGGTACGGGTGGCTGAGCTCGTTTCGTCGTTG
AAAATAGAGAAGCAAGAGGCTAAAAATGCCCTGCAATCCCTGAAGCAAGC
TAAGGAGACAGTTGCGACCAATGCAGCTGAAGCGGCGGCGGTGCTCGTGG
AGAAAGAAAGGATCATAGTGCAATTACAGACAATGGAGGCTGAAAAGACT
TGTCTGCTTAAGGAGATCGATGAGGAACGCCAACATTGGGTGGCGGAAGC
GCAGGGTCACGAGAAGCAGCGATTGGAATGGACAAGCAAGAAAGAAGAGA
TGCTTGCACGAATGGGGGAGCTGGAGGCCGCGCTTGAGGCTGCGAGGGAG
GAAGTGAAGGAAGGCAGACGATGTGCGGCGGTGAAACTGGAAGAGAGGGA
GGCCGCGTGGGTGATGGAGAAGCAGGACATGGCAACGCGACTGCTGGTGG
TGGAGGGGGACAAGACGCGTCTCAAGACTACATTAGAGGAAGAAATGCAG
CGACGACTAGACAAGGTGAAGGAGGAGGAGGTTGGACTTGCGGAGTGGAT
GGAGGAGAGGCAGGCCCTGCTTCTGACAGTGGCGGAGCTCAAGGGCGATG
TAGCGTCATCCAGTGAAGAAGCAGCAGCGCTACGGGATGAAGCAAGAGAT
GCATGGAGGTCACTGACACTAGCCAAGGAGGAGGTGGAGGCGCATGCTGC
GGCGGAGAGGGAGCTGGAACGGAGCTTGCAGCTGATGCAGACGCAGGTCA
TTCACGTGGAGGGTAATGTGAGAGCTGAACGGGAGGCAAGAGAGGAGGCG
GATAGCGAGGCGGCGGGGGCGATGGACAGGTTGCGGGCATTGGAGGGGGA
GATGGGTGAGGTGGTGGAGGAAAGGAATACGTATCAGGAGGGGTTAGTGG
ATGCTAAGTTGAAAATTGCGCAGTTGAGTGAGGAATTGGACTCGCTGTCG
TTTCAGTTGCAGCACTATCGCATGGGGAAGTGAGAGGGTGGTAGTTGTGT
AGTAGATATAAGATAAGTAAGGGAAGGGAGACAGAAACATTCCGTATTTT
GCTGTTGCTTCTTTTTTTGGGCTGTGCAATAGGATACGGATGCATAAGTA
GTGGTGGTAGAGGAAGATCGATAAGACGGTAGGCACAAATTCCAATTGAG
AACACATAAATACAACACCTGTCATGCGCAAAATACTCAATGAAGAGTCT
TTGTATCTTCTTCCAATCTTTTTTCCTCTTTCTTTGTAGACATGCTTCTT
CAAATTGCAGCACAACATCTTGTCATGAGCGTTCCCCACACACTCATCGA
CTTAAGAAATCGCCCCCACCCCCACTACGGTACCGAAAACCACCGCCACC
GGTCAATCCTCGCTCTCCTCGGTGGTTATAACCTCCATCCCCCCCC

protein sequence of jgi.p|Nanoce1779_2|607955

>mRNA_9060-protein ID=mRNA_9060-protein|Name=jgi.p|Nanoce1779_2|607955|organism=Nannochloropsis oceanica|type=polypeptide|length=437bp
MEKERAALALRLAEMEEQEQRRQTQCAETPREKCKGEIEGLRTQVKCLEE
ECRVATERASAAEATAAKIAEAEVRLAAQLGQEQEQLAATVDKQSEHVQA
LLAQRGQWDMEKEGLTVRVAELVSSLKIEKQEAKNALQSLKQAKETVATN
AAEAAAVLVEKERIIVQLQTMEAEKTCLLKEIDEERQHWVAEAQGHEKQR
LEWTSKKEEMLARMGELEAALEAAREEVKEGRRCAAVKLEEREAAWVMEK
QDMATRLLVVEGDKTRLKTTLEEEMQRRLDKVKEEEVGLAEWMEERQALL
LTVAELKGDVASSSEEAAALRDEARDAWRSLTLAKEEVEAHAAAERELER
SLQLMQTQVIHVEGNVRAEREAREEADSEAAGAMDRLRALEGEMGEVVEE
RNTYQEGLVDAKLKIAQLSEELDSLSFQLQHYRMGK*

mRNA from alignment at scaffold_40:30534..32379-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9060 ID=mRNA_9060|Name=jgi.p|Nanoce1779_2|607955|organism=Nannochloropsis oceanica|type=mRNA|length=1846bp|location=Sequence derived from alignment at scaffold_40:30534..32379- (Nannochloropsis oceanica)
TGGCCAAGCTGAAGGCATTGGAGGAAGAACGCTTAGCCCTGCTGCACGAC
AAAGCGGAGCTCACAGATGAATTAAAGGAAACGAAGGCGACATTGGACGA
GGCTCGAGTACGTCATACCCAAATGGAGAAGGAACGGGCTGCCTTAGCCT
TGCGCCTGGCGGAAATGGAAGAGCAGGAGCAGCGGCGTCAGACGCAATGT
GCAGAAACTCCAAGAGAGAAATGCAAGGGAGAAATTGAGGGGTTACGTAC
CCAGGTCAAGTGTCTGGAGGAGGAATGCCGAGTCGCTACAGAGCGTGCAA
GTGCAGCAGAGGCGACTGCCGCGAAGATAGCCGAAGCAGAAGTGCGATTG
GCAGCACAGCTTGGGCAGGAGCAAGAACAGTTAGCAGCGACGGTGGATAA
GCAAAGTGAACACGTGCAGGCCCTCCTAGCTCAGAGGGGTCAGTGGGACA
TGGAGAAAGAGGGATTGACGGTACGGGTGGCTGAGCTCGTTTCGTCGTTG
AAAATAGAGAAGCAAGAGGCTAAAAATGCCCTGCAATCCCTGAAGCAAGC
TAAGGAGACAGTTGCGACCAATGCAGCTGAAGCGGCGGCGGTGCTCGTGG
AGAAAGAAAGGATCATAGTGCAATTACAGACAATGGAGGCTGAAAAGACT
TGTCTGCTTAAGGAGATCGATGAGGAACGCCAACATTGGGTGGCGGAAGC
GCAGGGTCACGAGAAGCAGCGATTGGAATGGACAAGCAAGAAAGAAGAGA
TGCTTGCACGAATGGGGGAGCTGGAGGCCGCGCTTGAGGCTGCGAGGGAG
GAAGTGAAGGAAGGCAGACGATGTGCGGCGGTGAAACTGGAAGAGAGGGA
GGCCGCGTGGGTGATGGAGAAGCAGGACATGGCAACGCGACTGCTGGTGG
TGGAGGGGGACAAGACGCGTCTCAAGACTACATTAGAGGAAGAAATGCAG
CGACGACTAGACAAGGTGAAGGAGGAGGAGGTTGGACTTGCGGAGTGGAT
GGAGGAGAGGCAGGCCCTGCTTCTGACAGTGGCGGAGCTCAAGGGCGATG
TAGCGTCATCCAGTGAAGAAGCAGCAGCGCTACGGGATGAAGCAAGAGAT
GCATGGAGGTCACTGACACTAGCCAAGGAGGAGGTGGAGGCGCATGCTGC
GGCGGAGAGGGAGCTGGAACGGAGCTTGCAGCTGATGCAGACGCAGGTCA
TTCACGTGGAGGGTAATGTGAGAGCTGAACGGGAGGCAAGAGAGGAGGCG
GATAGCGAGGCGGCGGGGGCGATGGACAGGTTGCGGGCATTGGAGGGGGA
GATGGGTGAGGTGGTGGAGGAAAGGAATACGTATCAGGAGGGGTTAGTGG
ATGCTAAGTTGAAAATTGCGCAGTTGAGTGAGGAATTGGACTCGCTGTCG
TTTCAGTTGCAGCACTATCGCATGGGGAAGTGAGAGGGTGGTAGTTGTGT
AGTAGATATAAGATAAGTAAGGGAAGGGAGACAGAAACATTCCGTATTTT
GCTGTTGCTTCTTTTTTTGGGCTGTGCAATAGGATACGGATGCATAAGTA
GTGGTGGTAGAGGAAGATCGATAAGACGGTAGGCACAAATTCCAATTGAG
AACACATAAATACAACACCTGTCATGCGCAAAATACTCAATGAAGAGTCT
TTGTATCTTCTTCCAATCTTTTTTCCTCTTTCTTTGTAGACATGCTTCTT
CAAATTGCAGCACAACATCTTGTCATGAGCGTTCCCCACACACTCATCGA
CTTAAGAAATCGCCCCCACCCCCACTACGGTACCGAAAACCACCGCCACC
GGTCAATCCTCGCTCTCCTCGGTGGTTATAACCTCCATCCCCCCCC

Coding sequence (CDS) from alignment at scaffold_40:30534..32379-

>mRNA_9060 ID=mRNA_9060|Name=jgi.p|Nanoce1779_2|607955|organism=Nannochloropsis oceanica|type=CDS|length=1311bp|location=Sequence derived from alignment at scaffold_40:30534..32379- (Nannochloropsis oceanica)
ATGGAGAAGGAACGGGCTGCCTTAGCCTTGCGCCTGGCGGAAATGGAAGA
GCAGGAGCAGCGGCGTCAGACGCAATGTGCAGAAACTCCAAGAGAGAAAT
GCAAGGGAGAAATTGAGGGGTTACGTACCCAGGTCAAGTGTCTGGAGGAG
GAATGCCGAGTCGCTACAGAGCGTGCAAGTGCAGCAGAGGCGACTGCCGC
GAAGATAGCCGAAGCAGAAGTGCGATTGGCAGCACAGCTTGGGCAGGAGC
AAGAACAGTTAGCAGCGACGGTGGATAAGCAAAGTGAACACGTGCAGGCC
CTCCTAGCTCAGAGGGGTCAGTGGGACATGGAGAAAGAGGGATTGACGGT
ACGGGTGGCTGAGCTCGTTTCGTCGTTGAAAATAGAGAAGCAAGAGGCTA
AAAATGCCCTGCAATCCCTGAAGCAAGCTAAGGAGACAGTTGCGACCAAT
GCAGCTGAAGCGGCGGCGGTGCTCGTGGAGAAAGAAAGGATCATAGTGCA
ATTACAGACAATGGAGGCTGAAAAGACTTGTCTGCTTAAGGAGATCGATG
AGGAACGCCAACATTGGGTGGCGGAAGCGCAGGGTCACGAGAAGCAGCGA
TTGGAATGGACAAGCAAGAAAGAAGAGATGCTTGCACGAATGGGGGAGCT
GGAGGCCGCGCTTGAGGCTGCGAGGGAGGAAGTGAAGGAAGGCAGACGAT
GTGCGGCGGTGAAACTGGAAGAGAGGGAGGCCGCGTGGGTGATGGAGAAG
CAGGACATGGCAACGCGACTGCTGGTGGTGGAGGGGGACAAGACGCGTCT
CAAGACTACATTAGAGGAAGAAATGCAGCGACGACTAGACAAGGTGAAGG
AGGAGGAGGTTGGACTTGCGGAGTGGATGGAGGAGAGGCAGGCCCTGCTT
CTGACAGTGGCGGAGCTCAAGGGCGATGTAGCGTCATCCAGTGAAGAAGC
AGCAGCGCTACGGGATGAAGCAAGAGATGCATGGAGGTCACTGACACTAG
CCAAGGAGGAGGTGGAGGCGCATGCTGCGGCGGAGAGGGAGCTGGAACGG
AGCTTGCAGCTGATGCAGACGCAGGTCATTCACGTGGAGGGTAATGTGAG
AGCTGAACGGGAGGCAAGAGAGGAGGCGGATAGCGAGGCGGCGGGGGCGA
TGGACAGGTTGCGGGCATTGGAGGGGGAGATGGGTGAGGTGGTGGAGGAA
AGGAATACGTATCAGGAGGGGTTAGTGGATGCTAAGTTGAAAATTGCGCA
GTTGAGTGAGGAATTGGACTCGCTGTCGTTTCAGTTGCAGCACTATCGCA
TGGGGAAGTGA

Synonyms

Publications