|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 674357 |
| Track | FilteredModels2 |
| ProteinId | 674271 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_40 | supercontig | scaffold_40:29427..32378 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9059 ID=mRNA_9059|Name=jgi.p|Nanoce1779_2|674271|organism=Nannochloropsis oceanica|type=mRNA|length=2482bp
AGACTTGCGTCGGACGAGCGATTGAAACAAGTAAACATCATTACATGCGC
GGCAGAAAGCATTTTTTGAACAAACTCATGCGCAGCACACCGCCCACGCA
GACATTGGCACGGCCCTACACTATAGCAGACGCTATGATTGGTGGGCCTG
AAGGGGCATGGGGTGGAGACGACGAAGGATTGATCGACCGAGACAAGACG
ACACCCTCCTTGCTGCGCGTCTTTTGGAAGGAACACGGGCACAACAGCGA
CCTAGACTATGGCCTGGAACCCAAGCAAGTACCCGGGCAACAACTGCACT
TTTACACGTGGCCAGATGCCACCCTCAAGGAGCTGAGTCAATTGCTAAAG
GACGTAGTACCTTGCGCCCGTCGTCGTGTAGCCCGGCTGGAGTTCTCGTT
GGTGTACCCAGGGCCGGAGGGTAGGATGAGGATGCGAGCTGTGGGGTCGG
TAAGGAACAATGGGAGGACGCCGGATGATGGGAGAACGTTGCGGGATTGC
AAATTTCATATTGGCGATCATTTGGACGTTGCCATTTTGGATGAAGGAGG
AGGTGGAGGGGGGGGAGGAGGGAGAGGTTATGGTGGGGGGATAGGAGGGC
GAGGTGGTGGTGGAGGGGGATATCGTAATGGGGGTGGGGGGGGGGATGGA
GGTTATAACCACCGAGGAGAGCGAGGATTGACCGGTGGCGGTGGTTTTCG
GTACCGTAGTGGGGGTGGGGGCGATTTCTTAAGTCGATGAGTGTGTGGGG
AACGCTCATGACAAGATGTTGTGCTGCAATTTGAAGAAGCATGTCTACAA
AGAAAGAGGAAAAAAGATTGGAAGAAGATACAAAGACTCTTCATTGAGTA
TTTTGCGCATGACAGGTGTTGTATTTATGTGTTCTCAATTGGAATTTGTG
CCTACCGTCTTATCGATCTTCCTCTACCACCACTACTTATGCATCCGTAT
CCTATTGCACAGCCCAAAAAAAGAAGCAACAGCAAAATACGGAATGTTTC
TGTCTCCCTTCCCTTACTTATCTTATATCTACTACACAACTACCACCCTC
TCACTTCCCCATGCGATAGTGCTGCAACTGAAACGACAGCGAGTCCAATT
CCTCACTCAACTGCGCAATTTTCAACTTAGCATCCACTAACCCCTCCTGA
TACGTATTCCTTTCCTCCACCACCTCACCCATCTCCCCCTCCAATGCCCG
CAACCTGTCCATCGCCCCCGCCGCCTCGCTATCCGCCTCCTCTCTTGCCT
CCCGTTCAGCTCTCACATTACCCTCCACGTGAATGACCTGCGTCTGCATC
AGCTGCAAGCTCCGTTCCAGCTCCCTCTCCGCCGCAGCATGCGCCTCCAC
CTCCTCCTTGGCTAGTGTCAGTGACCTCCATGCATCTCTTGCTTCATCCC
GTAGCGCTGCTGCTTCTTCACTGGATGACGCTACATCGCCCTTGAGCTCC
GCCACTGTCAGAAGCAGGGCCTGCCTCTCCTCCATCCACTCCGCAAGTCC
AACCTCCTCCTCCTTCACCTTGTCTAGTCGTCGCTGCATTTCTTCCTCTA
ATGTAGTCTTGAGACGCGTCTTGTCCCCCTCCACCACCAGCAGTCGCGTT
GCCATGTCCTGCTTCTCCATCACCCACGCGGCCTCCCTCTCTTCCAGTTT
CACCGCCGCACATCGTCTGCCTTCCTTCACTTCCTCCCTCGCAGCCTCAA
GCGCGGCCTCCAGCTCCCCCATTCGTGCAAGCATCTCTTCTTTCTTGCTT
GTCCATTCCAATCGCTGCTTCTCGTGACCCTGCGCTTCCGCCACCCAATG
TTGGCGTTCCTCATCGATCTCCTTAAGCAGACAAGTCTTTTCAGCCTCCA
TTGTCTGTAATTGCACTATGATCCTTTCTTTCTCCACGAGCACCGCCGCC
GCTTCAGCTGCATTGGTCGCAACTGTCTCCTTAGCTTGCTTCAGGGATTG
CAGGGCATTTTTAGCCTCTTGCTTCTCTATTTTCAACGACGAAACGAGCT
CAGCCACCCGTACCGTCAATCCCTCTTTCTCCATGTCCCACTGACCCCTC
TGAGCTAGGAGGGCCTGCACGTGTTCACTTTGCTTATCCACCGTCGCTGC
TAACTGTTCTTGCTCCTGCCCAAGCTGTGCTGCCAATCGCACTTCTGCTT
CGGCTATCTTCGCGGCAGTCGCCTCTGCTGCACTTGCACGCTCTGTAGCG
ACTCGGCATTCCTCCTCCAGACACTTGACCTGGGTACGTAACCCCTCAAT
TTCTCCCTTGCATTTCTCTCTTGGAGTTTCTGCACATTGCGTCTGACGCC
GCTGCTCCTGCTCTTCCATTTCCGCCAGGCGCAAGGCTAAGGCAGCCCGT
TCCTTCTCCATTTGGGTATGACGTACTCGAGCCTCGTCCAATGTCGCCTT
CGTTTCCTTTAATTCATCTGTGAGCTCCGCTTTGTCGTGCAGCAGGGCTA
AGCGTTCTTCCTCCAATGCCTTCAGCTTGGCC back to topprotein sequence of jgi.p|Nanoce1779_2|674271 >mRNA_9059-protein ID=mRNA_9059-protein|Name=jgi.p|Nanoce1779_2|674271|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MRGRKHFLNKLMRSTPPTQTLARPYTIADAMIGGPEGAWGGDDEGLIDRD
KTTPSLLRVFWKEHGHNSDLDYGLEPKQVPGQQLHFYTWPDATLKELSQL
LKDVVPCARRRVARLEFSLVYPGPEGRMRMRAVGSVRNNGRTPDDGRTLR
DCKFHIGDHLDVAILDEGGGGGGGGGRGYGGGIGGRGGGGGGYRNGGGGG
DGGYNHRGERGLTGGGGFRYRSGGGGDFLSR* back to topmRNA from alignment at scaffold_40:29427..32378+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9059 ID=mRNA_9059|Name=jgi.p|Nanoce1779_2|674271|organism=Nannochloropsis oceanica|type=mRNA|length=2952bp|location=Sequence derived from alignment at scaffold_40:29427..32378+ (Nannochloropsis oceanica)
AGACTTGCGTCGGACGAGCGATTGAAACAAGTAAACATCATTACATGCGC
GGCAGAAAGCATTTTTTGAACAAACTCATGCGCAGCACACCGCCCACGCA
GACATTGGCACGGCGTACATACGCCCTGCTTGGCATGCCATTATCTGTGG
CTCATTTTGTGCGGGTGGTGGCTCGACAGTCGCGCAGGCCGCTACTCCAC
CTCCCCACGCCTCTCCCGCTCATCATGGCTGCTCCTTCACTTGTCGTCTC
TCAGAAAAGCAACCTCCCTCTCTCCACGAACTGCACAGCCTACACTATAG
CAGACGCTATGATTGGTGGGCCTGAAGGGGCATGGGGTGGAGACGACGAA
GGATTGATCGACCGAGACAAGGTGAGACAGTGCGCATTGAAAGAGGGGAG
GGAGGAGGGAGGGGGCAAGGAGGCTCGGAGTGAAGCCTCTAAGCCAGGCT
TTGAGCCGCATCGTATGACTGGGAGGATGCAACGGGCCCCGATGCACTTG
CAGAAGTGAGTGATCCCGGACCACATTGATATTCTGGGTGAATTTGAAGG
CCGATGCAGTGCCCAGTCCTTTCACCTTTGCCCCCTCCCCTTCACCTCAA
ACCAACCATGCGAAGCCCTTTCACCGCAATCCTCCATCCACGAATTATCT
TCCATTTACCCCTCTAGACGACACCCTCCTTGCTGCGCGTCTTTTGGAAG
GAACACGGGCACAACAGCGACCTAGACTATGGCCTGGAACCCAAGCAAGT
ACCCGGGCAACAACTGCACTTTTACACGTGGCCAGATGCCACCCTCAAGG
AGCTGAGTCAATTGCTAAAGGACGTAGTACCTTGCGCCCGTCGTCGTGTA
GCCCGGCTGGAGTTCTCGTTGGTGTACCCAGGGCCGGAGGGTAGGATGAG
GATGCGAGCTGTGGGGTCGGTAAGGAACAATGGGAGGACGCCGGATGATG
GGAGAACGTTGCGGGATTGCAAATTTCATATTGGCGATCATTTGGACGTT
GCCATTTTGGATGAAGGAGGAGGTGGAGGGGGGGGAGGAGGGAGAGGTTA
TGGTGGGGGGATAGGAGGGCGAGGTGGTGGTGGAGGGGGATATCGTAATG
GGGGTGGGGGGGGGGATGGAGGTTATAACCACCGAGGAGAGCGAGGATTG
ACCGGTGGCGGTGGTTTTCGGTACCGTAGTGGGGGTGGGGGCGATTTCTT
AAGTCGATGAGTGTGTGGGGAACGCTCATGACAAGATGTTGTGCTGCAAT
TTGAAGAAGCATGTCTACAAAGAAAGAGGAAAAAAGATTGGAAGAAGATA
CAAAGACTCTTCATTGAGTATTTTGCGCATGACAGGTGTTGTATTTATGT
GTTCTCAATTGGAATTTGTGCCTACCGTCTTATCGATCTTCCTCTACCAC
CACTACTTATGCATCCGTATCCTATTGCACAGCCCAAAAAAAGAAGCAAC
AGCAAAATACGGAATGTTTCTGTCTCCCTTCCCTTACTTATCTTATATCT
ACTACACAACTACCACCCTCTCACTTCCCCATGCGATAGTGCTGCAACTG
AAACGACAGCGAGTCCAATTCCTCACTCAACTGCGCAATTTTCAACTTAG
CATCCACTAACCCCTCCTGATACGTATTCCTTTCCTCCACCACCTCACCC
ATCTCCCCCTCCAATGCCCGCAACCTGTCCATCGCCCCCGCCGCCTCGCT
ATCCGCCTCCTCTCTTGCCTCCCGTTCAGCTCTCACATTACCCTCCACGT
GAATGACCTGCGTCTGCATCAGCTGCAAGCTCCGTTCCAGCTCCCTCTCC
GCCGCAGCATGCGCCTCCACCTCCTCCTTGGCTAGTGTCAGTGACCTCCA
TGCATCTCTTGCTTCATCCCGTAGCGCTGCTGCTTCTTCACTGGATGACG
CTACATCGCCCTTGAGCTCCGCCACTGTCAGAAGCAGGGCCTGCCTCTCC
TCCATCCACTCCGCAAGTCCAACCTCCTCCTCCTTCACCTTGTCTAGTCG
TCGCTGCATTTCTTCCTCTAATGTAGTCTTGAGACGCGTCTTGTCCCCCT
CCACCACCAGCAGTCGCGTTGCCATGTCCTGCTTCTCCATCACCCACGCG
GCCTCCCTCTCTTCCAGTTTCACCGCCGCACATCGTCTGCCTTCCTTCAC
TTCCTCCCTCGCAGCCTCAAGCGCGGCCTCCAGCTCCCCCATTCGTGCAA
GCATCTCTTCTTTCTTGCTTGTCCATTCCAATCGCTGCTTCTCGTGACCC
TGCGCTTCCGCCACCCAATGTTGGCGTTCCTCATCGATCTCCTTAAGCAG
ACAAGTCTTTTCAGCCTCCATTGTCTGTAATTGCACTATGATCCTTTCTT
TCTCCACGAGCACCGCCGCCGCTTCAGCTGCATTGGTCGCAACTGTCTCC
TTAGCTTGCTTCAGGGATTGCAGGGCATTTTTAGCCTCTTGCTTCTCTAT
TTTCAACGACGAAACGAGCTCAGCCACCCGTACCGTCAATCCCTCTTTCT
CCATGTCCCACTGACCCCTCTGAGCTAGGAGGGCCTGCACGTGTTCACTT
TGCTTATCCACCGTCGCTGCTAACTGTTCTTGCTCCTGCCCAAGCTGTGC
TGCCAATCGCACTTCTGCTTCGGCTATCTTCGCGGCAGTCGCCTCTGCTG
CACTTGCACGCTCTGTAGCGACTCGGCATTCCTCCTCCAGACACTTGACC
TGGGTACGTAACCCCTCAATTTCTCCCTTGCATTTCTCTCTTGGAGTTTC
TGCACATTGCGTCTGACGCCGCTGCTCCTGCTCTTCCATTTCCGCCAGGC
GCAAGGCTAAGGCAGCCCGTTCCTTCTCCATTTGGGTATGACGTACTCGA
GCCTCGTCCAATGTCGCCTTCGTTTCCTTTAATTCATCTGTGAGCTCCGC
TTTGTCGTGCAGCAGGGCTAAGCGTTCTTCCTCCAATGCCTTCAGCTTGG
CC back to topCoding sequence (CDS) from alignment at scaffold_40:29427..32378+ >mRNA_9059 ID=mRNA_9059|Name=jgi.p|Nanoce1779_2|674271|organism=Nannochloropsis oceanica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_40:29427..32378+ (Nannochloropsis oceanica)
ATGCGCGGCAGAAAGCATTTTTTGAACAAACTCATGCGCAGCACACCGCC
CACGCAGACATTGGCACGGCCCTACACTATAGCAGACGCTATGATTGGTG
GGCCTGAAGGGGCATGGGGTGGAGACGACGAAGGATTGATCGACCGAGAC
AAGACGACACCCTCCTTGCTGCGCGTCTTTTGGAAGGAACACGGGCACAA
CAGCGACCTAGACTATGGCCTGGAACCCAAGCAAGTACCCGGGCAACAAC
TGCACTTTTACACGTGGCCAGATGCCACCCTCAAGGAGCTGAGTCAATTG
CTAAAGGACGTAGTACCTTGCGCCCGTCGTCGTGTAGCCCGGCTGGAGTT
CTCGTTGGTGTACCCAGGGCCGGAGGGTAGGATGAGGATGCGAGCTGTGG
GGTCGGTAAGGAACAATGGGAGGACGCCGGATGATGGGAGAACGTTGCGG
GATTGCAAATTTCATATTGGCGATCATTTGGACGTTGCCATTTTGGATGA
AGGAGGAGGTGGAGGGGGGGGAGGAGGGAGAGGTTATGGTGGGGGGATAG
GAGGGCGAGGTGGTGGTGGAGGGGGATATCGTAATGGGGGTGGGGGGGGG
GATGGAGGTTATAACCACCGAGGAGAGCGAGGATTGACCGGTGGCGGTGG
TTTTCGGTACCGTAGTGGGGGTGGGGGCGATTTCTTAAGTCGATGAATGC
GCGGCAGAAAGCATTTTTTGAACAAACTCATGCGCAGCACACCGCCCACG
CAGACATTGGCACGGCCCTACACTATAGCAGACGCTATGATTGGTGGGCC
TGAAGGGGCATGGGGTGGAGACGACGAAGGATTGATCGACCGAGACAAGA
CGACACCCTCCTTGCTGCGCGTCTTTTGGAAGGAACACGGGCACAACAGC
GACCTAGACTATGGCCTGGAACCCAAGCAAGTACCCGGGCAACAACTGCA
CTTTTACACGTGGCCAGATGCCACCCTCAAGGAGCTGAGTCAATTGCTAA
AGGACGTAGTACCTTGCGCCCGTCGTCGTGTAGCCCGGCTGGAGTTCTCG
TTGGTGTACCCAGGGCCGGAGGGTAGGATGAGGATGCGAGCTGTGGGGTC
GGTAAGGAACAATGGGAGGACGCCGGATGATGGGAGAACGTTGCGGGATT
GCAAATTTCATATTGGCGATCATTTGGACGTTGCCATTTTGGATGAAGGA
GGAGGTGGAGGGGGGGGAGGAGGGAGAGGTTATGGTGGGGGGATAGGAGG
GCGAGGTGGTGGTGGAGGGGGATATCGTAATGGGGGTGGGGGGGGGGATG
GAGGTTATAACCACCGAGGAGAGCGAGGATTGACCGGTGGCGGTGGTTTT
CGGTACCGTAGTGGGGGTGGGGGCGATTTCTTAAGTCGATGAATGCGCGG
CAGAAAGCATTTTTTGAACAAACTCATGCGCAGCACACCGCCCACGCAGA
CATTGGCACGGCCCTACACTATAGCAGACGCTATGATTGGTGGGCCTGAA
GGGGCATGGGGTGGAGACGACGAAGGATTGATCGACCGAGACAAGACGAC
ACCCTCCTTGCTGCGCGTCTTTTGGAAGGAACACGGGCACAACAGCGACC
TAGACTATGGCCTGGAACCCAAGCAAGTACCCGGGCAACAACTGCACTTT
TACACGTGGCCAGATGCCACCCTCAAGGAGCTGAGTCAATTGCTAAAGGA
CGTAGTACCTTGCGCCCGTCGTCGTGTAGCCCGGCTGGAGTTCTCGTTGG
TGTACCCAGGGCCGGAGGGTAGGATGAGGATGCGAGCTGTGGGGTCGGTA
AGGAACAATGGGAGGACGCCGGATGATGGGAGAACGTTGCGGGATTGCAA
ATTTCATATTGGCGATCATTTGGACGTTGCCATTTTGGATGAAGGAGGAG
GTGGAGGGGGGGGAGGAGGGAGAGGTTATGGTGGGGGGATAGGAGGGCGA
GGTGGTGGTGGAGGGGGATATCGTAATGGGGGTGGGGGGGGGGATGGAGG
TTATAACCACCGAGGAGAGCGAGGATTGACCGGTGGCGGTGGTTTTCGGT
ACCGTAGTGGGGGTGGGGGCGATTTCTTAAGTCGATGA back to top
|