jgi.p|Nanoce1779_2|607941, mRNA_9057 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|607941
Unique Name	mRNA_9057
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1988
Alignment location	scaffold_40:23824..25811 +

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Properties


Property Name	Value
TranscriptId	608027
Track	FilteredModels2
ProteinId	607941

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:23824..25811 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607941	gene_9057	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|607941	mRNA_9057-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9057	CDS_9057	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:23824..25811+
coding sequence from alignment at scaffold_40:23824..25811+

mRNA sequence

>mRNA_9057 ID=mRNA_9057|Name=jgi.p|Nanoce1779_2|607941|organism=Nannochloropsis oceanica|type=mRNA|length=1988bp
GAAAGATTGCTTCGACGCGTTAGACCTTGGTTTTCGAGCAACATGAATCG
GTGCGTCCTTTGATTTCAGTCTTTAGGCGCAAACGTATAACCTGACATCT
CGCAAAGCAGGGCCCCTTGCTAAGGCACTCACAGGAGTTCTTCTCGAGGG
ACTCAGGGGGAAATCGTTTCTTCTCGGCCATCTGCTTCCCCACCGTACTT
TCCTCGTCGACACACATGCGCGAGCCAAAGCAGAGAAATCGACGCCAACG
TTCAGCACCTCTGGTCAATGGAAGTCCCTGGTACCAAACTTCCCGTCTCC
ACGGGCCACAATGGATAAGCAATCCACTCACCTTCGCTCCCCCTCTTTAT
CTCTATCTCTCTCACACACACACACATTCTGAAGTAGAGGTGGGCACACG
AAGCGGTGGGTAGCCAGGTAGCTAGCTAGCATGCGCCTGTTTATCTCAAT
GGGTAAGTGCATATCTTAGTTTCATCGTACCTCTCACATGTATTCAAGCG
TGCTCGCCTGCTATATGTGCGTATGGCCCTGCAAAGGCACCGGTTTCCTT
CTCTTCTTGCACCGATCGATATCACTGCGCCGCCTGCATCTCTATCACAT
CATGCACGACCCTCCTGTTCAACGGGGAGCGTCATGTATGCCCTCTCGCC
AGCTCTCTACATGGACATTTGTCCCTGTCGACGCATTGTGCGCACAAGTT
CCAATTTATTCCGTTGCTAGCTCTGTTTATGTCACTTTGCGTATAAGTCC
TAGTGTCATGAGCCGCCCCAACTCAGATCTCTCCCTTCTCATCCTCTTAC
TCTGTATAGTGTTGGCGGGCTTGAGCCTGGCCGCGGCCGGCTGCTTGGAT
TTCGTGGATCAATCCAATATCCCGACCTGCTACAAGGGCACTTTCCTTTG
CTTGGGCATGGAGGACGACAACTGCCACCTGGGGGAGAATCAACTGGTCA
TGCACGTCACGGACTTAGGGCGTGATAGAAGAACACGCCAGGCGCAGGTG
GGGCTGAAGTTGGAGAATGAGGGAATGGCTGCGAGTACTTTGGAGACGGT
GTGGGTGGAGGACGAGTATAACCTATTGAGCTCGCAGTCGGCATTTGCAC
CCTTGATCAACTCGGCGGGGGTTCGATACCATGTGATTGACAATGCGACT
GTGTTCAGTGATGCCTTGGCGCACCATGTGCCTTTTGACCAGCACTTCGT
TGCCTCTTGTGTGCCCGAACAAAAGGATTTGTCTTTGTTGCGGAGCATGC
GGAGACAGGCGCAGCCGTTGGATTGTGTGTCAAACAGCGGGGCGGACAAT
AAGCATAGCTCGGTGACGCTGGCATTTGAGACGACCTGTTCTATTGACGA
CGTGGAGCGGGCGTTAAAATTGGGGCTGATCCGGGTTGGGGTGCAAATGG
GGGGATTTGCGAAGAAGCCCGTAAGGAAGGGATTTATCACTTGCCAGGAC
ATGCTGGAAGTACTGCCGTATGACGAGGATGAGCACGATGACTCCATTGA
TAGCTTTGACTTTGATGAGGATGAGTTTTGGGAGGAGGAATGGGACGGGC
CACGGGCGGCACAGAAGAAAAGAAACCGGCCGTAGAAGGTTTGGAAGAGG
AGGAAGGGTGGAGGGATGAGAGGAAAATTGAGGGAGGGAAGTGAAGGGGT
AGAGTTTGAGAAGAAGTGTATATGTGAGTAGGAGTTGGTTAATAATGTGC
GAACAGAAGAAGAATGATATCATGTGGAGAAGGCACCAAGGAGGGTTAAG
AGAAAGGCCATGACGACGAGCAAGAGAAGAGAACAAACGTTAGCTGAGAA
GACGTGTATGTGTGCTTCTGTAGGATTTAAGGTCCGTGACGAAAGTTCTG
TCTGCCCGAGGCTGGGAGCCAAGTAGTAGGAGAAAGAATGGCAAGCAAAT
CACCAGCATTTTCCACTTTAGAAACGACAGCAACACCAACAGCATTAGTA
GCAATTATAAAAATGAGAAAAAAGGGTCGTGGTAATTA

protein sequence of jgi.p|Nanoce1779_2|607941

>mRNA_9057-protein ID=mRNA_9057-protein|Name=jgi.p|Nanoce1779_2|607941|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MYSSVLACYMCVWPCKGTGFLLFLHRSISLRRLHLYHIMHDPPVQRGASC
MPSRQLSTWTFVPVDALCAQVPIYSVASSVYVTLRISPSVMSRPNSDLSL
LILLLCIVLAGLSLAAAGCLDFVDQSNIPTCYKGTFLCLGMEDDNCHLGE
NQLVMHVTDLGRDRRTRQAQVGLKLENEGMAASTLETVWVEDEYNLLSSQ
SAFAPLINSAGVRYHVIDNATVFSDALAHHVPFDQHFVASCVPEQKDLSL
LRSMRRQAQPLDCVSNSGADNKHSSVTLAFETTCSIDDVERALKLGLIRV
GVQMGGFAKKPVRKGFITCQDMLEVLPYDEDEHDDSIDSFDFDEDEFWEE
EWDGPRAAQKKRNRP*

mRNA from alignment at scaffold_40:23824..25811+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9057 ID=mRNA_9057|Name=jgi.p|Nanoce1779_2|607941|organism=Nannochloropsis oceanica|type=mRNA|length=1988bp|location=Sequence derived from alignment at scaffold_40:23824..25811+ (Nannochloropsis oceanica)
GAAAGATTGCTTCGACGCGTTAGACCTTGGTTTTCGAGCAACATGAATCG
GTGCGTCCTTTGATTTCAGTCTTTAGGCGCAAACGTATAACCTGACATCT
CGCAAAGCAGGGCCCCTTGCTAAGGCACTCACAGGAGTTCTTCTCGAGGG
ACTCAGGGGGAAATCGTTTCTTCTCGGCCATCTGCTTCCCCACCGTACTT
TCCTCGTCGACACACATGCGCGAGCCAAAGCAGAGAAATCGACGCCAACG
TTCAGCACCTCTGGTCAATGGAAGTCCCTGGTACCAAACTTCCCGTCTCC
ACGGGCCACAATGGATAAGCAATCCACTCACCTTCGCTCCCCCTCTTTAT
CTCTATCTCTCTCACACACACACACATTCTGAAGTAGAGGTGGGCACACG
AAGCGGTGGGTAGCCAGGTAGCTAGCTAGCATGCGCCTGTTTATCTCAAT
GGGTAAGTGCATATCTTAGTTTCATCGTACCTCTCACATGTATTCAAGCG
TGCTCGCCTGCTATATGTGCGTATGGCCCTGCAAAGGCACCGGTTTCCTT
CTCTTCTTGCACCGATCGATATCACTGCGCCGCCTGCATCTCTATCACAT
CATGCACGACCCTCCTGTTCAACGGGGAGCGTCATGTATGCCCTCTCGCC
AGCTCTCTACATGGACATTTGTCCCTGTCGACGCATTGTGCGCACAAGTT
CCAATTTATTCCGTTGCTAGCTCTGTTTATGTCACTTTGCGTATAAGTCC
TAGTGTCATGAGCCGCCCCAACTCAGATCTCTCCCTTCTCATCCTCTTAC
TCTGTATAGTGTTGGCGGGCTTGAGCCTGGCCGCGGCCGGCTGCTTGGAT
TTCGTGGATCAATCCAATATCCCGACCTGCTACAAGGGCACTTTCCTTTG
CTTGGGCATGGAGGACGACAACTGCCACCTGGGGGAGAATCAACTGGTCA
TGCACGTCACGGACTTAGGGCGTGATAGAAGAACACGCCAGGCGCAGGTG
GGGCTGAAGTTGGAGAATGAGGGAATGGCTGCGAGTACTTTGGAGACGGT
GTGGGTGGAGGACGAGTATAACCTATTGAGCTCGCAGTCGGCATTTGCAC
CCTTGATCAACTCGGCGGGGGTTCGATACCATGTGATTGACAATGCGACT
GTGTTCAGTGATGCCTTGGCGCACCATGTGCCTTTTGACCAGCACTTCGT
TGCCTCTTGTGTGCCCGAACAAAAGGATTTGTCTTTGTTGCGGAGCATGC
GGAGACAGGCGCAGCCGTTGGATTGTGTGTCAAACAGCGGGGCGGACAAT
AAGCATAGCTCGGTGACGCTGGCATTTGAGACGACCTGTTCTATTGACGA
CGTGGAGCGGGCGTTAAAATTGGGGCTGATCCGGGTTGGGGTGCAAATGG
GGGGATTTGCGAAGAAGCCCGTAAGGAAGGGATTTATCACTTGCCAGGAC
ATGCTGGAAGTACTGCCGTATGACGAGGATGAGCACGATGACTCCATTGA
TAGCTTTGACTTTGATGAGGATGAGTTTTGGGAGGAGGAATGGGACGGGC
CACGGGCGGCACAGAAGAAAAGAAACCGGCCGTAGAAGGTTTGGAAGAGG
AGGAAGGGTGGAGGGATGAGAGGAAAATTGAGGGAGGGAAGTGAAGGGGT
AGAGTTTGAGAAGAAGTGTATATGTGAGTAGGAGTTGGTTAATAATGTGC
GAACAGAAGAAGAATGATATCATGTGGAGAAGGCACCAAGGAGGGTTAAG
AGAAAGGCCATGACGACGAGCAAGAGAAGAGAACAAACGTTAGCTGAGAA
GACGTGTATGTGTGCTTCTGTAGGATTTAAGGTCCGTGACGAAAGTTCTG
TCTGCCCGAGGCTGGGAGCCAAGTAGTAGGAGAAAGAATGGCAAGCAAAT
CACCAGCATTTTCCACTTTAGAAACGACAGCAACACCAACAGCATTAGTA
GCAATTATAAAAATGAGAAAAAAGGGTCGTGGTAATTA

Coding sequence (CDS) from alignment at scaffold_40:23824..25811+

>mRNA_9057 ID=mRNA_9057|Name=jgi.p|Nanoce1779_2|607941|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_40:23824..25811+ (Nannochloropsis oceanica)
ATGTATTCAAGCGTGCTCGCCTGCTATATGTGCGTATGGCCCTGCAAAGG
CACCGGTTTCCTTCTCTTCTTGCACCGATCGATATCACTGCGCCGCCTGC
ATCTCTATCACATCATGCACGACCCTCCTGTTCAACGGGGAGCGTCATGT
ATGCCCTCTCGCCAGCTCTCTACATGGACATTTGTCCCTGTCGACGCATT
GTGCGCACAAGTTCCAATTTATTCCGTTGCTAGCTCTGTTTATGTCACTT
TGCGTATAAGTCCTAGTGTCATGAGCCGCCCCAACTCAGATCTCTCCCTT
CTCATCCTCTTACTCTGTATAGTGTTGGCGGGCTTGAGCCTGGCCGCGGC
CGGCTGCTTGGATTTCGTGGATCAATCCAATATCCCGACCTGCTACAAGG
GCACTTTCCTTTGCTTGGGCATGGAGGACGACAACTGCCACCTGGGGGAG
AATCAACTGGTCATGCACGTCACGGACTTAGGGCGTGATAGAAGAACACG
CCAGGCGCAGGTGGGGCTGAAGTTGGAGAATGAGGGAATGGCTGCGAGTA
CTTTGGAGACGGTGTGGGTGGAGGACGAGTATAACCTATTGAGCTCGCAG
TCGGCATTTGCACCCTTGATCAACTCGGCGGGGGTTCGATACCATGTGAT
TGACAATGCGACTGTGTTCAGTGATGCCTTGGCGCACCATGTGCCTTTTG
ACCAGCACTTCGTTGCCTCTTGTGTGCCCGAACAAAAGGATTTGTCTTTG
TTGCGGAGCATGCGGAGACAGGCGCAGCCGTTGGATTGTGTGTCAAACAG
CGGGGCGGACAATAAGCATAGCTCGGTGACGCTGGCATTTGAGACGACCT
GTTCTATTGACGACGTGGAGCGGGCGTTAAAATTGGGGCTGATCCGGGTT
GGGGTGCAAATGGGGGGATTTGCGAAGAAGCCCGTAAGGAAGGGATTTAT
CACTTGCCAGGACATGCTGGAAGTACTGCCGTATGACGAGGATGAGCACG
ATGACTCCATTGATAGCTTTGACTTTGATGAGGATGAGTTTTGGGAGGAG
GAATGGGACGGGCCACGGGCGGCACAGAAGAAAAGAAACCGGCCGTAG

Synonyms

Publications