jgi.p|Nanoce1779_2|633651, mRNA_9056 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633651
Unique Name	mRNA_9056
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2217
Alignment location	scaffold_40:21402..23748 +

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Properties


Property Name	Value
TranscriptId	633737
Track	FilteredModels2
ProteinId	633651

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:21402..23748 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633651	gene_9056	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633651	mRNA_9056-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9056	CDS_9056	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:21402..23748+
coding sequence from alignment at scaffold_40:21402..23748+

mRNA sequence

>mRNA_9056 ID=mRNA_9056|Name=jgi.p|Nanoce1779_2|633651|organism=Nannochloropsis oceanica|type=mRNA|length=2217bp
TTGTGTGGTTGTGGGTGTGGGCGGGTTGGTGTTTCACTGAGGGGCAGGAA
GTGGGGGTGGTATCTTGATCGCGTTTCCTCGGGCCTTATTTCTCGTGAAG
GCAATATCATAGGGTGCACGAGTTCTTGAAACAAGCCAGTACAATGATGC
CTCCCTCTCGGCCATCCACATCCACCCCTTTTACACTGCCCTCTCCTCCT
CTACACCATTTCTTCCCAATCACTCCAAACTCACTCATCCGCCCTCCACT
TCACTCCCAACCCCCTAATCCATTCCTAGGCCTTCTTTTCATGCTGCCAC
TTTCCTCATTCATTACATCTACCTCCTCCTCGCTGGTTTCCCGGCACAGG
GGCCCTCCTGCCCATCGCCTGCCTCCTCCTCCACCACCACAACCTCCTCC
TCTCCAGCCTCCTTCTCCTCTTCGTCGTCGTCTCTTACCTCCTCGCCGCC
ACTCATATTCCCTTGCTGCTTTGCCCCGTCCTCCTTCTTCCTGCTACATT
CCATGCCTTCGCCGCCAGTCCCATCCCCTGGCTCAGTCAATTACCACCAA
CAACAGTCCCTTGGCTGTGCTGCGCTCCACTTCCTTCCGACAACAAGAAC
TCGATCAAGCTCGACAAGCTATGGAAGCACGGCTTGACACCCCTTCGCTG
TGCCCTTTGATTGCGGTAACGTTGCGCGAGACAGTATTGCGGTCCATCCT
TAAGGACAGGGAAAAGGCGCGCACTTGCATGTCAGGCTTGCTTCTCGACA
AGGGGAAAGCTGTGACGGCCAGACTAGAGCAGTTGCACATGGCGCAGTAT
TCGCAACAAGAGCTGCTGCAGGGGTGCGCCGATGCTTTGGCTTTCGCTCC
TTTGGTATCCCAGCTCGAAAGTTATGCTCGTGATCGCAACCTACCGGGCG
ACTGTACTTCCTACTGTTTGGATTTGGGGAATGCCAGTTGGGTACGGATA
AAGACGATGCAAACATTTGCCCTCCCTGGCTCCTCCCCGCTCTTTCAGCA
CTTTGATGGGTGCACATTGGAGGTTATACGCACACATGCATTGTCGGATC
TGAAGCTTGACACGACGGGCTCGGTCTTCTATCAATTGTTTCAGCCCGTG
GTGGCAAATCTGGTAGGTGTTTCGTTAGTTGGGCCGGGAAAGAAGGAACT
GGAGGTGGTGCTGGAGGTGGGCAGCAGCGAAGGTGGACTTTATGTCGATG
CGGGGGGGAGAGGAGGAGGAAGAGGGAAAGGAGGAGTTGGAGGTGAAGGA
GAAGGGGAGGCTTTTCGTTTGGCTTGCTATGGGTACGAAACCTTTTTCCC
TCAACATGCATACCCAGACTGTAAGGCTTTGGTCAAGACCTGGGCTTGTA
CCTTACCTCTGCCTTACCAGCGGACAGCGCATCGACACTTGGTGGGACTC
TTAATCCCTGTACGCCATCCGTTGCCAGTGACAGAACGGAGCGGGGCTTT
GAAAGTAATGGTGTCGATTACCAATTAGTTAGAGAAGGAAGGAGGGGGAA
AATCGGAGAAATTGAGGATGCCATGAGAGACGAAACATGTTCCGGAAATG
AACGATTTACTCTGATCAAAGCTGCTTTCTTGAAGTGCATGGATATTACC
CCTCCCCTTTCCCCCCGAAAAAACATTGAGACACAACAATTCTTTTTCTC
CCATTCGTACTTCTCTATTCCTTCGTTCATTCCAACTCTTTCAAGACTGT
GGAACACGCTAGACGAACGCCGAGTAAAGGCTCTTGCCAAGCGGTCAACC
TTTTTGAGTTCGTAAAGGAGATGCCCGGGTTTTTTTACCCGACCTGGATC
TTGCACTTGATCGCACTCTGCTTGCTTCCACAGGATGATCAAGAGACGCT
AACTTACAGCTGGAACATCCCGCGAGGTTTCAAGAGTGGTGTCCGTGATA
AAGCTCGTCCACACGAGACGAGCACAGAGAGCAGCTTCGGATTGGCCAAG
GGCGGCAGGTCATGGAAACACTTCTAGGGTTGCCATTAGGTTGGGGATGG
TAATACTCGATGAGTAAATAATATTTGTGGAAAAGGAGGACACCTTCAAT
GGTATATTTGCTAGGACTCCTTTTCGCATGAGACCTCAGTGTCGTTGGCA
CATGTGCAGAAGACTAGAAAGATTTGATAAAAGCTCTGAACGTACAGGAG
AGTAGATAAATCTTTTACTCACAAGAACCAAAAGGGAGAAAGGAAGCGAG
GGAGGAGGTAGGGAGGC

protein sequence of jgi.p|Nanoce1779_2|633651

>mRNA_9056-protein ID=mRNA_9056-protein|Name=jgi.p|Nanoce1779_2|633651|organism=Nannochloropsis oceanica|type=polypeptide|length=445bp
MMPPSRPSTSTPFTLPSPPLHHFFPITPNSLIRPPLHSQPPNPFLGLLFM
LPLSSFITSTSSSLVSRHRGPPAHRLPPPPPPQPPPLQPPSPLRRRLLPP
RRHSYSLAALPRPPSSCYIPCLRRQSHPLAQSITTNNSPLAVLRSTSFRQ
QELDQARQAMEARLDTPSLCPLIAVTLRETVLRSILKDREKARTCMSGLL
LDKGKAVTARLEQLHMAQYSQQELLQGCADALAFAPLVSQLESYARDRNL
PGDCTSYCLDLGNASWVRIKTMQTFALPGSSPLFQHFDGCTLEVIRTHAL
SDLKLDTTGSVFYQLFQPVVANLVGVSLVGPGKKELEVVLEVGSSEGGLY
VDAGGRGGGRGKGGVGGEGEGEAFRLACYGYETFFPQHAYPDCKALVKTW
ACTLPLPYQRTAHRHLVGLLIPVRHPLPVTERSGALKVMVSITN*

mRNA from alignment at scaffold_40:21402..23748+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9056 ID=mRNA_9056|Name=jgi.p|Nanoce1779_2|633651|organism=Nannochloropsis oceanica|type=mRNA|length=2347bp|location=Sequence derived from alignment at scaffold_40:21402..23748+ (Nannochloropsis oceanica)
TTGTGTGGTTGTGGGTGTGGGCGGGTTGGTGTTTCACTGAGGGGCAGGAA
GTGGGGGTGGTATCTTGATCGCGTTTCCTCGGGCCTTATTTCTCGTGAAG
GCAATATCATAGGGTGCACGAGTTCTTGAAACAAGCCAGTACAATGATGC
CTCCCTCTCGGCCATCCACATCCACCCCTTTTACACTGCCCTCTCCTCCT
CTACACCATTTCTTCCCAATCACTCCAAACTCACTCATCCGCCCTCCACT
TCACTCCCAACCCCCTAATCCATTCCTAGGCCTTCTTTTCATGCTGCCAC
TTTCCTCATTCATTACATCTACCTCCTCCTCGCTGGTTTCCCGGCACAGG
GGCCCTCCTGCCCATCGCCTGCCTCCTCCTCCACCACCACAACCTCCTCC
TCTCCAGCCTCCTTCTCCTCTTCGTCGTCGTCTCTTACCTCCTCGCCGCC
ACTCATATTCCCTTGCTGCTTTGCCCCGTCCTCCTTCTTCCTGCTACATT
CCATGCCTTCGCCGCCAGTCCCATCCCCTGGCTCAGTCAATTACCACCAA
CAACAGTCCCTTGGCTGTGCTGCGCTCCACTTCCTTCCGACAACAAGAAC
TCGATCAAGCTCGACAAGCTATGGAAGCACGGCTTGACACCCCTTCGCTG
TGCCCTTTGATTGCGGTAACGTTGCGCGAGACAGTATTGCGGTCCATCCT
TAAGGACAGGGAAAAGGCGCGCACTTGCATGTCAGGCTTGCTTCTCGACA
AGGGGAAAGCTGTGACGGCCAGACTAGAGCAGTTGCACATGGCGCAGTAT
TCGCAACAAGAGCTGCTGCAGGGGTGCGCCGATGCTTTGGCTTTCGCTCC
TTTGGTATCCCAGCTCGAAAGTTATGCTCGTGATCGCAACCTACCGGGCG
ACTGTACTTCCTACTGTTTGGATTTGGGGAATGCCAGTTGGGTACGGATA
AAGACGATGCAAACATTTGCCCTCCCTGGCTCCTCCCCGCTCTTTCAGCA
CTTTGATGGGTGCACATTGGAGGTTATACGCACACATGCATTGTCGGATC
TGAAGCTTGACACGACGGGCTCGGTCTTCTATCAATTGTTTCAGCCCGTG
GTGGCAAATCTGGTAGGTGTTTCGTTAGTTGGGCCGGGAAAGAAGGAACT
GGAGGTGGTGCTGGAGGTGGGCAGCAGCGAAGGTGGACTTTATGTCGATG
CGGGGGGGAGAGGAGGAGGAAGAGGGAAAGGAGGAGTTGGAGGTGAAGGA
GAAGGGGAGGCTTTTCGTTTGGCTTGCTATGGGTACGAAACCTTTTTCCC
TCAACATGCATACCCAGACTGTAAGGCTTTGGTCAAGACCTGGGCTTGTA
CCTTACCTCTGCCTTACCAGCGGACAGCGCATCGACACTTGGTGGGACTC
TTAATCCCTGTACGCCATCCGTTGCCAGTGACAGAACGGAGCGGGGCTTT
GAAAGTAATGGTGTCGATTACCAATTAGTTAGAGAAGGAAGGAGGGGGAA
AATCGGAGAAATTGAGGATGCCATGAGAGACGAAACATGTTCCGGAAATG
AACGATTTACTCTGATCAAAGCTGCTTTCTTGAAGTGCATGGATATTACC
CCTCCCCTTTCCCCCCGAAAAAACATTGAGACACAACAATTCTTTTTCTC
CCATTCGTACTTCTCTATTCCTTCGTTCATTCCAACTCTTTCAAGACTGT
GGAACACGCTAGACGAACGCCGAGTAAAGGCTCTTGCCAAGCGGTCAACC
TTTTTGAGTTCGTAAAGGAGATGCCCGGGTTTTTTTACCCGACCTGGATC
TTGCACTTGATCGCACTCTGCTTGCTTCCACAGGTGAGGCGTGAAGCGCT
GACCATGTTTTCTTTTCTTGGACCTTCTCTCGCGAAGCTGATTTGGTAGG
TTGGATGAAAGAATTGCTTACACATTTATACTGCTTACTCACACTTGCTA
TCTCTTTTTACAGGATGATCAAGAGACGCTAACTTACAGCTGGAACATCC
CGCGAGGTTTCAAGAGTGGTGTCCGTGATAAAGCTCGTCCACACGAGACG
AGCACAGAGAGCAGCTTCGGATTGGCCAAGGGCGGCAGGTCATGGAAACA
CTTCTAGGGTTGCCATTAGGTTGGGGATGGTAATACTCGATGAGTAAATA
ATATTTGTGGAAAAGGAGGACACCTTCAATGGTATATTTGCTAGGACTCC
TTTTCGCATGAGACCTCAGTGTCGTTGGCACATGTGCAGAAGACTAGAAA
GATTTGATAAAAGCTCTGAACGTACAGGAGAGTAGATAAATCTTTTACTC
ACAAGAACCAAAAGGGAGAAAGGAAGCGAGGGAGGAGGTAGGGAGGC

Coding sequence (CDS) from alignment at scaffold_40:21402..23748+

>mRNA_9056 ID=mRNA_9056|Name=jgi.p|Nanoce1779_2|633651|organism=Nannochloropsis oceanica|type=CDS|length=1335bp|location=Sequence derived from alignment at scaffold_40:21402..23748+ (Nannochloropsis oceanica)
ATGATGCCTCCCTCTCGGCCATCCACATCCACCCCTTTTACACTGCCCTC
TCCTCCTCTACACCATTTCTTCCCAATCACTCCAAACTCACTCATCCGCC
CTCCACTTCACTCCCAACCCCCTAATCCATTCCTAGGCCTTCTTTTCATG
CTGCCACTTTCCTCATTCATTACATCTACCTCCTCCTCGCTGGTTTCCCG
GCACAGGGGCCCTCCTGCCCATCGCCTGCCTCCTCCTCCACCACCACAAC
CTCCTCCTCTCCAGCCTCCTTCTCCTCTTCGTCGTCGTCTCTTACCTCCT
CGCCGCCACTCATATTCCCTTGCTGCTTTGCCCCGTCCTCCTTCTTCCTG
CTACATTCCATGCCTTCGCCGCCAGTCCCATCCCCTGGCTCAGTCAATTA
CCACCAACAACAGTCCCTTGGCTGTGCTGCGCTCCACTTCCTTCCGACAA
CAAGAACTCGATCAAGCTCGACAAGCTATGGAAGCACGGCTTGACACCCC
TTCGCTGTGCCCTTTGATTGCGGTAACGTTGCGCGAGACAGTATTGCGGT
CCATCCTTAAGGACAGGGAAAAGGCGCGCACTTGCATGTCAGGCTTGCTT
CTCGACAAGGGGAAAGCTGTGACGGCCAGACTAGAGCAGTTGCACATGGC
GCAGTATTCGCAACAAGAGCTGCTGCAGGGGTGCGCCGATGCTTTGGCTT
TCGCTCCTTTGGTATCCCAGCTCGAAAGTTATGCTCGTGATCGCAACCTA
CCGGGCGACTGTACTTCCTACTGTTTGGATTTGGGGAATGCCAGTTGGGT
ACGGATAAAGACGATGCAAACATTTGCCCTCCCTGGCTCCTCCCCGCTCT
TTCAGCACTTTGATGGGTGCACATTGGAGGTTATACGCACACATGCATTG
TCGGATCTGAAGCTTGACACGACGGGCTCGGTCTTCTATCAATTGTTTCA
GCCCGTGGTGGCAAATCTGGTAGGTGTTTCGTTAGTTGGGCCGGGAAAGA
AGGAACTGGAGGTGGTGCTGGAGGTGGGCAGCAGCGAAGGTGGACTTTAT
GTCGATGCGGGGGGGAGAGGAGGAGGAAGAGGGAAAGGAGGAGTTGGAGG
TGAAGGAGAAGGGGAGGCTTTTCGTTTGGCTTGCTATGGGTACGAAACCT
TTTTCCCTCAACATGCATACCCAGACTGTAAGGCTTTGGTCAAGACCTGG
GCTTGTACCTTACCTCTGCCTTACCAGCGGACAGCGCATCGACACTTGGT
GGGACTCTTAATCCCTGTACGCCATCCGTTGCCAGTGACAGAACGGAGCG
GGGCTTTGAAAGTAATGGTGTCGATTACCAATTAG

Synonyms

Publications