jgi.p|Nanoce1779_2|301562, mRNA_9055 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|301562
Unique NamemRNA_9055
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length657
Alignment locationscaffold_40:20199..20964 -

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Properties
Property NameValue
TranscriptId301648
TrackFilteredModels2
ProteinId301562
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:20199..20964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|301562gene_9055Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|301562mRNA_9055-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9055CDS_9055Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9055 ID=mRNA_9055|Name=jgi.p|Nanoce1779_2|301562|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
TGGATATTTCAACATTGTACGAGGGGAGCGTAGTCCTTCCTTAACTCACA
TTAGCTCCTTTCCCATCGTCAAGCTATCAATTGCACAAAGACACAAGCAA
TAACGTACAGCAGCTACATGAAGTTGAGTAGCACCACAGGCGCCAGCATC
ATCGGTATCACCTCTCCGGCGCGCATTCTTACCCTTACATCTCTGGGCCT
CTGGCTTTTAAGCTTTGGTCCTCCGAATGCTCAGGGTCACATGATGATGG
TTGCCTCACCCTTTAATGGGCTTGGCCGAGGCGACAGTCTCTCAACAAAT
AGGGCTCTCGGACGCTTCACACGTATGGTGGACGAGCTAGTGAACGAGCA
AAACCTCCTGCCACAGACCGTACTTCCTCTTTGGCGGAAGGTGATACAGC
ATCAGACGACTGACATGACCCAGCAAAATCCCGCCATTGGCATCATTACG
ACCTTCTGCGCCGATGCAATTGAGGTACGACACGTGATCAAGCCAGAACA
GGAAGAACATTATAGTCAGAATTTCAAACAGAAAGTAGGGAAGGAATTGG
TGTTGGGAAAGCTGTTGGTGGAATGAAAAAACAATGATTTTCAGGCTGGT
GGGCAGGCAGGGCAGCATAGAATTTGGATTAGTAACGCAGAAAAGGGTTT
AGGGAGA
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protein sequence of jgi.p|Nanoce1779_2|301562

>mRNA_9055-protein ID=mRNA_9055-protein|Name=jgi.p|Nanoce1779_2|301562|organism=Nannochloropsis oceanica|type=polypeptide|length=153bp
MKLSSTTGASIIGITSPARILTLTSLGLWLLSFGPPNAQGHMMMVASPFN
GLGRGDSLSTNRALGRFTRMVDELVNEQNLLPQTVLPLWRKVIQHQTTDM
TQQNPAIGIITTFCADAIEVRHVIKPEQEEHYSQNFKQKVGKELVLGKLL
VE*
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mRNA from alignment at scaffold_40:20199..20964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9055 ID=mRNA_9055|Name=jgi.p|Nanoce1779_2|301562|organism=Nannochloropsis oceanica|type=mRNA|length=766bp|location=Sequence derived from alignment at scaffold_40:20199..20964- (Nannochloropsis oceanica)
TGGATATTTCAACATTGTACGAGGGGAGCGTAGTCCTTCCTTAACTCACA
TTAGCTCCTTTCCCATCGTCAAGCTATCAATTGCACAAAGACACAAGCAA
TAACGTACAGCAGCTACATGAAGTTGAGTAGCACCACAGGCGCCAGCATC
ATCGGTATCACCTCTCCGGCGCGCATTCTTACCCTTACATCTCTGGGCCT
CTGGCTTTTAAGCTTTGGTCCTCCGAATGCTCAGGGTCACATGATGATGG
TTGCCTCACCCTTTAATGGGCTTGGCCGAGGCGACAGGTAAGCCACTCTT
TTCCCACCTTGCGCTAGAGGATACCGATTACCCCGCTGCCTCCCGTCATC
CAAATATCTTCACCTTGAGCACAGAATAGGGCTTCTAATAGTCTAGTCTC
TCAACAAATAGGGCTCTCGGACGCTTCACACGTATGGTGGACGAGCTAGT
GAACGAGCAAAACCTCCTGCCACAGACCGTACTTCCTCTTTGGCGGAAGG
TGATACAGCATCAGACGACTGACATGACCCAGCAAAATCCCGCCATTGGC
ATCATTACGACCTTCTGCGCCGATGCAATTGAGGTACGACACGTGATCAA
GCCAGAACAGGAAGAACATTATAGTCAGAATTTCAAACAGAAAGTAGGGA
AGGAATTGGTGTTGGGAAAGCTGTTGGTGGAATGAAAAAACAATGATTTT
CAGGCTGGTGGGCAGGCAGGGCAGCATAGAATTTGGATTAGTAACGCAGA
AAAGGGTTTAGGGAGA
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Coding sequence (CDS) from alignment at scaffold_40:20199..20964-

>mRNA_9055 ID=mRNA_9055|Name=jgi.p|Nanoce1779_2|301562|organism=Nannochloropsis oceanica|type=CDS|length=918bp|location=Sequence derived from alignment at scaffold_40:20199..20964- (Nannochloropsis oceanica)
TCTCTCAACAAATAGGGCTCTCGGACGCTTCACACGTATGGTGGACGAGC
TAGTGAACGAGCAAAACCTCCTGCCACAGACCGTACTTCCTCTTTGGCGG
AAGGTGATACAGCATCAGACGACTGACATGACCCAGCAAAATCCCGCCAT
TGGCATCATTACGACCTTCTGCGCCGATGCAATTGAGGTACGACACGTGA
TCAAGCCAGAACAGGAAGAACATTATAGTCAGAATTTCAAACAGAAAGTA
GGGAAGGAATTGGTGTTGGGAAAGCTGTTGGTGGAATGAATGAAGTTGAG
TAGCACCACAGGCGCCAGCATCATCGGTATCACCTCTCCGGCGCGCATTC
TTACCCTTACATCTCTGGGCCTCTGGCTTTTAAGCTTTGGTCCTCCGAAT
GCTCAGGGTCACATGATGATGGTTGCCTCACCCTTTAATGGGCTTGGCCG
AGGCGACAGTCTCTCAACAAATAGGGCTCTCGGACGCTTCACACGTATGG
TGGACGAGCTAGTGAACGAGCAAAACCTCCTGCCACAGACCGTACTTCCT
CTTTGGCGGAAGGTGATACAGCATCAGACGACTGACATGACCCAGCAAAA
TCCCGCCATTGGCATCATTACGACCTTCTGCGCCGATGCAATTGAGGTAC
GACACGTGATCAAGCCAGAACAGGAAGAACATTATAGTCAGAATTTCAAA
CAGAAAGTAGGGAAGGAATTGGTGTTGGGAAAGCTGTTGGTGGAATGAAT
GAAGTTGAGTAGCACCACAGGCGCCAGCATCATCGGTATCACCTCTCCGG
CGCGCATTCTTACCCTTACATCTCTGGGCCTCTGGCTTTTAAGCTTTGGT
CCTCCGAATGCTCAGGGTCACATGATGATGGTTGCCTCACCCTTTAATGG
GCTTGGCCGAGGCGACAG
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Synonyms
Publications