jgi.p|Nanoce1779_2|607928, mRNA_9053 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607928
Unique NamemRNA_9053
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1626
Alignment locationscaffold_40:17375..19000 -

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Properties
Property NameValue
TranscriptId608014
TrackFilteredModels2
ProteinId607928
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:17375..19000 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607928gene_9053Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607928mRNA_9053-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9053CDS_9053Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9053 ID=mRNA_9053|Name=jgi.p|Nanoce1779_2|607928|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp
AACGACAGCCAAAAGGAGCGCCATGTCGTCCGTTGCTGGGAGGGCGACCC
CTCCCACAACCAAGGCCGCTTCGACTTCCTCGCCACATCAAGAACCCTCT
TACTACTCTTTCCCGCCGCCGAAGCACGAGGGACAGAAGAAAACATGCAT
GGCCAAGGCCCGCGGCTGGATCTTCCTCGCCTTTCTCATCGGTTTTGCCC
TCCTGAGCGGAACGGTCCTACGGCAGCCCATCATGGATAGCGAGACGTGG
CTCAAGGACCAGGGAACCGTCGGACTGGCAGTCTTCGGCGTGGTAAGCTG
GGTATTTATTATGATTGGGGGAAGTGCCAATCTCATCGACCTCATTAGCG
GGTTTGTGTACGGTGGAAAGACGGGCTTCATCCTGTCCTACGTGATCAAA
CTCTTGTCGACCACCCTTGCGTACCTGGCCGGAAGGTATCTTTTGCGCGA
CATGCTAATGAACTACTTCTTTAGAGAATACGTATGGTTAGCCGCGATGG
CCAAACTCGTGGAGGAACGGCCCTGGCAAAGCAACATCCTCTTGCGCCTT
TCGATCATCCCTGCGGCCGTGAAGAGCTACGGCCTCGGTGCCATACAAGA
CCCCCCCTTGCCCTTCTTCACTTGTGCCCTCATTGTCATGGCATTACTTT
CTTGGGTGCTTGCTGACCTAGGGGCCAAGCTGAAGGATCCTGCAGATATT
TTCAAAGCCAAAAGCAAGGGAAGTCAGATCCTGGAGATCATCGGCATCGT
GTCTATTTTTTTGGTCTTGGTGTGTGGCGGCTATTATGGTCGAAAGTATG
TGCGACAGATCAATGCGGAGAAGGAGGCAGAGATGGCAGCTGTGGCTCCG
GCGACCAGCGATGATGGTAGCGGTTCGGGGACGACCCTAGAGGAAGGACC
CGAGGCGGAGGAGGTATTGTTCAGCAGCAAGGACATTGTTGAGACGCAGG
CTACGCCACCGGTGGCATGAAGTAGATCAATGGGATGGACGCCCAAAAAG
TGACAATTCAAAAAAATGAAAAGGAAACAAAAATCAAACTTGGTAGTAAG
AATGGCATGCATGTGACAATCACAAAGCAAGTTATATACTCAGAAAGAAG
GGAAACACATGTGGTATTAATTACATGTTCAGGAATCCTCAAAAAGATTG
CGATGCATGTTTGCATCTTTCATTGACTTGAAACGATTTTGCACGGTTTC
TTTGTATTTATAACGGAACTCGATTTCTACGTGGCAGGAAAAAAAACATC
AAGAAGACTGAATCAATTATAACGGACAAATCGACAGGGGGGGAAAAGGC
ATGTACATTGTTTTAATTGGAGCATTTTTGTATACGTGTCATTGTATGTG
CATGCTTTCCTCCTTCGCTTTAATTGCTCTTCCATAAAGTTAAGTGAACG
TAAGAGATGGCCGACACCGCGACCGATGGTTTAGACTCTTCAGACAGGAG
CAATGGGATGGGAGCTGGAAAGAGATATTTTGTAATAAGAGACCGCCAAG
AATGGGAAACTATACTCTTGAAAAGTTAAAAAACAAATTGGAATCACAGA
AAAACTTTAGGAACAGGGGCAATCAAGCGGGGAGAGTTTCAGAAGGAACA
TTTGGACTGCCTTTATACTCACTTGG
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protein sequence of jgi.p|Nanoce1779_2|607928

>mRNA_9053-protein ID=mRNA_9053-protein|Name=jgi.p|Nanoce1779_2|607928|organism=Nannochloropsis oceanica|type=polypeptide|length=316bp
MSSVAGRATPPTTKAASTSSPHQEPSYYSFPPPKHEGQKKTCMAKARGWI
FLAFLIGFALLSGTVLRQPIMDSETWLKDQGTVGLAVFGVVSWVFIMIGG
SANLIDLISGFVYGGKTGFILSYVIKLLSTTLAYLAGRYLLRDMLMNYFF
REYVWLAAMAKLVEERPWQSNILLRLSIIPAAVKSYGLGAIQDPPLPFFT
CALIVMALLSWVLADLGAKLKDPADIFKAKSKGSQILEIIGIVSIFLVLV
CGGYYGRKYVRQINAEKEAEMAAVAPATSDDGSGSGTTLEEGPEAEEVLF
SSKDIVETQATPPVA*
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mRNA from alignment at scaffold_40:17375..19000-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9053 ID=mRNA_9053|Name=jgi.p|Nanoce1779_2|607928|organism=Nannochloropsis oceanica|type=mRNA|length=1626bp|location=Sequence derived from alignment at scaffold_40:17375..19000- (Nannochloropsis oceanica)
AACGACAGCCAAAAGGAGCGCCATGTCGTCCGTTGCTGGGAGGGCGACCC
CTCCCACAACCAAGGCCGCTTCGACTTCCTCGCCACATCAAGAACCCTCT
TACTACTCTTTCCCGCCGCCGAAGCACGAGGGACAGAAGAAAACATGCAT
GGCCAAGGCCCGCGGCTGGATCTTCCTCGCCTTTCTCATCGGTTTTGCCC
TCCTGAGCGGAACGGTCCTACGGCAGCCCATCATGGATAGCGAGACGTGG
CTCAAGGACCAGGGAACCGTCGGACTGGCAGTCTTCGGCGTGGTAAGCTG
GGTATTTATTATGATTGGGGGAAGTGCCAATCTCATCGACCTCATTAGCG
GGTTTGTGTACGGTGGAAAGACGGGCTTCATCCTGTCCTACGTGATCAAA
CTCTTGTCGACCACCCTTGCGTACCTGGCCGGAAGGTATCTTTTGCGCGA
CATGCTAATGAACTACTTCTTTAGAGAATACGTATGGTTAGCCGCGATGG
CCAAACTCGTGGAGGAACGGCCCTGGCAAAGCAACATCCTCTTGCGCCTT
TCGATCATCCCTGCGGCCGTGAAGAGCTACGGCCTCGGTGCCATACAAGA
CCCCCCCTTGCCCTTCTTCACTTGTGCCCTCATTGTCATGGCATTACTTT
CTTGGGTGCTTGCTGACCTAGGGGCCAAGCTGAAGGATCCTGCAGATATT
TTCAAAGCCAAAAGCAAGGGAAGTCAGATCCTGGAGATCATCGGCATCGT
GTCTATTTTTTTGGTCTTGGTGTGTGGCGGCTATTATGGTCGAAAGTATG
TGCGACAGATCAATGCGGAGAAGGAGGCAGAGATGGCAGCTGTGGCTCCG
GCGACCAGCGATGATGGTAGCGGTTCGGGGACGACCCTAGAGGAAGGACC
CGAGGCGGAGGAGGTATTGTTCAGCAGCAAGGACATTGTTGAGACGCAGG
CTACGCCACCGGTGGCATGAAGTAGATCAATGGGATGGACGCCCAAAAAG
TGACAATTCAAAAAAATGAAAAGGAAACAAAAATCAAACTTGGTAGTAAG
AATGGCATGCATGTGACAATCACAAAGCAAGTTATATACTCAGAAAGAAG
GGAAACACATGTGGTATTAATTACATGTTCAGGAATCCTCAAAAAGATTG
CGATGCATGTTTGCATCTTTCATTGACTTGAAACGATTTTGCACGGTTTC
TTTGTATTTATAACGGAACTCGATTTCTACGTGGCAGGAAAAAAAACATC
AAGAAGACTGAATCAATTATAACGGACAAATCGACAGGGGGGGAAAAGGC
ATGTACATTGTTTTAATTGGAGCATTTTTGTATACGTGTCATTGTATGTG
CATGCTTTCCTCCTTCGCTTTAATTGCTCTTCCATAAAGTTAAGTGAACG
TAAGAGATGGCCGACACCGCGACCGATGGTTTAGACTCTTCAGACAGGAG
CAATGGGATGGGAGCTGGAAAGAGATATTTTGTAATAAGAGACCGCCAAG
AATGGGAAACTATACTCTTGAAAAGTTAAAAAACAAATTGGAATCACAGA
AAAACTTTAGGAACAGGGGCAATCAAGCGGGGAGAGTTTCAGAAGGAACA
TTTGGACTGCCTTTATACTCACTTGG
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Coding sequence (CDS) from alignment at scaffold_40:17375..19000-

>mRNA_9053 ID=mRNA_9053|Name=jgi.p|Nanoce1779_2|607928|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_40:17375..19000- (Nannochloropsis oceanica)
ATGTCGTCCGTTGCTGGGAGGGCGACCCCTCCCACAACCAAGGCCGCTTC
GACTTCCTCGCCACATCAAGAACCCTCTTACTACTCTTTCCCGCCGCCGA
AGCACGAGGGACAGAAGAAAACATGCATGGCCAAGGCCCGCGGCTGGATC
TTCCTCGCCTTTCTCATCGGTTTTGCCCTCCTGAGCGGAACGGTCCTACG
GCAGCCCATCATGGATAGCGAGACGTGGCTCAAGGACCAGGGAACCGTCG
GACTGGCAGTCTTCGGCGTGGTAAGCTGGGTATTTATTATGATTGGGGGA
AGTGCCAATCTCATCGACCTCATTAGCGGGTTTGTGTACGGTGGAAAGAC
GGGCTTCATCCTGTCCTACGTGATCAAACTCTTGTCGACCACCCTTGCGT
ACCTGGCCGGAAGGTATCTTTTGCGCGACATGCTAATGAACTACTTCTTT
AGAGAATACGTATGGTTAGCCGCGATGGCCAAACTCGTGGAGGAACGGCC
CTGGCAAAGCAACATCCTCTTGCGCCTTTCGATCATCCCTGCGGCCGTGA
AGAGCTACGGCCTCGGTGCCATACAAGACCCCCCCTTGCCCTTCTTCACT
TGTGCCCTCATTGTCATGGCATTACTTTCTTGGGTGCTTGCTGACCTAGG
GGCCAAGCTGAAGGATCCTGCAGATATTTTCAAAGCCAAAAGCAAGGGAA
GTCAGATCCTGGAGATCATCGGCATCGTGTCTATTTTTTTGGTCTTGGTG
TGTGGCGGCTATTATGGTCGAAAGTATGTGCGACAGATCAATGCGGAGAA
GGAGGCAGAGATGGCAGCTGTGGCTCCGGCGACCAGCGATGATGGTAGCG
GTTCGGGGACGACCCTAGAGGAAGGACCCGAGGCGGAGGAGGTATTGTTC
AGCAGCAAGGACATTGTTGAGACGCAGGCTACGCCACCGGTGGCATGA
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Synonyms
Publications