jgi.p|Nanoce1779_2|607911, mRNA_9051 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|607911
Unique NamemRNA_9051
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length630
Alignment locationscaffold_40:13250..14573 +

Link to JBrowse

Properties
Property NameValue
TranscriptId607997
TrackFilteredModels2
ProteinId607911
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:13250..14573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607911gene_9051Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|607911mRNA_9051-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9051CDS_9051Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9051 ID=mRNA_9051|Name=jgi.p|Nanoce1779_2|607911|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
GAGACCGCAGGGACATACACGCTGAATTGGTTGAAGGAGGTGAATTACGG
TGCAGTCTTTGCCTCGTCCTTGTTTCCTTACTTGTGGTTTCTGAAGAATA
TCTGGGCTGACGACTTTCCCATACCAAAGACGATGAAATGGGGCTTTGCC
TCCCTTTTGATTTTCGTCATCTCCACCATTATCGGAGGGATCGCGGCCAA
GCTCATCTACGACGAGCTCCTGGCTAACATCGACTACATTCACGGCGTGG
CTGAGTCCTTGCTAGGCGTCACCAACATAGTTCTGGCCATCGCCGCGTTT
CGAGCCTTGGAAGCTGCCAAGAAAGACAGGGGTGGGGAGCGGCCGGAAAG
ATGGACTGAGGACGGTGGAGTGGATGTGTGAAAAAAAGAAAGGGAGAGAA
GACCGAAGGGGTGTCGTTTCCTTCGACTAATTAAAAATCGAGATATTTTA
GATTGCTCTCGAGGAGAGAAAGTCAAAGTCCAGCTTTTTGTTTCTGTCTA
CGCGTTGATTTTAATTCTTGTTCATTTGGTTACGTGTGGGCGTGAAGTGC
TTGTCCTTGACCACCACGGCCGTCATATATTTCGGAACTGTCTTCATAAT
CCCTGCCGAGGTCCCGAGCCAGAGGCCCTG
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protein sequence of jgi.p|Nanoce1779_2|607911

>mRNA_9051-protein ID=mRNA_9051-protein|Name=jgi.p|Nanoce1779_2|607911|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MKWGFASLLIFVISTIIGGIAAKLIYDELLANIDYIHGVAESLLGVTNIV
LAIAAFRALEAAKKDRGGERPERWTEDGGVDV*
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mRNA from alignment at scaffold_40:13250..14573+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9051 ID=mRNA_9051|Name=jgi.p|Nanoce1779_2|607911|organism=Nannochloropsis oceanica|type=mRNA|length=1324bp|location=Sequence derived from alignment at scaffold_40:13250..14573+ (Nannochloropsis oceanica)
GAGACCGCAGGGACATACACGCTGAATTGGTTGAAGGAGGTGAATTACGG
TGCAGTCTTTGCCTCGTCCTTGTTTCCTTACTTGTGGTTTCTGAAGAATA
TCTGGGCTGACGACTTTCCCATACCAAAGGTAGGGAGGGAGGGAGGCAGG
GAGAAAGGGAGGGAGGGAGGGGGACAGGTGAAGAGATTGCGCCTTGGGTT
CTTCTTTTCTTTTGAATTGTTCACGTTTCTTGTCCGAGCAGGCCTTGTTC
TCTCTAGATCACACGCTCCCTCCACCCCTTGCCCTCCCTCCCTCCCCCCC
CTCCCTCCCTCCCTCCACGCCTTCAGACGATGAAATGGGGCTTTGCCTCC
CTTTTGATTTTCGTCATCTCCACCATTATCGGAGGGATCGCGGCCAAGCT
CATCTACGACGAGCTCCTGGCTAACATCGACTACATTCACGGCGTGGCTG
AGTCCTTGCTAGGTACGCCCTTCCTCCCTCCCTCCCTTCTTCCCTCCCTC
CCTCCCTCCCTCCCACACTCCCTCACTCCTTTATCAATCTTTGCATCATC
CCCTTCCCTCCTTGGCATTTAGCGGCTGTGATTTCATGCCATTAGTGCTA
TGGTTTCTGTGTCAACCTCTCCGGCTTATCCTAAACAGAACCCTCCAGAA
AGCGACCCGCCGTCTCAATCCCTTCGTCCTCCTCGCCTGACCTCACTTCC
CTCTTCTCTATCTCTCGTCCCATCCTTTCTCCCTCCATCCCTCTCTACTC
ACCGGCAGGCGTCACCAACATAGTTCTGGCCATCGCCGCGTTTCGAGCCT
TGGAAGCTGCCAAGAAAGACAGGGGTGGGGAGCGGCCGGAAAGATGGACT
GAGGACGGTGGAGTGGATGTGTGAAAAAAAGAAAGGGAGAGAAGACCGAA
GGGGTGTCGTTTCCTTCGACTAATTAAAAATCGAGATATTTTAGATTGCT
CTCGAGGAGAGAAAGTCAAAGTCCAGCTTTTTGTTTCTGTCTACGCGTTG
ATTTTAATTCTTGTTCATTTGGTTACGTGTGGGCGTGAAGTGCTGGGAGG
GAGGGAAAGGGGGAGGGAGCGACCGAGGGAAGCAAGGAGGGAGGGTGTGT
TGGTCGATTCAAATCTACACAAGCCATGCCCGCACATTTCAAGTGGTGCT
GTGATCCTTCTCCTCCCCATGGCTGGCTTTTCCCTCCCCCTCTCCCTCCT
TCCCTTCCTCCCCCTTTTCCTCCCTCCCTCCCTCCATCCCTACCTTGTCC
TTGACCACCACGGCCGTCATATATTTCGGAACTGTCTTCATAATCCCTGC
CGAGGTCCCGAGCCAGAGGCCCTG
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Coding sequence (CDS) from alignment at scaffold_40:13250..14573+

>mRNA_9051 ID=mRNA_9051|Name=jgi.p|Nanoce1779_2|607911|organism=Nannochloropsis oceanica|type=CDS|length=498bp|location=Sequence derived from alignment at scaffold_40:13250..14573+ (Nannochloropsis oceanica)
ATGAAATGGGGCTTTGCCTCCCTTTTGATTTTCGTCATCTCCACCATTAT
CGGAGGGATCGCGGCCAAGCTCATCTACGACGAGCTCCTGGCTAACATCG
ACTACATTCACGGCGTGGCTGAGTCCTTGCTAGGCGTCACCAACATAGTT
CTGGCCATCGCCGCGTTTCGAGCCTTGGAAGCTGCCAAGAAAGACAGGGG
TGGGGAGCGGCCGGAAAGATGGACTGAGGACGGTGGAGTGGATGTGTGAA
TGAAATGGGGCTTTGCCTCCCTTTTGATTTTCGTCATCTCCACCATTATC
GGAGGGATCGCGGCCAAGCTCATCTACGACGAGCTCCTGGCTAACATCGA
CTACATTCACGGCGTGGCTGAGTCCTTGCTAGGCGTCACCAACATAGTTC
TGGCCATCGCCGCGTTTCGAGCCTTGGAAGCTGCCAAGAAAGACAGGGGT
GGGGAGCGGCCGGAAAGATGGACTGAGGACGGTGGAGTGGATGTGTGA
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Synonyms
Publications