jgi.p|Nanoce1779_2|560447, mRNA_9049 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|560447
Unique NamemRNA_9049
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length367
Alignment locationscaffold_40:9732..10676 -

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Properties
Property NameValue
TranscriptId560533
TrackFilteredModels2
ProteinId560447
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_40supercontigscaffold_40:9732..10676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560447gene_9049Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560447mRNA_9049-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9049CDS_9049Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9049 ID=mRNA_9049|Name=jgi.p|Nanoce1779_2|560447|organism=Nannochloropsis oceanica|type=mRNA|length=367bp
CAGGTCTGTACCAGCCAGTACCGTCCGTACAATCACCAGAGGGGGAGGAG
CAGCCAGCAACGGGGCAAGCAAGAGCGTGTCCCATCTGATCTACCTAGCT
AAGACCAGCCTCTAGCCTCGTTGCTCTGCAACAATGTCTTCAGGTTTCGG
TGTCAAGGGCTCTGTGGGTCGATGTTATCCCATTTGGTCCGCATTTGAGA
AGTGCTTGGCGACTGCTCCTCATTTCAAGGAGTGCATGGATTTTCGTGAC
GACTATGTGGAGTGCCTCCATCATCGCAAAGAGTATGCACGCGTGCAGGC
TATTGAAAAGCAACGCGTGCTGATGGAGAGCGGACAAGGAGAGGAGGCGG
GGGGACATGGCGGTGGG
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protein sequence of jgi.p|Nanoce1779_2|560447

>mRNA_9049-protein ID=mRNA_9049-protein|Name=jgi.p|Nanoce1779_2|560447|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MSSGFGVKGSVGRCYPIWSAFEKCLATAPHFKECMDFRDDYVECLHHRKE
YARVQAIEKQRVLMESGQGEEAGGHGGG
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mRNA from alignment at scaffold_40:9732..10676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9049 ID=mRNA_9049|Name=jgi.p|Nanoce1779_2|560447|organism=Nannochloropsis oceanica|type=mRNA|length=945bp|location=Sequence derived from alignment at scaffold_40:9732..10676- (Nannochloropsis oceanica)
CAGGTCTGTACCAGCCAGTACCGTCCGTACAATCACCAGAGGGGGAGGAG
CAGCCAGCAACGGGGCAAGCAAGAGCGTGTCCCATCTGATCTACCTAGCT
AAGACCAGCCTCTAGCCTCGTTGCTCTGCAACAATGGTACGTACACTCGT
ATAAGGAGAGGGCGACGCCGTTCTAAGCTACTTGCTGCCGGTTGCTTTGC
ATATTCTTGACGAATTACCGCAGAGATGCAGGCGTAAGAAAGCACAGGTC
ATTCCCGACTGCCTGCTGGTGAGCCTTCCACCCTCTGGGCATTTTCCAAT
CTAATTATATCTTCCTACCCCGTAACAAAACACTACAGTCTTCAGGTTTC
GGTGTCAAGGGCTCTGTGGGTCGATGTTATCCCATTTGGTCCGCATTTGA
GAAGTGCTTGGTACGTGAGTGCAGGCCTGGGTCTCGTGTTCATTGGGGAG
TGCCTCCCAAAGAGAGTGCATCCCCACTAATGTATCTCACTTTCTTTCCC
CATTATCACTCCCATGTCTATTAGGCGACTGCTCCTCATTTCAAGGAGTG
CATGGATTTTCGTGACGACTATGTGGAGTGCCTCCATCATCGCAAAGAGG
TGGGTGCTGTCGCTTTCCTCTGCCCTCTGCCCCTGAAGAGACTCCTTCGT
CTCTTTTCTGCCACGCCCGCCAGATAGGAATGTCGAGGACAAAGTCTTCA
TACGTTTTGTGGGGAAAGGACATTTAAGCAATCTTTCCTTCCTTATCTTC
ATCTATGTGTTGCCTTGCAAGGGTCATCACTCGTCCACATAATCTCTAAT
ACCCCCCCCCCTTCATCCCTCCCTCCCTTTTCTATCTTCTTCCTTCTAAA
TCAAAAAACAGTATGCACGCGTGCAGGCTATTGAAAAGCAACGCGTGCTG
ATGGAGAGCGGACAAGGAGAGGAGGCGGGGGGACATGGCGGTGGG
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Coding sequence (CDS) from alignment at scaffold_40:9732..10676-

>mRNA_9049 ID=mRNA_9049|Name=jgi.p|Nanoce1779_2|560447|organism=Nannochloropsis oceanica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_40:9732..10676- (Nannochloropsis oceanica)
TATGCACGCGTGCAGGCTATTGAAAAGCAACGCGTGCTGATGGAGAGCGG
ACAAGGAGAGGAGGCGGGGGGACATGGCGGTGGGGCGACTGCTCCTCATT
TCAAGGAGTGCATGGATTTTCGTGACGACTATGTGGAGTGCCTCCATCAT
CGCAAAGAGTCTTCAGGTTTCGGTGTCAAGGGCTCTGTGGGTCGATGTTA
TCCCATTTGGTCCGCATTTGAGAAGTGCTTGATGTATGCACGCGTGCAGG
CTATTGAAAAGCAACGCGTGCTGATGGAGAGCGGACAAGGAGAGGAGGCG
GGGGGACATGGCGGTGGGGCGACTGCTCCTCATTTCAAGGAGTGCATGGA
TTTTCGTGACGACTATGTGGAGTGCCTCCATCATCGCAAAGAGTCTTCAG
GTTTCGGTGTCAAGGGCTCTGTGGGTCGATGTTATCCCATTTGGTCCGCA
TTTGAGAAGTGCTTGATGTATGCACGCGTGCAGGCTATTGAAAAGCAACG
CGTGCTGATGGAGAGCGGACAAGGAGAGGAGGCGGGGGGACATGGCGGTG
GGGCGACTGCTCCTCATTTCAAGGAGTGCATGGATTTTCGTGACGACTAT
GTGGAGTGCCTCCATCATCGCAAAGAGTCTTCAGGTTTCGGTGTCAAGGG
CTCTGTGGGTCGATGTTATCCCATTTGGTCCGCATTTGAGAAGTGCTTGA
TGTATGCACGCGTGCAGGCTATTGAAAAGCAACGCGTGCTGATGGAGAGC
GGACAAGGAGAGGAGGCGGGGGGACATGGCGGTGGGGCGACTGCTCCTCA
TTTCAAGGAGTGCATGGATTTTCGTGACGACTATGTGGAGTGCCTCCATC
ATCGCAAAGAGTCTTCAGGTTTCGGTGTCAAGGGCTCTGTGGGTCGATGT
TATCCCATTTGGTCCGCATTTGAGAAGTGCTTGATG
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Synonyms
Publications