jgi.p|Nanoce1779_2|633646, mRNA_9048 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633646
Unique Name	mRNA_9048
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	976
Alignment location	scaffold_40:6451..7866 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	633732
Track	FilteredModels2
ProteinId	633646

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_40	supercontig	scaffold_40:6451..7866 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633646	gene_9048	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633646	mRNA_9048-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9048	CDS_9048	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_40:6451..7866+
coding sequence from alignment at scaffold_40:6451..7866+

mRNA sequence

>mRNA_9048 ID=mRNA_9048|Name=jgi.p|Nanoce1779_2|633646|organism=Nannochloropsis oceanica|type=mRNA|length=976bp
ACAGAGCGAGGCACCGGCATAGTAAGAAAAGCGAGGAGGTGGGCGGTAAA
CCCGAGGAGACGACGATGTTGCAGGTGTGTGACAAGGCGGAGAACGACTG
CTGGAGAGCGCTTCAAAAGTTTTTCCCTGCGCAGGCCACTCGGTTGGCGC
GCTTGGACAGATTTGAGCGGGACTTGCAGTACAAATTGCTGCGTAAACGC
AGGTTGAGTACACAGCACATGGGGGGACCAGACGTTGCCCCTGCTACGCA
GACATTGCGCATATACGTCCATCACCGTTTTGTCCGCCTTATGATTTCTC
CTTCGTCGTCCTTGTCGTCAAAAGAAAGCGTAATCGGCAGCCGTAGTCGT
GGTGGTGACGGCAGCGGTAATGATGGGCGAGGAGGAAGAGATGGAGGAGG
GGGGAAAGGAGGGCCGGCGTTGGTGTTGCGAATCGAGGGAGGGGTACTGC
AAGCGGCAGGAAGTGCGGGAGCTGTAGGTAGTGATGCTAGACAATTTAGT
CCACATTATTACTTTACGGAGTTCTTTGACAGGGTGACGGTTTTGGGGCT
TCAGCAGGAGATTGCCCCTCGCAGAGGTGGTGAGGCGGTGGCCGGGGAGG
GCGGGGAAGAAGGCAATGAAGTTGAGTGGATCCGGCCTCCCTCGGCCCAC
GCCCAGGAAACAGACGGACTGGAGTTCTCCCAGCCCCTCCAAGACCAAGC
CGCCCACGGCGTCGCCTGTAAAGTCCGCATCCTCCTTGACCGCCGCCAGT
ACCTGGAGCAGCAGTACCAGGGGCGACGGCGACTGTCACCCGAGCTGAGC
AAGGTGTTGAGGCTGCGAAAGGAAGAAAGGCAAGAGACAGTGGAAGCAGC
GTTGTTGGGACTGATAGCGACCAGGCAGCTCTTCCTCCATTCCGAGCCGG
GGTGGATCCAATGCGACGACGACTTGTGGCGACTGTTTGGAAGGGGCTTG
GAGGAAGAGAGGACGGAAGAGGAAAG

protein sequence of jgi.p|Nanoce1779_2|633646

>mRNA_9048-protein ID=mRNA_9048-protein|Name=jgi.p|Nanoce1779_2|633646|organism=Nannochloropsis oceanica|type=polypeptide|length=303bp
MLQVCDKAENDCWRALQKFFPAQATRLARLDRFERDLQYKLLRKRRLSTQ
HMGGPDVAPATQTLRIYVHHRFVRLMISPSSSLSSKESVIGSRSRGGDGS
GNDGRGGRDGGGGKGGPALVLRIEGGVLQAAGSAGAVGSDARQFSPHYYF
TEFFDRVTVLGLQQEIAPRRGGEAVAGEGGEEGNEVEWIRPPSAHAQETD
GLEFSQPLQDQAAHGVACKVRILLDRRQYLEQQYQGRRRLSPELSKVLRL
RKEERQETVEAALLGLIATRQLFLHSEPGWIQCDDDLWRLFGRGLEEERT
EEE

mRNA from alignment at scaffold_40:6451..7866+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9048 ID=mRNA_9048|Name=jgi.p|Nanoce1779_2|633646|organism=Nannochloropsis oceanica|type=mRNA|length=1416bp|location=Sequence derived from alignment at scaffold_40:6451..7866+ (Nannochloropsis oceanica)
ACAGAGCGAGGCACCGGCATAGTAAGAAAAGCGAGGAGGTGGGCGGTAAA
CCCGAGGAGACGACGATGTTGCAGGTGTGTGACAAGGCGGAGAACGACTG
CTGGAGAGCGGTGAGTACTATATTTAGACAGCTATAATGGTGTTGTGTGT
GCTGCCGACCTCTCCTCCCTCCCCTTCTCAAACAACCCTCCCCGCTATGG
GCACGAACTCGCATGCACACAGCTTCAAAAGTTTTTCCCTGCGCAGGCCA
CTCGGTTGGCGCGCTTGGACAGATTTGAGCGGGACTTGCAGTACAAATTG
CTGCGTAAACGCAGGTTGAGTACACAGCACATGGGGGGACCAGACGTTGC
CCCTGCTACGCAGACATTGCGCATATACGTCCATCACCGTTTTGTCCGCC
TTATGATTTCTCCTTCGTCGTCCTTGTCGTCAAAAGAAAGCGTAATCGGC
AGCCGTAGTCGTGGTGGTGACGGCAGCGGTAATGATGGGCGAGGAGGAAG
AGATGGAGGAGGGGGGAAAGGAGGGCCGGCGTTGGTGTTGCGAATCGAGG
GAGGGGTACTGCAAGCGGCAGGAAGTGCGGGAGCTGTAGGTAGTGATGCT
AGACAATTTAGTCCACATTATTACTTTACGGAGTTCTTTGACAGGGTGAC
GGTTTTGGGGCTTCAGCAGGAGATTGCCCCTCGCAGAGGTGGTGAGGCGG
TGGCCGGGGAGGGCGGGGAAGAAGGCAATGAAGTTGAGGTAGGGGTGGCT
GAGGGCAAAAAAAGGGGGGGGGGAGGGTAGAGTTGTAAGGACACGTCGGC
TTTGCAGCTGATGGTACGTTTTTATTAAGCTTACTTTTTCATCAATTCTT
CATCCCTTTTCTTTCTCTTTTTCTTCGTCCCCCATTAGTGTATCGCACGC
GAGATTACATGCTGTATACTTTCACAAGCCCCCCTCACACTCTATTGCCT
CGCCATCCCTCTCTTGCTCTCCAAAAAACCCGCGAGAGTCATCAAATTTT
GCCCATCCCCAGGCGTCCTCTCACTCCCACTTTCCCCCCTCTTCCTCACC
CCAATCTCCATCCAAGTGGATCCGGCCTCCCTCGGCCCACGCCCAGGAAA
CAGACGGACTGGAGTTCTCCCAGCCCCTCCAAGACCAAGCCGCCCACGGC
GTCGCCTGTAAAGTCCGCATCCTCCTTGACCGCCGCCAGTACCTGGAGCA
GCAGTACCAGGGGCGACGGCGACTGTCACCCGAGCTGAGCAAGGTGTTGA
GGCTGCGAAAGGAAGAAAGGCAAGAGACAGTGGAAGCAGCGTTGTTGGGA
CTGATAGCGACCAGGCAGCTCTTCCTCCATTCCGAGCCGGGGTGGATCCA
ATGCGACGACGACTTGTGGCGACTGTTTGGAAGGGGCTTGGAGGAAGAGA
GGACGGAAGAGGAAAG

Coding sequence (CDS) from alignment at scaffold_40:6451..7866+

>mRNA_9048 ID=mRNA_9048|Name=jgi.p|Nanoce1779_2|633646|organism=Nannochloropsis oceanica|type=CDS|length=2727bp|location=Sequence derived from alignment at scaffold_40:6451..7866+ (Nannochloropsis oceanica)
ATGTTGCAGGTGTGTGACAAGGCGGAGAACGACTGCTGGAGAGCGCTTCA
AAAGTTTTTCCCTGCGCAGGCCACTCGGTTGGCGCGCTTGGACAGATTTG
AGCGGGACTTGCAGTACAAATTGCTGCGTAAACGCAGGTTGAGTACACAG
CACATGGGGGGACCAGACGTTGCCCCTGCTACGCAGACATTGCGCATATA
CGTCCATCACCGTTTTGTCCGCCTTATGATTTCTCCTTCGTCGTCCTTGT
CGTCAAAAGAAAGCGTAATCGGCAGCCGTAGTCGTGGTGGTGACGGCAGC
GGTAATGATGGGCGAGGAGGAAGAGATGGAGGAGGGGGGAAAGGAGGGCC
GGCGTTGGTGTTGCGAATCGAGGGAGGGGTACTGCAAGCGGCAGGAAGTG
CGGGAGCTGTAGGTAGTGATGCTAGACAATTTAGTCCACATTATTACTTT
ACGGAGTTCTTTGACAGGGTGACGGTTTTGGGGCTTCAGCAGGAGATTGC
CCCTCGCAGAGGTGGTGAGGCGGTGGCCGGGGAGGGCGGGGAAGAAGGCA
ATGAAGTTGAGTGGATCCGGCCTCCCTCGGCCCACGCCCAGGAAACAGAC
GGACTGGAGTTCTCCCAGCCCCTCCAAGACCAAGCCGCCCACGGCGTCGC
CTGTAAAGTCCGCATCCTCCTTGACCGCCGCCAGTACCTGGAGCAGCAGT
ACCAGGGGCGACGGCGACTGTCACCCGAGCTGAGCAAGGTGTTGAGGCTG
CGAAAGGAAGAAAGGCAAGAGACAGTGGAAGCAGCGTTGTTGGGACTGAT
AGCGACCAGGCAGCTCTTCCTCCATTCCGAGCCGGGGTGGATCCAATGCG
ACGACGACTTGTGGCGACTGTTTGGAAGGGGCTTGGAGGAAGAGAGGACG
GAAGAGGAAATGTTGCAGGTGTGTGACAAGGCGGAGAACGACTGCTGGAG
AGCGCTTCAAAAGTTTTTCCCTGCGCAGGCCACTCGGTTGGCGCGCTTGG
ACAGATTTGAGCGGGACTTGCAGTACAAATTGCTGCGTAAACGCAGGTTG
AGTACACAGCACATGGGGGGACCAGACGTTGCCCCTGCTACGCAGACATT
GCGCATATACGTCCATCACCGTTTTGTCCGCCTTATGATTTCTCCTTCGT
CGTCCTTGTCGTCAAAAGAAAGCGTAATCGGCAGCCGTAGTCGTGGTGGT
GACGGCAGCGGTAATGATGGGCGAGGAGGAAGAGATGGAGGAGGGGGGAA
AGGAGGGCCGGCGTTGGTGTTGCGAATCGAGGGAGGGGTACTGCAAGCGG
CAGGAAGTGCGGGAGCTGTAGGTAGTGATGCTAGACAATTTAGTCCACAT
TATTACTTTACGGAGTTCTTTGACAGGGTGACGGTTTTGGGGCTTCAGCA
GGAGATTGCCCCTCGCAGAGGTGGTGAGGCGGTGGCCGGGGAGGGCGGGG
AAGAAGGCAATGAAGTTGAGTGGATCCGGCCTCCCTCGGCCCACGCCCAG
GAAACAGACGGACTGGAGTTCTCCCAGCCCCTCCAAGACCAAGCCGCCCA
CGGCGTCGCCTGTAAAGTCCGCATCCTCCTTGACCGCCGCCAGTACCTGG
AGCAGCAGTACCAGGGGCGACGGCGACTGTCACCCGAGCTGAGCAAGGTG
TTGAGGCTGCGAAAGGAAGAAAGGCAAGAGACAGTGGAAGCAGCGTTGTT
GGGACTGATAGCGACCAGGCAGCTCTTCCTCCATTCCGAGCCGGGGTGGA
TCCAATGCGACGACGACTTGTGGCGACTGTTTGGAAGGGGCTTGGAGGAA
GAGAGGACGGAAGAGGAAATGTTGCAGGTGTGTGACAAGGCGGAGAACGA
CTGCTGGAGAGCGCTTCAAAAGTTTTTCCCTGCGCAGGCCACTCGGTTGG
CGCGCTTGGACAGATTTGAGCGGGACTTGCAGTACAAATTGCTGCGTAAA
CGCAGGTTGAGTACACAGCACATGGGGGGACCAGACGTTGCCCCTGCTAC
GCAGACATTGCGCATATACGTCCATCACCGTTTTGTCCGCCTTATGATTT
CTCCTTCGTCGTCCTTGTCGTCAAAAGAAAGCGTAATCGGCAGCCGTAGT
CGTGGTGGTGACGGCAGCGGTAATGATGGGCGAGGAGGAAGAGATGGAGG
AGGGGGGAAAGGAGGGCCGGCGTTGGTGTTGCGAATCGAGGGAGGGGTAC
TGCAAGCGGCAGGAAGTGCGGGAGCTGTAGGTAGTGATGCTAGACAATTT
AGTCCACATTATTACTTTACGGAGTTCTTTGACAGGGTGACGGTTTTGGG
GCTTCAGCAGGAGATTGCCCCTCGCAGAGGTGGTGAGGCGGTGGCCGGGG
AGGGCGGGGAAGAAGGCAATGAAGTTGAGTGGATCCGGCCTCCCTCGGCC
CACGCCCAGGAAACAGACGGACTGGAGTTCTCCCAGCCCCTCCAAGACCA
AGCCGCCCACGGCGTCGCCTGTAAAGTCCGCATCCTCCTTGACCGCCGCC
AGTACCTGGAGCAGCAGTACCAGGGGCGACGGCGACTGTCACCCGAGCTG
AGCAAGGTGTTGAGGCTGCGAAAGGAAGAAAGGCAAGAGACAGTGGAAGC
AGCGTTGTTGGGACTGATAGCGACCAGGCAGCTCTTCCTCCATTCCGAGC
CGGGGTGGATCCAATGCGACGACGACTTGTGGCGACTGTTTGGAAGGGGC
TTGGAGGAAGAGAGGACGGAAGAGGAA

Synonyms

Publications