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Properties
| Property Name | Value |
|---|
| TranscriptId | 674349 |
| Track | FilteredModels2 |
| ProteinId | 674263 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_40 | supercontig | scaffold_40:3646..6260 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9047 ID=mRNA_9047|Name=jgi.p|Nanoce1779_2|674263|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp
ATGCAGCAGGAGTTCTTCTGGCTGCTGATCCATGGCCTGGACAGCAGTGA
GGACCAGCCGTTATACCCGCAGGCGGCGCAGCAGTTAGACCTCCCGCACG
GGCTCGTCTCGGGACTTATCGGCACGACCGGTGGTGCTCAGAGCAGTAAC
CGGCGCGCCCAAGCAGGACAGACATCGTTGTCTGCCCAATACGCAGGAGG
AATCCTGCCGATCCCAGGTACGGGGGCAGCAGCCGCAGCCGGAACCGGTG
GCGGAGGAGGCGCCAGCACCACGGCGTCGTCCTCAGCAGCAGCAGCGGCG
GCAGCCTCGGGGGGGATGGACCTGCGGGTAAACAAGAAGTACCGTCTGAG
CAGGAAGATTGGAAGCGGTTCTTTCGGAGACATTTATTTGGGGGTGAACG
TCACAACGGGCGAGGAGGTTGCTATCAAGCTGGAGAGCGTCAAGACCAAG
CACCCGCAGTTGCTGTACGAATCCAAGATCTACCGGATTCTGTATGGTGG
GGTCGGCATCCCCAACGTGCGCTGGTTCGGGGTGGAGGGTGACTACAATG
TCATGGTCCTGGACCTGCTCGGGCCCTCACTGGAGGACCTGTTCAATTAC
TGCGGGCGTCGGTTCAACCTCAAGACCGTGCTCCTCCTCGCCCAGCAGCT
GCTCTCCCGACTGGAGTTTCTGCATACCAAGAGCTTCATCCACAGGGACG
TGAAGCCCGACAATTTCCTGATCGGACTGGGCCGGCACCATAACACTGTC
TACATCATCGACTTTGGCCTGGCCAAGCGCTACCGAGACCCCCGCACGCA
CAAGCACATCGCCTACCGAGAACACAAGAACCTGACCGGCACGGCCCGCT
ACGCCTCCATCAACACTCACATCGGTATCGAGCAGTCTCGTCGCGACGAC
CTGGAATCGCTAGGCTACGTGATCATGTACTTTTTGCGTGGCTCTCTCCC
CTGGCAAGGCCTCAAGGCCAACACCAAGAAGCAGAAGTACGAGCGCATCC
TGGAGCGCAAGATGGCCACATCGCCCGAGCAGCTGTGCAAGGGTTTCCCC
TCTGAATTTCGCTCTTACTTCGAGTACTGTCGAGCCCTGCGCTTTGATGA
CCGGCCCGACTACTCCTATTTAAAGCGACTCTTTTCCGAGCTCTTCCTAA
GGAAGGCCTTCACGGACGACGCCATGTTCGATTGGACCATCCTCAACATG
CAGCAGGAGCGCAGCCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGA
GCAGCAGCAGCAGGCGCGGGGGGAAATGGGAGAAGGAGGGAAAGCGGAAG
GCGCAACCGCTTTAGGGGAGGGAGGAGGGAAGGAAGGACTATCGGCAGGA
GAGGACGGGAAGGCAAGGGGAAAGGAAGGGGGGATAGTCCGACTAGATGG
CAAGGGAGGAGGAGGGGAGGAGGAAGTGCAGGATGGAGGATTAGCTGCGG
GGATGGGACGGCGGCGGGGCATCTTGTCAAGACAAGACGATCCCACTTAG
AGGCATGCTAGAGTTTGGTCGCGCTACCTGTCGTCTCGGCGTGTGGAAAG
AAAACATGTGTGTGATTCCAGTGCAGGTAGAAAAAAGGGAAGGTAAGAGA
GGGTAGCAACTGGCAGCAGCAGATATTGCAATAACAGCCGTAGTTGCATC
GGGAAAAGCAGTACCAGCAGCAACCAGGCTCGAGTGGCGCTAGATAGAAG
AAACATACGTCCAGAGGGAGGATGAGGGAGGGAGCGAGTTGAGGCTAGGA
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGT back to topprotein sequence of jgi.p|Nanoce1779_2|674263 >mRNA_9047-protein ID=mRNA_9047-protein|Name=jgi.p|Nanoce1779_2|674263|organism=Nannochloropsis oceanica|type=polypeptide|length=500bp
MQQEFFWLLIHGLDSSEDQPLYPQAAQQLDLPHGLVSGLIGTTGGAQSSN
RRAQAGQTSLSAQYAGGILPIPGTGAAAAAGTGGGGGASTTASSSAAAAA
AASGGMDLRVNKKYRLSRKIGSGSFGDIYLGVNVTTGEEVAIKLESVKTK
HPQLLYESKIYRILYGGVGIPNVRWFGVEGDYNVMVLDLLGPSLEDLFNY
CGRRFNLKTVLLLAQQLLSRLEFLHTKSFIHRDVKPDNFLIGLGRHHNTV
YIIDFGLAKRYRDPRTHKHIAYREHKNLTGTARYASINTHIGIEQSRRDD
LESLGYVIMYFLRGSLPWQGLKANTKKQKYERILERKMATSPEQLCKGFP
SEFRSYFEYCRALRFDDRPDYSYLKRLFSELFLRKAFTDDAMFDWTILNM
QQERSRQQQQQQQQQEEQQQQARGEMGEGGKAEGATALGEGGGKEGLSAG
EDGKARGKEGGIVRLDGKGGGGEEEVQDGGLAAGMGRRRGILSRQDDPT* back to topmRNA from alignment at scaffold_40:3646..6260- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9047 ID=mRNA_9047|Name=jgi.p|Nanoce1779_2|674263|organism=Nannochloropsis oceanica|type=mRNA|length=2615bp|location=Sequence derived from alignment at scaffold_40:3646..6260- (Nannochloropsis oceanica)
ATGCAGCAGGAGTTCTTCTGGCTGCTGATCCATGGCCTGGACAGCAGTGG
TAATATCGGCGCTTGGATGTCCTCCAAACAAACAATACGCTTTGCCGGAG
AGAATATGGCGTGTTAGGTAATTGTTAGACTAGGCGGTGCATGATTACAC
GCTGTCTTTGCGGCTTTCTGTCCCCAAAATCTATCATCATCCTCATACCC
TCGTACAACCACACCAAACACACCACAAACAGGTGTCCCGCCCTCATCCA
CCCACCTGCCTTGCATCCAAACACCTGGATGTCTGCGGGATGACTTGGTG
GACATTGTCGACTGCCGGATGGAACCGAGGCTGAGGGGGCCAAATCAAAG
AAAAATGGTCTGTTGCTACTTCTTCTTTGGGATGTGCCGCTGGATGTGCA
GACCCTTGTTACGCCCCTCCTGCCGCCTCCACAACAACCTTCCATATATC
GAGAATGGGGAATGATCGAGATGCATGTTTGCGTATAGAGCTCGAGGCAG
GCGGCCGCGGACCGTAGTCACGGTTGACGAATGAGAGAAGACGCCGCCGG
GCTTCTGACCTCACATACGGACAATTGACACAGCAGCCTCTCACCCATGC
CTAATCTCGCACCACTAACAAAATACTAACAGGGAGCCCTTTTTAGCTGG
ATCAAAGCAAGGGTTAGAACAGCTCGGTCCACGTGCGAGAAGAGTGGAGG
AAGAGGAGGAGGAGGCAGTCTCGACCACCATCCTGCCAAAGGGAAACCAC
GCAGCAGTGCTGCCGTCTGTCTGCCTTCGCACTCACGCTAGCGCCTCCCG
CCGGCTGATATCTCGAGCCGTTTTTTCCTCTTTTTGCCGCCGCGCCCGCA
ACCATAGAGGACCAGCCGTTATACCCGCAGGCGGCGCAGCAGTTAGACCT
CCCGCACGGGCTCGTCTCGGGACTTATCGGCACGACCGGTGGTGCTCAGA
GCAGTAACCGGCGCGCCCAAGCAGGACAGACATCGTTGTCTGCCCAATAC
GCAGGAGGAATCCTGCCGATCCCAGGTACGGGGGCAGCAGCCGCAGCCGG
AACCGGTGGCGGAGGAGGCGCCAGCACCACGGCGTCGTCCTCAGCAGCAG
CAGCGGCGGCAGCCTCGGGGGGGATGGACCTGCGGGTAAACAAGAAGTAC
CGTCTGAGCAGGAAGATTGGAAGCGGTTCTTTCGGAGACATTTATTTGGG
GGTGAACGTCACAACGGGCGAGGAGGTTGCTATCAAGCTGGAGAGCGTCA
AGACCAAGCACCCGCAGTTGCTGTACGAATCCAAGATCTACCGGATTCTG
TATGGTGGGGTCGGCATCCCCAACGTGCGCTGGTTCGGGGTGGAGGGTGA
CTACAATGTCATGGTCCTGGACCTGCTCGGGCCCTCACTGGAGGACCTGT
TCAATTACTGCGGGCGTCGGTTCAACCTCAAGACCGTGCTCCTCCTCGCC
CAGCAGCTGCTCTCCCGACTGGAGTTTCTGCATACCAAGAGCTTCATCCA
CAGGGACGTGAAGCCCGACAATTTCCTGATCGGACTGGGCCGGCACCATA
ACACTGTCTACATCATCGACTTTGGCCTGGCCAAGCGCTACCGAGACCCC
CGCACGCACAAGCACATCGCCTACCGAGAACACAAGAACCTGACCGGCAC
GGCCCGCTACGCCTCCATCAACACTCACATCGGTATCGAGCAGTCTCGTC
GCGACGACCTGGAATCGCTAGGCTACGTGATCATGTACTTTTTGCGTGGC
TCTCTCCCCTGGCAAGGCCTCAAGGCCAACACCAAGAAGCAGAAGTACGA
GCGCATCCTGGAGCGCAAGATGGCCACATCGCCCGAGCAGCTGTGCAAGG
GTTTCCCCTCTGAATTTCGCTCTTACTTCGAGTACTGTCGAGCCCTGCGC
TTTGATGACCGGCCCGACTACTCCTATTTAAAGCGACTCTTTTCCGAGCT
CTTCCTAAGGAAGGCCTTCACGGACGACGCCATGTTCGATTGGACCATCC
TCAACATGCAGCAGGAGCGCAGCCGCCAGCAGCAGCAGCAGCAGCAGCAG
CAGGAGGAGCAGCAGCAGCAGGCGCGGGGGGAAATGGGAGAAGGAGGGAA
AGCGGAAGGCGCAACCGCTTTAGGGGAGGGAGGAGGGAAGGAAGGACTAT
CGGCAGGAGAGGACGGGAAGGCAAGGGGAAAGGAAGGGGGGATAGTCCGA
CTAGATGGCAAGGGAGGAGGAGGGGAGGAGGAAGTGCAGGATGGAGGATT
AGCTGCGGGGATGGGACGGCGGCGGGGCATCTTGTCAAGACAAGACGATC
CCACTTAGAGGCATGCTAGAGTTTGGTCGCGCTACCTGTCGTCTCGGCGT
GTGGAAAGAAAACATGTGTGTGATTCCAGTGCAGGTAGAAAAAAGGGAAG
GTAAGAGAGGGTAGCAACTGGCAGCAGCAGATATTGCAATAACAGCCGTA
GTTGCATCGGGAAAAGCAGTACCAGCAGCAACCAGGCTCGAGTGGCGCTA
GATAGAAGAAACATACGTCCAGAGGGAGGATGAGGGAGGGAGCGAGTTGA
GGCTAGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGT back to topCoding sequence (CDS) from alignment at scaffold_40:3646..6260- >mRNA_9047 ID=mRNA_9047|Name=jgi.p|Nanoce1779_2|674263|organism=Nannochloropsis oceanica|type=CDS|length=3000bp|location=Sequence derived from alignment at scaffold_40:3646..6260- (Nannochloropsis oceanica)
AGGACCAGCCGTTATACCCGCAGGCGGCGCAGCAGTTAGACCTCCCGCAC
GGGCTCGTCTCGGGACTTATCGGCACGACCGGTGGTGCTCAGAGCAGTAA
CCGGCGCGCCCAAGCAGGACAGACATCGTTGTCTGCCCAATACGCAGGAG
GAATCCTGCCGATCCCAGGTACGGGGGCAGCAGCCGCAGCCGGAACCGGT
GGCGGAGGAGGCGCCAGCACCACGGCGTCGTCCTCAGCAGCAGCAGCGGC
GGCAGCCTCGGGGGGGATGGACCTGCGGGTAAACAAGAAGTACCGTCTGA
GCAGGAAGATTGGAAGCGGTTCTTTCGGAGACATTTATTTGGGGGTGAAC
GTCACAACGGGCGAGGAGGTTGCTATCAAGCTGGAGAGCGTCAAGACCAA
GCACCCGCAGTTGCTGTACGAATCCAAGATCTACCGGATTCTGTATGGTG
GGGTCGGCATCCCCAACGTGCGCTGGTTCGGGGTGGAGGGTGACTACAAT
GTCATGGTCCTGGACCTGCTCGGGCCCTCACTGGAGGACCTGTTCAATTA
CTGCGGGCGTCGGTTCAACCTCAAGACCGTGCTCCTCCTCGCCCAGCAGC
TGCTCTCCCGACTGGAGTTTCTGCATACCAAGAGCTTCATCCACAGGGAC
GTGAAGCCCGACAATTTCCTGATCGGACTGGGCCGGCACCATAACACTGT
CTACATCATCGACTTTGGCCTGGCCAAGCGCTACCGAGACCCCCGCACGC
ACAAGCACATCGCCTACCGAGAACACAAGAACCTGACCGGCACGGCCCGC
TACGCCTCCATCAACACTCACATCGGTATCGAGCAGTCTCGTCGCGACGA
CCTGGAATCGCTAGGCTACGTGATCATGTACTTTTTGCGTGGCTCTCTCC
CCTGGCAAGGCCTCAAGGCCAACACCAAGAAGCAGAAGTACGAGCGCATC
CTGGAGCGCAAGATGGCCACATCGCCCGAGCAGCTGTGCAAGGGTTTCCC
CTCTGAATTTCGCTCTTACTTCGAGTACTGTCGAGCCCTGCGCTTTGATG
ACCGGCCCGACTACTCCTATTTAAAGCGACTCTTTTCCGAGCTCTTCCTA
AGGAAGGCCTTCACGGACGACGCCATGTTCGATTGGACCATCCTCAACAT
GCAGCAGGAGCGCAGCCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGG
AGCAGCAGCAGCAGGCGCGGGGGGAAATGGGAGAAGGAGGGAAAGCGGAA
GGCGCAACCGCTTTAGGGGAGGGAGGAGGGAAGGAAGGACTATCGGCAGG
AGAGGACGGGAAGGCAAGGGGAAAGGAAGGGGGGATAGTCCGACTAGATG
GCAAGGGAGGAGGAGGGGAGGAGGAAGTGCAGGATGGAGGATTAGCTGCG
GGGATGGGACGGCGGCGGGGCATCTTGTCAAGACAAGACGATCCCACTTA
GATGCAGCAGGAGTTCTTCTGGCTGCTGATCCATGGCCTGGACAGCAGTG
AGGACCAGCCGTTATACCCGCAGGCGGCGCAGCAGTTAGACCTCCCGCAC
GGGCTCGTCTCGGGACTTATCGGCACGACCGGTGGTGCTCAGAGCAGTAA
CCGGCGCGCCCAAGCAGGACAGACATCGTTGTCTGCCCAATACGCAGGAG
GAATCCTGCCGATCCCAGGTACGGGGGCAGCAGCCGCAGCCGGAACCGGT
GGCGGAGGAGGCGCCAGCACCACGGCGTCGTCCTCAGCAGCAGCAGCGGC
GGCAGCCTCGGGGGGGATGGACCTGCGGGTAAACAAGAAGTACCGTCTGA
GCAGGAAGATTGGAAGCGGTTCTTTCGGAGACATTTATTTGGGGGTGAAC
GTCACAACGGGCGAGGAGGTTGCTATCAAGCTGGAGAGCGTCAAGACCAA
GCACCCGCAGTTGCTGTACGAATCCAAGATCTACCGGATTCTGTATGGTG
GGGTCGGCATCCCCAACGTGCGCTGGTTCGGGGTGGAGGGTGACTACAAT
GTCATGGTCCTGGACCTGCTCGGGCCCTCACTGGAGGACCTGTTCAATTA
CTGCGGGCGTCGGTTCAACCTCAAGACCGTGCTCCTCCTCGCCCAGCAGC
TGCTCTCCCGACTGGAGTTTCTGCATACCAAGAGCTTCATCCACAGGGAC
GTGAAGCCCGACAATTTCCTGATCGGACTGGGCCGGCACCATAACACTGT
CTACATCATCGACTTTGGCCTGGCCAAGCGCTACCGAGACCCCCGCACGC
ACAAGCACATCGCCTACCGAGAACACAAGAACCTGACCGGCACGGCCCGC
TACGCCTCCATCAACACTCACATCGGTATCGAGCAGTCTCGTCGCGACGA
CCTGGAATCGCTAGGCTACGTGATCATGTACTTTTTGCGTGGCTCTCTCC
CCTGGCAAGGCCTCAAGGCCAACACCAAGAAGCAGAAGTACGAGCGCATC
CTGGAGCGCAAGATGGCCACATCGCCCGAGCAGCTGTGCAAGGGTTTCCC
CTCTGAATTTCGCTCTTACTTCGAGTACTGTCGAGCCCTGCGCTTTGATG
ACCGGCCCGACTACTCCTATTTAAAGCGACTCTTTTCCGAGCTCTTCCTA
AGGAAGGCCTTCACGGACGACGCCATGTTCGATTGGACCATCCTCAACAT
GCAGCAGGAGCGCAGCCGCCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGG
AGCAGCAGCAGCAGGCGCGGGGGGAAATGGGAGAAGGAGGGAAAGCGGAA
GGCGCAACCGCTTTAGGGGAGGGAGGAGGGAAGGAAGGACTATCGGCAGG
AGAGGACGGGAAGGCAAGGGGAAAGGAAGGGGGGATAGTCCGACTAGATG
GCAAGGGAGGAGGAGGGGAGGAGGAAGTGCAGGATGGAGGATTAGCTGCG
GGGATGGGACGGCGGCGGGGCATCTTGTCAAGACAAGACGATCCCACTTA
GATGCAGCAGGAGTTCTTCTGGCTGCTGATCCATGGCCTGGACAGCAGTG back to top
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