jgi.p|Nanoce1779_2|622354, mRNA_900 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622354
Unique Name	mRNA_900
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1575
Alignment location	scaffold_2:694565..696139 +

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Properties


Property Name	Value
TranscriptId	622440
Track	FilteredModels2
ProteinId	622354

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:694565..696139 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622354	gene_900	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622354	mRNA_900-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_900	CDS_900	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:694565..696139+
coding sequence from alignment at scaffold_2:694565..696139+

mRNA sequence

>mRNA_900 ID=mRNA_900|Name=jgi.p|Nanoce1779_2|622354|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
ATGTCGTCGTTCGTACGGCCTATGCTGACCGATATGTACCAAATTACAAT
GGTCTTCGCGTACTGGAAGCAAAAGCGGCACCAGGACAGGGCCATCTTTG
AGCTCTTTTTCCGGAAGACACCCTTTAAGGGAGAGTTTGCCATTATGGCC
GGCATTGACGAAGTACTCAAGTACTTGGCCCACTTTCGCTTCTCCGAGGA
GGAGCTGATTTATTTACGAAAGCAAATTCCGCATGCCGAGGAGGATTTTT
TTGTCTGGTTGGGACAATTAGATTGCTCAGCCGTCAAAGTATACGCCCTG
CCCGACGGTACCACATGCTTTGGTATAGAGCCCCTGATCCGCGTGGAAGG
TCCCTTGGCGATTGGACAGCTTTTGGAGACGACGCTCCTAAATCTGGTCA
ACTACCCTTCCCTCATCGCCACCAACGCCGCCCGTCACCGCCTGGCCGTG
GGGCCGGACAAGGTGCTGATTGAGTTTGGATTGCGAAGGGCCCAGGGTCC
GGACGGTGCCATGTCTGCGGCAAAGTACTCCTATCTCGGGGGATTCGATG
GGACGAGCAATGTGCTTGCGGGCCGTTTGCTCAGCATCGCCATCAGTGGC
ACCCACGCTCATGCGTATGTGCAATCGTACGTGAGCCTGGATGACCTCCA
GAATCCCTTTTTAGACGATCAAAATCTGGTAGAGAAAGCGTTGGCATACC
GGTCCACCTTGGGCTTTTCCGATAGTAATTTGGGGGAGTTTGCGGCCTTT
GTCGCTTATGCTCAGTCATGGCCCGATAACTTTCTGTGTTTGGTCGATAC
CTACGATACGCTCAATTCGGGGATACCCAATTTTCTGAGTGTTGCTTTGG
CGTTGCATGATTTGGGGTATGCGCCGGTGGGGGTACGGTTGGACTCGGGA
GACTTGGCTTACTTGTCAAAGCGGATCAGGGCGTGGTTTACCAGGGTGGC
GTCGACTCACGGACGGCCGACGTTTGAAAAGCTTCGGATTGTGGCGAGTA
ATAATATCAATGAAGATGTGTTGTACGCCTTGAGTAAGCAGGGACATTCC
ATCGATGCCTTCGGCGTGGGAACTCACTTGGTCACGTGTCAGGCACAGCC
GGCCTTGGGATGTGTTTATAAGCTGGTGGAGATCTGCGGGAAACCACGGA
TCAAGATCTCTAATGAAGTAGAGAAAGTTACCTTGCCGAGTCGGAAGGAC
CTCTATCGCTTTTTCAACGAATCAGGCGTGGCCGTGGTGGATTTCATGAC
TAAAAACGGTGAAGCCGCGCCAAAACCAGGGCAGCGCCGATTGTGTCGGC
ATCCGTTCGACTCGAAGAAGCGTGCTTATGTCACACCCTCCACCGTCGAA
CCGTTGCTTAAGCTGGTTTGGGACGGACAGGCGGGTGGCATTCAACCAGG
GGCCTTGCGGACATTGGGAGAAAGTAGAGAGTTCGTGATGGATCAGTTGA
AGGGCATCCGAGAGGATGTTTTGAGGCACATTAATCCTACGCCGTACAAG
GTAAGCGTTAGTGAGGAGCTCCATGCGTTGTTGCACCAGCTTTGGGAGAT
GAATGCACCGGTGGGTCAGCTATGA

protein sequence of jgi.p|Nanoce1779_2|622354

>mRNA_900-protein ID=mRNA_900-protein|Name=jgi.p|Nanoce1779_2|622354|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MSSFVRPMLTDMYQITMVFAYWKQKRHQDRAIFELFFRKTPFKGEFAIMA
GIDEVLKYLAHFRFSEEELIYLRKQIPHAEEDFFVWLGQLDCSAVKVYAL
PDGTTCFGIEPLIRVEGPLAIGQLLETTLLNLVNYPSLIATNAARHRLAV
GPDKVLIEFGLRRAQGPDGAMSAAKYSYLGGFDGTSNVLAGRLLSIAISG
THAHAYVQSYVSLDDLQNPFLDDQNLVEKALAYRSTLGFSDSNLGEFAAF
VAYAQSWPDNFLCLVDTYDTLNSGIPNFLSVALALHDLGYAPVGVRLDSG
DLAYLSKRIRAWFTRVASTHGRPTFEKLRIVASNNINEDVLYALSKQGHS
IDAFGVGTHLVTCQAQPALGCVYKLVEICGKPRIKISNEVEKVTLPSRKD
LYRFFNESGVAVVDFMTKNGEAAPKPGQRRLCRHPFDSKKRAYVTPSTVE
PLLKLVWDGQAGGIQPGALRTLGESREFVMDQLKGIREDVLRHINPTPYK
VSVSEELHALLHQLWEMNAPVGQL*

mRNA from alignment at scaffold_2:694565..696139+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_900 ID=mRNA_900|Name=jgi.p|Nanoce1779_2|622354|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp|location=Sequence derived from alignment at scaffold_2:694565..696139+ (Nannochloropsis oceanica)
ATGTCGTCGTTCGTACGGCCTATGCTGACCGATATGTACCAAATTACAAT
GGTCTTCGCGTACTGGAAGCAAAAGCGGCACCAGGACAGGGCCATCTTTG
AGCTCTTTTTCCGGAAGACACCCTTTAAGGGAGAGTTTGCCATTATGGCC
GGCATTGACGAAGTACTCAAGTACTTGGCCCACTTTCGCTTCTCCGAGGA
GGAGCTGATTTATTTACGAAAGCAAATTCCGCATGCCGAGGAGGATTTTT
TTGTCTGGTTGGGACAATTAGATTGCTCAGCCGTCAAAGTATACGCCCTG
CCCGACGGTACCACATGCTTTGGTATAGAGCCCCTGATCCGCGTGGAAGG
TCCCTTGGCGATTGGACAGCTTTTGGAGACGACGCTCCTAAATCTGGTCA
ACTACCCTTCCCTCATCGCCACCAACGCCGCCCGTCACCGCCTGGCCGTG
GGGCCGGACAAGGTGCTGATTGAGTTTGGATTGCGAAGGGCCCAGGGTCC
GGACGGTGCCATGTCTGCGGCAAAGTACTCCTATCTCGGGGGATTCGATG
GGACGAGCAATGTGCTTGCGGGCCGTTTGCTCAGCATCGCCATCAGTGGC
ACCCACGCTCATGCGTATGTGCAATCGTACGTGAGCCTGGATGACCTCCA
GAATCCCTTTTTAGACGATCAAAATCTGGTAGAGAAAGCGTTGGCATACC
GGTCCACCTTGGGCTTTTCCGATAGTAATTTGGGGGAGTTTGCGGCCTTT
GTCGCTTATGCTCAGTCATGGCCCGATAACTTTCTGTGTTTGGTCGATAC
CTACGATACGCTCAATTCGGGGATACCCAATTTTCTGAGTGTTGCTTTGG
CGTTGCATGATTTGGGGTATGCGCCGGTGGGGGTACGGTTGGACTCGGGA
GACTTGGCTTACTTGTCAAAGCGGATCAGGGCGTGGTTTACCAGGGTGGC
GTCGACTCACGGACGGCCGACGTTTGAAAAGCTTCGGATTGTGGCGAGTA
ATAATATCAATGAAGATGTGTTGTACGCCTTGAGTAAGCAGGGACATTCC
ATCGATGCCTTCGGCGTGGGAACTCACTTGGTCACGTGTCAGGCACAGCC
GGCCTTGGGATGTGTTTATAAGCTGGTGGAGATCTGCGGGAAACCACGGA
TCAAGATCTCTAATGAAGTAGAGAAAGTTACCTTGCCGAGTCGGAAGGAC
CTCTATCGCTTTTTCAACGAATCAGGCGTGGCCGTGGTGGATTTCATGAC
TAAAAACGGTGAAGCCGCGCCAAAACCAGGGCAGCGCCGATTGTGTCGGC
ATCCGTTCGACTCGAAGAAGCGTGCTTATGTCACACCCTCCACCGTCGAA
CCGTTGCTTAAGCTGGTTTGGGACGGACAGGCGGGTGGCATTCAACCAGG
GGCCTTGCGGACATTGGGAGAAAGTAGAGAGTTCGTGATGGATCAGTTGA
AGGGCATCCGAGAGGATGTTTTGAGGCACATTAATCCTACGCCGTACAAG
GTAAGCGTTAGTGAGGAGCTCCATGCGTTGTTGCACCAGCTTTGGGAGAT
GAATGCACCGGTGGGTCAGCTATGA

Coding sequence (CDS) from alignment at scaffold_2:694565..696139+

>mRNA_900 ID=mRNA_900|Name=jgi.p|Nanoce1779_2|622354|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at scaffold_2:694565..696139+ (Nannochloropsis oceanica)
ATGTCGTCGTTCGTACGGCCTATGCTGACCGATATGTACCAAATTACAAT
GGTCTTCGCGTACTGGAAGCAAAAGCGGCACCAGGACAGGGCCATCTTTG
AGCTCTTTTTCCGGAAGACACCCTTTAAGGGAGAGTTTGCCATTATGGCC
GGCATTGACGAAGTACTCAAGTACTTGGCCCACTTTCGCTTCTCCGAGGA
GGAGCTGATTTATTTACGAAAGCAAATTCCGCATGCCGAGGAGGATTTTT
TTGTCTGGTTGGGACAATTAGATTGCTCAGCCGTCAAAGTATACGCCCTG
CCCGACGGTACCACATGCTTTGGTATAGAGCCCCTGATCCGCGTGGAAGG
TCCCTTGGCGATTGGACAGCTTTTGGAGACGACGCTCCTAAATCTGGTCA
ACTACCCTTCCCTCATCGCCACCAACGCCGCCCGTCACCGCCTGGCCGTG
GGGCCGGACAAGGTGCTGATTGAGTTTGGATTGCGAAGGGCCCAGGGTCC
GGACGGTGCCATGTCTGCGGCAAAGTACTCCTATCTCGGGGGATTCGATG
GGACGAGCAATGTGCTTGCGGGCCGTTTGCTCAGCATCGCCATCAGTGGC
ACCCACGCTCATGCGTATGTGCAATCGTACGTGAGCCTGGATGACCTCCA
GAATCCCTTTTTAGACGATCAAAATCTGGTAGAGAAAGCGTTGGCATACC
GGTCCACCTTGGGCTTTTCCGATAGTAATTTGGGGGAGTTTGCGGCCTTT
GTCGCTTATGCTCAGTCATGGCCCGATAACTTTCTGTGTTTGGTCGATAC
CTACGATACGCTCAATTCGGGGATACCCAATTTTCTGAGTGTTGCTTTGG
CGTTGCATGATTTGGGGTATGCGCCGGTGGGGGTACGGTTGGACTCGGGA
GACTTGGCTTACTTGTCAAAGCGGATCAGGGCGTGGTTTACCAGGGTGGC
GTCGACTCACGGACGGCCGACGTTTGAAAAGCTTCGGATTGTGGCGAGTA
ATAATATCAATGAAGATGTGTTGTACGCCTTGAGTAAGCAGGGACATTCC
ATCGATGCCTTCGGCGTGGGAACTCACTTGGTCACGTGTCAGGCACAGCC
GGCCTTGGGATGTGTTTATAAGCTGGTGGAGATCTGCGGGAAACCACGGA
TCAAGATCTCTAATGAAGTAGAGAAAGTTACCTTGCCGAGTCGGAAGGAC
CTCTATCGCTTTTTCAACGAATCAGGCGTGGCCGTGGTGGATTTCATGAC
TAAAAACGGTGAAGCCGCGCCAAAACCAGGGCAGCGCCGATTGTGTCGGC
ATCCGTTCGACTCGAAGAAGCGTGCTTATGTCACACCCTCCACCGTCGAA
CCGTTGCTTAAGCTGGTTTGGGACGGACAGGCGGGTGGCATTCAACCAGG
GGCCTTGCGGACATTGGGAGAAAGTAGAGAGTTCGTGATGGATCAGTTGA
AGGGCATCCGAGAGGATGTTTTGAGGCACATTAATCCTACGCCGTACAAG
GTAAGCGTTAGTGAGGAGCTCCATGCGTTGTTGCACCAGCTTTGGGAGAT
GAATGCACCGGTGGGTCAGCTATGA

Synonyms

Publications