jgi.p|Nanoce1779_2|533007, mRNA_8854 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533007
Unique Name	mRNA_8854
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1230
Alignment location	scaffold_29:34442..35671 +

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Properties


Property Name	Value
TranscriptId	533093
Track	FilteredModels2
ProteinId	533007

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:34442..35671 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533007	gene_8854	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533007	mRNA_8854-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8854	CDS_8854	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:34442..35671+
coding sequence from alignment at scaffold_29:34442..35671+

mRNA sequence

>mRNA_8854 ID=mRNA_8854|Name=jgi.p|Nanoce1779_2|533007|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp
ATGCAAGGTACCCGCGTCGTGGTTAAAGAGAAAATCCTTCTTAATCTTGC
TTCCTTTGATTTCCTCGGCCTAGCCGGTCGTCCCGAGGTGAAGGATGCAG
CACGCGCGGCGCTGAATAAGTACGGGTGTGGTTCATGTGGACCCCGCGGG
TTTTATGGCTCCATTGATGTGCATGTAGGAGCGGAGCAAGCTATGGCAAA
GTTTATGGGTGCAGAGGAAGCCATTTCGTACTCGGATGCGGCGAGCAGTG
TGAGCTCGACCTTGCCGGCGTTTGCGAAGAAAGGAGATTTGCTGGTGGTA
GATGATGGGGTGTACGAGCCGATCCAGACGGCGATTAACTTGAGTAGGGC
GCAAGTGAGATGGTTTCGGCACAATGACATGGAGGATTTGAAACGGGTGT
TGGAGGGAGTGGCGCGGGAGGATGCGAGGTTGGGGAGAAACGTGCTGGAG
CAACGGCGGTTTGTGGTGGTGGAGGGGTTGTACAAGAACTACGGAGACCT
GTGCCCGCTGCCCGCGTTGGTGGCGTTGAAGAAGGAGTTTTGTTACCGAC
TATATTTGGATCAGACATTCTCGTTTGGTTGTTTCGGGAAAGGGGGGAGG
GGGGTTGCAGAGCACTGGGGGGTGGACTTGGGAGAGATCGATATTATGAG
TGTTTCAATTTCGCATGCCCTGGGCTCAGTGGGTGGCATGTGTGTGGGGA
CGCATGAGGTGGTGGATCACCAAAGATTATCTGGAGCAGGGTATTGTTAC
TCGGCTTCTGCTCCTCCGTTCACTTCGTCCGCCGCAATCGCGGCATTAGA
GCTGCTGGAGAAGGAACCGGGGTTGGTGGCCAAGTTACAAGAAAATGCGA
GTTTTTTAAGTCGGAACTTGAGAAAGATTCCGGGATTGGAGGTGAGGAGT
GAGGAGGTTTCACCGATTTTACATGTGGGCTTGACGCAGGAGGGAGGCTG
GGGAGGGAGGAAGTATGAGCAGGAGATATTGAGGGAGGTATCGCGGGGTT
GCGTGGCAGGGGGGTATGCGGTTGTCACTAGCAAGGTGACTTGTTTGGTG
GAAGAGAGGGAAGGAGGGAGGGGAGGGGAAAGAGCAGGAGGAGGAGTAGC
TTTGGCGCTGCCATCGTTGAGGTTGACGGTGTCGGCGGCGCATAGTCAGG
CGGAGTTACAAGGGGCGGTGAACGTCATCAGAAAGGTGGTTGGCGCGGCG
TTGAAGAAGAGGAAGCAGTCGAGGGGCTGA

protein sequence of jgi.p|Nanoce1779_2|533007

>mRNA_8854-protein ID=mRNA_8854-protein|Name=jgi.p|Nanoce1779_2|533007|organism=Nannochloropsis oceanica|type=polypeptide|length=410bp
MQGTRVVVKEKILLNLASFDFLGLAGRPEVKDAARAALNKYGCGSCGPRG
FYGSIDVHVGAEQAMAKFMGAEEAISYSDAASSVSSTLPAFAKKGDLLVV
DDGVYEPIQTAINLSRAQVRWFRHNDMEDLKRVLEGVAREDARLGRNVLE
QRRFVVVEGLYKNYGDLCPLPALVALKKEFCYRLYLDQTFSFGCFGKGGR
GVAEHWGVDLGEIDIMSVSISHALGSVGGMCVGTHEVVDHQRLSGAGYCY
SASAPPFTSSAAIAALELLEKEPGLVAKLQENASFLSRNLRKIPGLEVRS
EEVSPILHVGLTQEGGWGGRKYEQEILREVSRGCVAGGYAVVTSKVTCLV
EEREGGRGGERAGGGVALALPSLRLTVSAAHSQAELQGAVNVIRKVVGAA
LKKRKQSRG*

mRNA from alignment at scaffold_29:34442..35671+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8854 ID=mRNA_8854|Name=jgi.p|Nanoce1779_2|533007|organism=Nannochloropsis oceanica|type=mRNA|length=1230bp|location=Sequence derived from alignment at scaffold_29:34442..35671+ (Nannochloropsis oceanica)
ATGCAAGGTACCCGCGTCGTGGTTAAAGAGAAAATCCTTCTTAATCTTGC
TTCCTTTGATTTCCTCGGCCTAGCCGGTCGTCCCGAGGTGAAGGATGCAG
CACGCGCGGCGCTGAATAAGTACGGGTGTGGTTCATGTGGACCCCGCGGG
TTTTATGGCTCCATTGATGTGCATGTAGGAGCGGAGCAAGCTATGGCAAA
GTTTATGGGTGCAGAGGAAGCCATTTCGTACTCGGATGCGGCGAGCAGTG
TGAGCTCGACCTTGCCGGCGTTTGCGAAGAAAGGAGATTTGCTGGTGGTA
GATGATGGGGTGTACGAGCCGATCCAGACGGCGATTAACTTGAGTAGGGC
GCAAGTGAGATGGTTTCGGCACAATGACATGGAGGATTTGAAACGGGTGT
TGGAGGGAGTGGCGCGGGAGGATGCGAGGTTGGGGAGAAACGTGCTGGAG
CAACGGCGGTTTGTGGTGGTGGAGGGGTTGTACAAGAACTACGGAGACCT
GTGCCCGCTGCCCGCGTTGGTGGCGTTGAAGAAGGAGTTTTGTTACCGAC
TATATTTGGATCAGACATTCTCGTTTGGTTGTTTCGGGAAAGGGGGGAGG
GGGGTTGCAGAGCACTGGGGGGTGGACTTGGGAGAGATCGATATTATGAG
TGTTTCAATTTCGCATGCCCTGGGCTCAGTGGGTGGCATGTGTGTGGGGA
CGCATGAGGTGGTGGATCACCAAAGATTATCTGGAGCAGGGTATTGTTAC
TCGGCTTCTGCTCCTCCGTTCACTTCGTCCGCCGCAATCGCGGCATTAGA
GCTGCTGGAGAAGGAACCGGGGTTGGTGGCCAAGTTACAAGAAAATGCGA
GTTTTTTAAGTCGGAACTTGAGAAAGATTCCGGGATTGGAGGTGAGGAGT
GAGGAGGTTTCACCGATTTTACATGTGGGCTTGACGCAGGAGGGAGGCTG
GGGAGGGAGGAAGTATGAGCAGGAGATATTGAGGGAGGTATCGCGGGGTT
GCGTGGCAGGGGGGTATGCGGTTGTCACTAGCAAGGTGACTTGTTTGGTG
GAAGAGAGGGAAGGAGGGAGGGGAGGGGAAAGAGCAGGAGGAGGAGTAGC
TTTGGCGCTGCCATCGTTGAGGTTGACGGTGTCGGCGGCGCATAGTCAGG
CGGAGTTACAAGGGGCGGTGAACGTCATCAGAAAGGTGGTTGGCGCGGCG
TTGAAGAAGAGGAAGCAGTCGAGGGGCTGA

Coding sequence (CDS) from alignment at scaffold_29:34442..35671+

>mRNA_8854 ID=mRNA_8854|Name=jgi.p|Nanoce1779_2|533007|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at scaffold_29:34442..35671+ (Nannochloropsis oceanica)
ATGCAAGGTACCCGCGTCGTGGTTAAAGAGAAAATCCTTCTTAATCTTGC
TTCCTTTGATTTCCTCGGCCTAGCCGGTCGTCCCGAGGTGAAGGATGCAG
CACGCGCGGCGCTGAATAAGTACGGGTGTGGTTCATGTGGACCCCGCGGG
TTTTATGGCTCCATTGATGTGCATGTAGGAGCGGAGCAAGCTATGGCAAA
GTTTATGGGTGCAGAGGAAGCCATTTCGTACTCGGATGCGGCGAGCAGTG
TGAGCTCGACCTTGCCGGCGTTTGCGAAGAAAGGAGATTTGCTGGTGGTA
GATGATGGGGTGTACGAGCCGATCCAGACGGCGATTAACTTGAGTAGGGC
GCAAGTGAGATGGTTTCGGCACAATGACATGGAGGATTTGAAACGGGTGT
TGGAGGGAGTGGCGCGGGAGGATGCGAGGTTGGGGAGAAACGTGCTGGAG
CAACGGCGGTTTGTGGTGGTGGAGGGGTTGTACAAGAACTACGGAGACCT
GTGCCCGCTGCCCGCGTTGGTGGCGTTGAAGAAGGAGTTTTGTTACCGAC
TATATTTGGATCAGACATTCTCGTTTGGTTGTTTCGGGAAAGGGGGGAGG
GGGGTTGCAGAGCACTGGGGGGTGGACTTGGGAGAGATCGATATTATGAG
TGTTTCAATTTCGCATGCCCTGGGCTCAGTGGGTGGCATGTGTGTGGGGA
CGCATGAGGTGGTGGATCACCAAAGATTATCTGGAGCAGGGTATTGTTAC
TCGGCTTCTGCTCCTCCGTTCACTTCGTCCGCCGCAATCGCGGCATTAGA
GCTGCTGGAGAAGGAACCGGGGTTGGTGGCCAAGTTACAAGAAAATGCGA
GTTTTTTAAGTCGGAACTTGAGAAAGATTCCGGGATTGGAGGTGAGGAGT
GAGGAGGTTTCACCGATTTTACATGTGGGCTTGACGCAGGAGGGAGGCTG
GGGAGGGAGGAAGTATGAGCAGGAGATATTGAGGGAGGTATCGCGGGGTT
GCGTGGCAGGGGGGTATGCGGTTGTCACTAGCAAGGTGACTTGTTTGGTG
GAAGAGAGGGAAGGAGGGAGGGGAGGGGAAAGAGCAGGAGGAGGAGTAGC
TTTGGCGCTGCCATCGTTGAGGTTGACGGTGTCGGCGGCGCATAGTCAGG
CGGAGTTACAAGGGGCGGTGAACGTCATCAGAAAGGTGGTTGGCGCGGCG
TTGAAGAAGAGGAAGCAGTCGAGGGGCTGA

Synonyms

Publications