jgi.p|Nanoce1779_2|532418, mRNA_8443 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|532418
Unique Name	mRNA_8443
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1917
Alignment location	scaffold_24:293922..295838 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	532504
Track	FilteredModels2
ProteinId	532418

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:293922..295838 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532418	gene_8443	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|532418	mRNA_8443-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8443	CDS_8443	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:293922..295838+
coding sequence from alignment at scaffold_24:293922..295838+

mRNA sequence

>mRNA_8443 ID=mRNA_8443|Name=jgi.p|Nanoce1779_2|532418|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp
ATGAGCTATAACGAGCTCTCTTTCCTTCTTCGTCGGGTTTATCGCGAACA
GTACGGAGCAGCTACCGAAGGGGCTGCTCTGCTCGCTCATGCACGTGGTC
CCTTGAGCGATAAACCAGCCTTGCGTGGGATCGCCCCTGAGCGTCTCTTG
GCGAGATCTTCTTTGCTTCGTATCTTCAACCAGCGCCTTATCCGTGCTTT
GCCTCTGCTGTCGCTGGCTCTCCCGGAGGTGGAGTGGCAGAGGGAGCAGA
TAGGGCACTCGGACCCGATCTCCGTCGAGACCACCTACCCTCCCTCCTTC
TCCTCCTCTTTCTCCTCCTCCGTCTCCTCAACAGCAGGGATCTGGCGCCC
AGCCTGCACGGCTCGTCGTATACGCTCTTTGCGAAAGCTGATTCTGACAC
ACACAAAGCGCGCTCACTGGGAAGGCATGCTTCAAGCCACCACCACCCCC
ACCCCTCTCCATCAAGATGAATACGAAGACCCTCGTGAGATCAAGACCAT
CAAAATTAATCGCGTCCGGGCCTCGGCTTCTCGTTTGGCCTCCATCCGCA
ACATGAACGAACGCCTGCGCTTGTCGGTGTTTGGGCAGCTCCACAAGGAA
ATGCGAAATTGGTCGCACTCCGCCTTTCGTCGAGCGCACCTGGGCAAAGG
CCACGGCGGACAAAAGCGTGCCTTCAAAGTCCGCTTTCTCGGCGAAGGGG
TCAACGACTACGGTGGCCCGTATCGTGCCGTCTTCGAGCAGGTCGCTGAC
GAGCTCCAAGACGATCGCCACCTCCTGCCGCTCGCCGCCCCTTCCCCCCA
TCGCCCCGGAGGCGAAAAGTGCCTCTTGCCTCTGCTTGTCCCGTGCCCGA
ATCGCACCGGCGCCGTCGGTCCCAATCAAGACAAATTCGTGCTGAGCCCC
GGGCTGCCCTCTCCGTTGGCGTTGGAGCTGATGCAACTCCTGGGGAAGAT
GGTCGGGATGGCTCTCAGGCATGGGTTGCCTATGGGATTAGACCTGCCCT
CGACGGTATGGAGGCCTCTAGTGGGATTACCATTGAACAGGGACGCGCTG
GAGTCGCTCGATTTGCTCGCTGTGAGGAATCTGGAGCAGGTGGAACAGAC
CGCGCTGGCGGCTGAGATGAAGGCAGCGAGGGCTGGGAGGGAGGGGAGGG
AGGGAGGGCAGGAGGGCGGAGGGGAGGAGGGGAGTAGTAGCTTGGTGCCG
GAGGGATGGGAGGAGGAGCTGACCTTTACTACGCACCTGAGTGACGGTTC
CTTGGTGGCTTTGCCTTATGTCCCTCCTTCTCCTGTCGTTCCGCAGCCGC
AGCAGCAGCAGCAGCAGCAGCATCAGCAGCACCAGCAGCCGTCGTCCCAG
CGTGTGACAAGGGCGAATTGGCGGGAGTACGTCCGGTTGGTCGAGACGGT
CCGTCTCAAGGAAAGCTCGCCGATGCTGAGGGCTTTCCAAGACGGGCTTG
CCTCAGTGCTGCCCCAGGAGCTCTTCCCCCTCTTTACGGAGGAGGAGGTG
GAGCGATTGATCTGTGGTGTGCGCGAAGTGGACGTGGACCTGCTCAAGCA
GTGCACAGACTACGAGGAAGGGACCGAAGCAGGGCAAGCGCACATTCAAG
CCTTCTGGGAGGTCCTGCGCGAGATGACCCCCCAGGAACGAACGGACTTC
CTGCGCTTTGCCTGGGCCCGCTCCCGAATGCCGGCGTCCGCAAAGGACTT
CCCCATGAACTTCCGGCTACAAGGCCCCCAAGGAGGAGCGAAAGAGAGCC
CCGACGATTATCTCCCCCACGCTCAAACATGTTTCTTTTCTCTGTCGTTA
CCTCGATATTCGAACAAGGAGATTCTGCGGGCGAAGCTCTTGTTGGCAAT
TTCGAACTCTCCCAATATGGACGCAGATGTGCGACTGCATACGGCGGAAG
GGTGGGCGGAGACGTAG

protein sequence of jgi.p|Nanoce1779_2|532418

>mRNA_8443-protein ID=mRNA_8443-protein|Name=jgi.p|Nanoce1779_2|532418|organism=Nannochloropsis oceanica|type=polypeptide|length=639bp
MSYNELSFLLRRVYREQYGAATEGAALLAHARGPLSDKPALRGIAPERLL
ARSSLLRIFNQRLIRALPLLSLALPEVEWQREQIGHSDPISVETTYPPSF
SSSFSSSVSSTAGIWRPACTARRIRSLRKLILTHTKRAHWEGMLQATTTP
TPLHQDEYEDPREIKTIKINRVRASASRLASIRNMNERLRLSVFGQLHKE
MRNWSHSAFRRAHLGKGHGGQKRAFKVRFLGEGVNDYGGPYRAVFEQVAD
ELQDDRHLLPLAAPSPHRPGGEKCLLPLLVPCPNRTGAVGPNQDKFVLSP
GLPSPLALELMQLLGKMVGMALRHGLPMGLDLPSTVWRPLVGLPLNRDAL
ESLDLLAVRNLEQVEQTALAAEMKAARAGREGREGGQEGGGEEGSSSLVP
EGWEEELTFTTHLSDGSLVALPYVPPSPVVPQPQQQQQQQHQQHQQPSSQ
RVTRANWREYVRLVETVRLKESSPMLRAFQDGLASVLPQELFPLFTEEEV
ERLICGVREVDVDLLKQCTDYEEGTEAGQAHIQAFWEVLREMTPQERTDF
LRFAWARSRMPASAKDFPMNFRLQGPQGGAKESPDDYLPHAQTCFFSLSL
PRYSNKEILRAKLLLAISNSPNMDADVRLHTAEGWAET*

mRNA from alignment at scaffold_24:293922..295838+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8443 ID=mRNA_8443|Name=jgi.p|Nanoce1779_2|532418|organism=Nannochloropsis oceanica|type=mRNA|length=1917bp|location=Sequence derived from alignment at scaffold_24:293922..295838+ (Nannochloropsis oceanica)
ATGAGCTATAACGAGCTCTCTTTCCTTCTTCGTCGGGTTTATCGCGAACA
GTACGGAGCAGCTACCGAAGGGGCTGCTCTGCTCGCTCATGCACGTGGTC
CCTTGAGCGATAAACCAGCCTTGCGTGGGATCGCCCCTGAGCGTCTCTTG
GCGAGATCTTCTTTGCTTCGTATCTTCAACCAGCGCCTTATCCGTGCTTT
GCCTCTGCTGTCGCTGGCTCTCCCGGAGGTGGAGTGGCAGAGGGAGCAGA
TAGGGCACTCGGACCCGATCTCCGTCGAGACCACCTACCCTCCCTCCTTC
TCCTCCTCTTTCTCCTCCTCCGTCTCCTCAACAGCAGGGATCTGGCGCCC
AGCCTGCACGGCTCGTCGTATACGCTCTTTGCGAAAGCTGATTCTGACAC
ACACAAAGCGCGCTCACTGGGAAGGCATGCTTCAAGCCACCACCACCCCC
ACCCCTCTCCATCAAGATGAATACGAAGACCCTCGTGAGATCAAGACCAT
CAAAATTAATCGCGTCCGGGCCTCGGCTTCTCGTTTGGCCTCCATCCGCA
ACATGAACGAACGCCTGCGCTTGTCGGTGTTTGGGCAGCTCCACAAGGAA
ATGCGAAATTGGTCGCACTCCGCCTTTCGTCGAGCGCACCTGGGCAAAGG
CCACGGCGGACAAAAGCGTGCCTTCAAAGTCCGCTTTCTCGGCGAAGGGG
TCAACGACTACGGTGGCCCGTATCGTGCCGTCTTCGAGCAGGTCGCTGAC
GAGCTCCAAGACGATCGCCACCTCCTGCCGCTCGCCGCCCCTTCCCCCCA
TCGCCCCGGAGGCGAAAAGTGCCTCTTGCCTCTGCTTGTCCCGTGCCCGA
ATCGCACCGGCGCCGTCGGTCCCAATCAAGACAAATTCGTGCTGAGCCCC
GGGCTGCCCTCTCCGTTGGCGTTGGAGCTGATGCAACTCCTGGGGAAGAT
GGTCGGGATGGCTCTCAGGCATGGGTTGCCTATGGGATTAGACCTGCCCT
CGACGGTATGGAGGCCTCTAGTGGGATTACCATTGAACAGGGACGCGCTG
GAGTCGCTCGATTTGCTCGCTGTGAGGAATCTGGAGCAGGTGGAACAGAC
CGCGCTGGCGGCTGAGATGAAGGCAGCGAGGGCTGGGAGGGAGGGGAGGG
AGGGAGGGCAGGAGGGCGGAGGGGAGGAGGGGAGTAGTAGCTTGGTGCCG
GAGGGATGGGAGGAGGAGCTGACCTTTACTACGCACCTGAGTGACGGTTC
CTTGGTGGCTTTGCCTTATGTCCCTCCTTCTCCTGTCGTTCCGCAGCCGC
AGCAGCAGCAGCAGCAGCAGCATCAGCAGCACCAGCAGCCGTCGTCCCAG
CGTGTGACAAGGGCGAATTGGCGGGAGTACGTCCGGTTGGTCGAGACGGT
CCGTCTCAAGGAAAGCTCGCCGATGCTGAGGGCTTTCCAAGACGGGCTTG
CCTCAGTGCTGCCCCAGGAGCTCTTCCCCCTCTTTACGGAGGAGGAGGTG
GAGCGATTGATCTGTGGTGTGCGCGAAGTGGACGTGGACCTGCTCAAGCA
GTGCACAGACTACGAGGAAGGGACCGAAGCAGGGCAAGCGCACATTCAAG
CCTTCTGGGAGGTCCTGCGCGAGATGACCCCCCAGGAACGAACGGACTTC
CTGCGCTTTGCCTGGGCCCGCTCCCGAATGCCGGCGTCCGCAAAGGACTT
CCCCATGAACTTCCGGCTACAAGGCCCCCAAGGAGGAGCGAAAGAGAGCC
CCGACGATTATCTCCCCCACGCTCAAACATGTTTCTTTTCTCTGTCGTTA
CCTCGATATTCGAACAAGGAGATTCTGCGGGCGAAGCTCTTGTTGGCAAT
TTCGAACTCTCCCAATATGGACGCAGATGTGCGACTGCATACGGCGGAAG
GGTGGGCGGAGACGTAG

Coding sequence (CDS) from alignment at scaffold_24:293922..295838+

>mRNA_8443 ID=mRNA_8443|Name=jgi.p|Nanoce1779_2|532418|organism=Nannochloropsis oceanica|type=CDS|length=1917bp|location=Sequence derived from alignment at scaffold_24:293922..295838+ (Nannochloropsis oceanica)
ATGAGCTATAACGAGCTCTCTTTCCTTCTTCGTCGGGTTTATCGCGAACA
GTACGGAGCAGCTACCGAAGGGGCTGCTCTGCTCGCTCATGCACGTGGTC
CCTTGAGCGATAAACCAGCCTTGCGTGGGATCGCCCCTGAGCGTCTCTTG
GCGAGATCTTCTTTGCTTCGTATCTTCAACCAGCGCCTTATCCGTGCTTT
GCCTCTGCTGTCGCTGGCTCTCCCGGAGGTGGAGTGGCAGAGGGAGCAGA
TAGGGCACTCGGACCCGATCTCCGTCGAGACCACCTACCCTCCCTCCTTC
TCCTCCTCTTTCTCCTCCTCCGTCTCCTCAACAGCAGGGATCTGGCGCCC
AGCCTGCACGGCTCGTCGTATACGCTCTTTGCGAAAGCTGATTCTGACAC
ACACAAAGCGCGCTCACTGGGAAGGCATGCTTCAAGCCACCACCACCCCC
ACCCCTCTCCATCAAGATGAATACGAAGACCCTCGTGAGATCAAGACCAT
CAAAATTAATCGCGTCCGGGCCTCGGCTTCTCGTTTGGCCTCCATCCGCA
ACATGAACGAACGCCTGCGCTTGTCGGTGTTTGGGCAGCTCCACAAGGAA
ATGCGAAATTGGTCGCACTCCGCCTTTCGTCGAGCGCACCTGGGCAAAGG
CCACGGCGGACAAAAGCGTGCCTTCAAAGTCCGCTTTCTCGGCGAAGGGG
TCAACGACTACGGTGGCCCGTATCGTGCCGTCTTCGAGCAGGTCGCTGAC
GAGCTCCAAGACGATCGCCACCTCCTGCCGCTCGCCGCCCCTTCCCCCCA
TCGCCCCGGAGGCGAAAAGTGCCTCTTGCCTCTGCTTGTCCCGTGCCCGA
ATCGCACCGGCGCCGTCGGTCCCAATCAAGACAAATTCGTGCTGAGCCCC
GGGCTGCCCTCTCCGTTGGCGTTGGAGCTGATGCAACTCCTGGGGAAGAT
GGTCGGGATGGCTCTCAGGCATGGGTTGCCTATGGGATTAGACCTGCCCT
CGACGGTATGGAGGCCTCTAGTGGGATTACCATTGAACAGGGACGCGCTG
GAGTCGCTCGATTTGCTCGCTGTGAGGAATCTGGAGCAGGTGGAACAGAC
CGCGCTGGCGGCTGAGATGAAGGCAGCGAGGGCTGGGAGGGAGGGGAGGG
AGGGAGGGCAGGAGGGCGGAGGGGAGGAGGGGAGTAGTAGCTTGGTGCCG
GAGGGATGGGAGGAGGAGCTGACCTTTACTACGCACCTGAGTGACGGTTC
CTTGGTGGCTTTGCCTTATGTCCCTCCTTCTCCTGTCGTTCCGCAGCCGC
AGCAGCAGCAGCAGCAGCAGCATCAGCAGCACCAGCAGCCGTCGTCCCAG
CGTGTGACAAGGGCGAATTGGCGGGAGTACGTCCGGTTGGTCGAGACGGT
CCGTCTCAAGGAAAGCTCGCCGATGCTGAGGGCTTTCCAAGACGGGCTTG
CCTCAGTGCTGCCCCAGGAGCTCTTCCCCCTCTTTACGGAGGAGGAGGTG
GAGCGATTGATCTGTGGTGTGCGCGAAGTGGACGTGGACCTGCTCAAGCA
GTGCACAGACTACGAGGAAGGGACCGAAGCAGGGCAAGCGCACATTCAAG
CCTTCTGGGAGGTCCTGCGCGAGATGACCCCCCAGGAACGAACGGACTTC
CTGCGCTTTGCCTGGGCCCGCTCCCGAATGCCGGCGTCCGCAAAGGACTT
CCCCATGAACTTCCGGCTACAAGGCCCCCAAGGAGGAGCGAAAGAGAGCC
CCGACGATTATCTCCCCCACGCTCAAACATGTTTCTTTTCTCTGTCGTTA
CCTCGATATTCGAACAAGGAGATTCTGCGGGCGAAGCTCTTGTTGGCAAT
TTCGAACTCTCCCAATATGGACGCAGATGTGCGACTGCATACGGCGGAAG
GGTGGGCGGAGACGTAG

Synonyms

Publications