jgi.p|Nanoce1779_2|602003, mRNA_8433 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602003
Unique Name	mRNA_8433
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2470
Alignment location	scaffold_24:256582..259051 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602089
Track	FilteredModels2
ProteinId	602003

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:256582..259051 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602003	gene_8433	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602003	mRNA_8433-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8433	CDS_8433	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:256582..259051+
coding sequence from alignment at scaffold_24:256582..259051+

mRNA sequence

>mRNA_8433 ID=mRNA_8433|Name=jgi.p|Nanoce1779_2|602003|organism=Nannochloropsis oceanica|type=mRNA|length=2470bp
ACAGGCAAGACGATAAAGAGAGCCGCAAGCAAGGACACATCTTCCCTCAA
AAATTGGAGATCGAAGGGGCGCTGTGTGCGTCTTTCGCTCAAGCACGCAA
GCTGAGGTGGATGAGGGCGTCGCAGCCACCGCCGCACTATCTCGAACACG
AGCTACCTCGAAATCGAGCCGGTGCATGGCCCCACCATCCTCCTCCTCCT
CCTCATCCTCCTCACCCTTTACTCCACCACCATCACCAGTACCCTGTCTT
CCTCCCGCAGTCGCATCAGGAGGCGGTGCTGATGCACAGGCAGAATTATG
GTCCTCCTAATCAATTTGAGCGCGTCTCGTCTATGCATCCCTCCTACGGT
CCACCTGGCGATGAGCCCCAGCAATCAGCGCCCCCTTCACACTTCTACCA
TCAACCTTATCATCACCAACACGAATATTTTCAGCATCAGCGGAACTATC
AGCACCATCCGCAGTATCCCGTCCATGCTTTCCAGCCACCTTTCCACCAC
CCTATTCATGGCTTTTTCCCTCCTTCTCCTTCTCCTCCTCCTCCTTTTCC
TCCTCCCCCTCCTCCTGCTCGCCAGTGGAGGGACGGCAAGATTCCCCTCA
TGGCTGAAGTTCGACGGGGTAGGACGCATTCATTACCGTCGTCGTCACCC
TGCCCGAAATCAAATCTCGTTCGGGGCTTGCGGGGGGGTGGTCAGTGTCA
CATTGGAGCCAGTGGCATGACCAAAGGCTTCTTCGGGAGTCGGGGGCGCA
ACAGCAACAGTTGGCGGGGAGGACGTGGAGGACGAGGAGGACAAGGAGCA
GAAGGAGCAGAAGGAGCAGATAGAGGAGATGGAGGCGTAAAGGAGATTCA
ATGCGACGACCGAAAGGTCTTGTTGAGCTTAGTCACCGCCAGGACGGCGG
GTCCAACACCAAACGCGACAGCGATCGAAAAGGTCAAGTGTGTGATCGAA
CAAATGCACATGGTAGCGCCCTTCCTCACCCCTGCGGAGGGCTTGCGGCT
ATCGGGAGTAGTGCGAAGTTGGACACGAGGCTACCGGGAAGTGACGCGAG
AGCTGCGCGTAGGAGAACCGCCGTCCGGCATGGCCGTTTCGGGCCATTGG
ACCTCTCTTCTCAACCTCTTGTCTTCCTTGACGAATTTAGAGACCTTGCG
CGTCACGCATTACCGCTCAGTATTTGGTGTTACGAAGTGTCTGGGGTACC
GCTTGACACAGCGTCTAGTATGTTTGGAGCTGAGTCATTCCAAAATGTGG
TGCACCGACGCTGGGCGTCTTATGGGTGCTTTGATTCAGAAATACTTGCC
TGCCCTCGAGCGCTTGCTTTTGATAGACTGCGGGTTGGGCGACCGCGCGA
TCGAGCACCTTGCGGTTGCGGTCCTGTCAGGTGGCTGTCGGAATCTGGTC
GAGTTGGAATTGGGGGACAACACCTTCCGTGAATCTATTTTGAGCCTAGC
CACGGCATTGAACAGCACGTGTGTATCCTCTGCAGATGAGAAAGGAGTGG
GGGATGAGCGGGTACCCACTACCAAGCTAAGGTTGTTGGGATTGGGAGGG
AATGTGCTTCAGAAGGAAGGGGCAAAGTTGCTCGTGCTGGGTTTATCGCA
TTGCAATGGTCGTGACAGTGCGGGCATGGGAAAAGAAAGTAATCTGAGGT
ACCTTACCGAGCTGAATGTCGTGGAGTGCGGGCTCGAACTCGAAGGACTG
GAAGCTCTGTGTCCAGGCCTGCGGCAGGGCCCCTTATCTCGTCTTACTGC
CCTCCGCTTGAACGCGAACCGGTTAGGTGACGCGGGTGTGGCACTTCTGG
CCTCGGCAGTGACGGAAGGTGCGTTGTCGGGGTTGCGTGACTTAGATTTG
GGTGCAAACTACCTTTCAGACAATGGGATGCGTGCCCTTCTAGATGTCGT
CAAGACAGGAATGGCTTTGCAGCAGCTGCGCCGACTGAATCTGTCTTTCA
ACTTTTTGACGCCCGAGACGGTGTGGGCATTATTGCAGTGCTGTGAGTTC
GGAGAGGGCGGGAGGGAGAACGCCAGAGATGATGATGGTGGTATGGCCAA
TCAAGGCGGCTGGGCGTTCTTGCAGCAGTGCGATATGTACATGAATGAAA
TCACAGCGAAGGAACGTGCCGAACTGCAGCTTGCGCTCAAGGAGCGGGCT
CCGGGGCTAGACTGCTTCATGTGATATCGACGGGGATTGTATCTGACATA
TGTAGAGCAGGAAAGATTTGGAGGCAAGTGTAGGACAGCAAATAAATCGA
ATGAACTTTGCTTGATTCGCTTCCCGGCCGATATGAAAGAGAAAGTATGC
AAAAGATCTGATTTGGTCATGAAGCGCCAAGAACCCACAGCAGATTATAT
CAGGAAAGGAGTTGAAGGCTAATCAACATACTAGAGTTATTGAGCCAGCT
ACATATAGATGAGACAAAAAAGACACCAGCGAATGAAACAGTAACCAAAG
TACAAAAACATGAAGATACT

protein sequence of jgi.p|Nanoce1779_2|602003

>mRNA_8433-protein ID=mRNA_8433-protein|Name=jgi.p|Nanoce1779_2|602003|organism=Nannochloropsis oceanica|type=polypeptide|length=688bp
MRASQPPPHYLEHELPRNRAGAWPHHPPPPPHPPHPLLHHHHQYPVFLPQ
SHQEAVLMHRQNYGPPNQFERVSSMHPSYGPPGDEPQQSAPPSHFYHQPY
HHQHEYFQHQRNYQHHPQYPVHAFQPPFHHPIHGFFPPSPSPPPPFPPPP
PPARQWRDGKIPLMAEVRRGRTHSLPSSSPCPKSNLVRGLRGGGQCHIGA
SGMTKGFFGSRGRNSNSWRGGRGGRGGQGAEGAEGADRGDGGVKEIQCDD
RKVLLSLVTARTAGPTPNATAIEKVKCVIEQMHMVAPFLTPAEGLRLSGV
VRSWTRGYREVTRELRVGEPPSGMAVSGHWTSLLNLLSSLTNLETLRVTH
YRSVFGVTKCLGYRLTQRLVCLELSHSKMWCTDAGRLMGALIQKYLPALE
RLLLIDCGLGDRAIEHLAVAVLSGGCRNLVELELGDNTFRESILSLATAL
NSTCVSSADEKGVGDERVPTTKLRLLGLGGNVLQKEGAKLLVLGLSHCNG
RDSAGMGKESNLRYLTELNVVECGLELEGLEALCPGLRQGPLSRLTALRL
NANRLGDAGVALLASAVTEGALSGLRDLDLGANYLSDNGMRALLDVVKTG
MALQQLRRLNLSFNFLTPETVWALLQCCEFGEGGRENARDDDGGMANQGG
WAFLQQCDMYMNEITAKERAELQLALKERAPGLDCFM*

mRNA from alignment at scaffold_24:256582..259051+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8433 ID=mRNA_8433|Name=jgi.p|Nanoce1779_2|602003|organism=Nannochloropsis oceanica|type=mRNA|length=2470bp|location=Sequence derived from alignment at scaffold_24:256582..259051+ (Nannochloropsis oceanica)
ACAGGCAAGACGATAAAGAGAGCCGCAAGCAAGGACACATCTTCCCTCAA
AAATTGGAGATCGAAGGGGCGCTGTGTGCGTCTTTCGCTCAAGCACGCAA
GCTGAGGTGGATGAGGGCGTCGCAGCCACCGCCGCACTATCTCGAACACG
AGCTACCTCGAAATCGAGCCGGTGCATGGCCCCACCATCCTCCTCCTCCT
CCTCATCCTCCTCACCCTTTACTCCACCACCATCACCAGTACCCTGTCTT
CCTCCCGCAGTCGCATCAGGAGGCGGTGCTGATGCACAGGCAGAATTATG
GTCCTCCTAATCAATTTGAGCGCGTCTCGTCTATGCATCCCTCCTACGGT
CCACCTGGCGATGAGCCCCAGCAATCAGCGCCCCCTTCACACTTCTACCA
TCAACCTTATCATCACCAACACGAATATTTTCAGCATCAGCGGAACTATC
AGCACCATCCGCAGTATCCCGTCCATGCTTTCCAGCCACCTTTCCACCAC
CCTATTCATGGCTTTTTCCCTCCTTCTCCTTCTCCTCCTCCTCCTTTTCC
TCCTCCCCCTCCTCCTGCTCGCCAGTGGAGGGACGGCAAGATTCCCCTCA
TGGCTGAAGTTCGACGGGGTAGGACGCATTCATTACCGTCGTCGTCACCC
TGCCCGAAATCAAATCTCGTTCGGGGCTTGCGGGGGGGTGGTCAGTGTCA
CATTGGAGCCAGTGGCATGACCAAAGGCTTCTTCGGGAGTCGGGGGCGCA
ACAGCAACAGTTGGCGGGGAGGACGTGGAGGACGAGGAGGACAAGGAGCA
GAAGGAGCAGAAGGAGCAGATAGAGGAGATGGAGGCGTAAAGGAGATTCA
ATGCGACGACCGAAAGGTCTTGTTGAGCTTAGTCACCGCCAGGACGGCGG
GTCCAACACCAAACGCGACAGCGATCGAAAAGGTCAAGTGTGTGATCGAA
CAAATGCACATGGTAGCGCCCTTCCTCACCCCTGCGGAGGGCTTGCGGCT
ATCGGGAGTAGTGCGAAGTTGGACACGAGGCTACCGGGAAGTGACGCGAG
AGCTGCGCGTAGGAGAACCGCCGTCCGGCATGGCCGTTTCGGGCCATTGG
ACCTCTCTTCTCAACCTCTTGTCTTCCTTGACGAATTTAGAGACCTTGCG
CGTCACGCATTACCGCTCAGTATTTGGTGTTACGAAGTGTCTGGGGTACC
GCTTGACACAGCGTCTAGTATGTTTGGAGCTGAGTCATTCCAAAATGTGG
TGCACCGACGCTGGGCGTCTTATGGGTGCTTTGATTCAGAAATACTTGCC
TGCCCTCGAGCGCTTGCTTTTGATAGACTGCGGGTTGGGCGACCGCGCGA
TCGAGCACCTTGCGGTTGCGGTCCTGTCAGGTGGCTGTCGGAATCTGGTC
GAGTTGGAATTGGGGGACAACACCTTCCGTGAATCTATTTTGAGCCTAGC
CACGGCATTGAACAGCACGTGTGTATCCTCTGCAGATGAGAAAGGAGTGG
GGGATGAGCGGGTACCCACTACCAAGCTAAGGTTGTTGGGATTGGGAGGG
AATGTGCTTCAGAAGGAAGGGGCAAAGTTGCTCGTGCTGGGTTTATCGCA
TTGCAATGGTCGTGACAGTGCGGGCATGGGAAAAGAAAGTAATCTGAGGT
ACCTTACCGAGCTGAATGTCGTGGAGTGCGGGCTCGAACTCGAAGGACTG
GAAGCTCTGTGTCCAGGCCTGCGGCAGGGCCCCTTATCTCGTCTTACTGC
CCTCCGCTTGAACGCGAACCGGTTAGGTGACGCGGGTGTGGCACTTCTGG
CCTCGGCAGTGACGGAAGGTGCGTTGTCGGGGTTGCGTGACTTAGATTTG
GGTGCAAACTACCTTTCAGACAATGGGATGCGTGCCCTTCTAGATGTCGT
CAAGACAGGAATGGCTTTGCAGCAGCTGCGCCGACTGAATCTGTCTTTCA
ACTTTTTGACGCCCGAGACGGTGTGGGCATTATTGCAGTGCTGTGAGTTC
GGAGAGGGCGGGAGGGAGAACGCCAGAGATGATGATGGTGGTATGGCCAA
TCAAGGCGGCTGGGCGTTCTTGCAGCAGTGCGATATGTACATGAATGAAA
TCACAGCGAAGGAACGTGCCGAACTGCAGCTTGCGCTCAAGGAGCGGGCT
CCGGGGCTAGACTGCTTCATGTGATATCGACGGGGATTGTATCTGACATA
TGTAGAGCAGGAAAGATTTGGAGGCAAGTGTAGGACAGCAAATAAATCGA
ATGAACTTTGCTTGATTCGCTTCCCGGCCGATATGAAAGAGAAAGTATGC
AAAAGATCTGATTTGGTCATGAAGCGCCAAGAACCCACAGCAGATTATAT
CAGGAAAGGAGTTGAAGGCTAATCAACATACTAGAGTTATTGAGCCAGCT
ACATATAGATGAGACAAAAAAGACACCAGCGAATGAAACAGTAACCAAAG
TACAAAAACATGAAGATACT

Coding sequence (CDS) from alignment at scaffold_24:256582..259051+

>mRNA_8433 ID=mRNA_8433|Name=jgi.p|Nanoce1779_2|602003|organism=Nannochloropsis oceanica|type=CDS|length=2064bp|location=Sequence derived from alignment at scaffold_24:256582..259051+ (Nannochloropsis oceanica)
ATGAGGGCGTCGCAGCCACCGCCGCACTATCTCGAACACGAGCTACCTCG
AAATCGAGCCGGTGCATGGCCCCACCATCCTCCTCCTCCTCCTCATCCTC
CTCACCCTTTACTCCACCACCATCACCAGTACCCTGTCTTCCTCCCGCAG
TCGCATCAGGAGGCGGTGCTGATGCACAGGCAGAATTATGGTCCTCCTAA
TCAATTTGAGCGCGTCTCGTCTATGCATCCCTCCTACGGTCCACCTGGCG
ATGAGCCCCAGCAATCAGCGCCCCCTTCACACTTCTACCATCAACCTTAT
CATCACCAACACGAATATTTTCAGCATCAGCGGAACTATCAGCACCATCC
GCAGTATCCCGTCCATGCTTTCCAGCCACCTTTCCACCACCCTATTCATG
GCTTTTTCCCTCCTTCTCCTTCTCCTCCTCCTCCTTTTCCTCCTCCCCCT
CCTCCTGCTCGCCAGTGGAGGGACGGCAAGATTCCCCTCATGGCTGAAGT
TCGACGGGGTAGGACGCATTCATTACCGTCGTCGTCACCCTGCCCGAAAT
CAAATCTCGTTCGGGGCTTGCGGGGGGGTGGTCAGTGTCACATTGGAGCC
AGTGGCATGACCAAAGGCTTCTTCGGGAGTCGGGGGCGCAACAGCAACAG
TTGGCGGGGAGGACGTGGAGGACGAGGAGGACAAGGAGCAGAAGGAGCAG
AAGGAGCAGATAGAGGAGATGGAGGCGTAAAGGAGATTCAATGCGACGAC
CGAAAGGTCTTGTTGAGCTTAGTCACCGCCAGGACGGCGGGTCCAACACC
AAACGCGACAGCGATCGAAAAGGTCAAGTGTGTGATCGAACAAATGCACA
TGGTAGCGCCCTTCCTCACCCCTGCGGAGGGCTTGCGGCTATCGGGAGTA
GTGCGAAGTTGGACACGAGGCTACCGGGAAGTGACGCGAGAGCTGCGCGT
AGGAGAACCGCCGTCCGGCATGGCCGTTTCGGGCCATTGGACCTCTCTTC
TCAACCTCTTGTCTTCCTTGACGAATTTAGAGACCTTGCGCGTCACGCAT
TACCGCTCAGTATTTGGTGTTACGAAGTGTCTGGGGTACCGCTTGACACA
GCGTCTAGTATGTTTGGAGCTGAGTCATTCCAAAATGTGGTGCACCGACG
CTGGGCGTCTTATGGGTGCTTTGATTCAGAAATACTTGCCTGCCCTCGAG
CGCTTGCTTTTGATAGACTGCGGGTTGGGCGACCGCGCGATCGAGCACCT
TGCGGTTGCGGTCCTGTCAGGTGGCTGTCGGAATCTGGTCGAGTTGGAAT
TGGGGGACAACACCTTCCGTGAATCTATTTTGAGCCTAGCCACGGCATTG
AACAGCACGTGTGTATCCTCTGCAGATGAGAAAGGAGTGGGGGATGAGCG
GGTACCCACTACCAAGCTAAGGTTGTTGGGATTGGGAGGGAATGTGCTTC
AGAAGGAAGGGGCAAAGTTGCTCGTGCTGGGTTTATCGCATTGCAATGGT
CGTGACAGTGCGGGCATGGGAAAAGAAAGTAATCTGAGGTACCTTACCGA
GCTGAATGTCGTGGAGTGCGGGCTCGAACTCGAAGGACTGGAAGCTCTGT
GTCCAGGCCTGCGGCAGGGCCCCTTATCTCGTCTTACTGCCCTCCGCTTG
AACGCGAACCGGTTAGGTGACGCGGGTGTGGCACTTCTGGCCTCGGCAGT
GACGGAAGGTGCGTTGTCGGGGTTGCGTGACTTAGATTTGGGTGCAAACT
ACCTTTCAGACAATGGGATGCGTGCCCTTCTAGATGTCGTCAAGACAGGA
ATGGCTTTGCAGCAGCTGCGCCGACTGAATCTGTCTTTCAACTTTTTGAC
GCCCGAGACGGTGTGGGCATTATTGCAGTGCTGTGAGTTCGGAGAGGGCG
GGAGGGAGAACGCCAGAGATGATGATGGTGGTATGGCCAATCAAGGCGGC
TGGGCGTTCTTGCAGCAGTGCGATATGTACATGAATGAAATCACAGCGAA
GGAACGTGCCGAACTGCAGCTTGCGCTCAAGGAGCGGGCTCCGGGGCTAG
ACTGCTTCATGTGA

Synonyms

Publications