jgi.p|Nanoce1779_2|229768, mRNA_84 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|229768
Unique Name	mRNA_84
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1730
Alignment location	scaffold_3:226978..228707 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	229854
Track	FilteredModels2
ProteinId	229768

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:226978..228707 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|229768	gene_84	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|229768	mRNA_84-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_84	CDS_84	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:226978..228707+
coding sequence from alignment at scaffold_3:226978..228707+

mRNA sequence

>mRNA_84 ID=mRNA_84|Name=jgi.p|Nanoce1779_2|229768|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp
TTGTCTCACCGTCGTGAGCGTCGTTGCCGCTGCGGCGTCTGGTCCGCTTT
CCTCTTCCTCGCCTGCGTCTCCTTTCACCACTGTGTGGGGGCCAACGCTT
CGCCGAGGACCGCATAGGCGGTCCGCTTTCCTTCTTCTCACTGCCGATAA
GAAGCGGGGATCTTCACTCCCGCCTCAGCTGCAGCATATAGCATCAATCC
GACGAACCTTCGTCCCGATGAATCCCCGCTGCAGCAATAGCAGTCTTAGC
AGTAGCAGCCTTAGCAGCAGGAACAACAACAACAACAACAACAATCACAA
CAACAACAACAACAACAACAACAACAACATCCATGGAGAGGGACCCTCGC
GATTGCCCGTCTTTAATTGGCGAAACCGGCGCGACTTTGGAGAACATGAT
GCCCAGGGCTTGGTAGCCGCCACTGCTGCTGGGCAACAGTACGGTAGCGA
GGACGACAGCGACGGGAGTGATGAGGAAGGAGAGAAGGAGGAAGGGGTGG
TAAACGCTTTGATCATTCTTAATACAGACTGTGTGGGTGGAGGATTATTT
TACAAGTTTTGGGCGCATGCGAGCGTGAGGATCTGTGCGGATGGGGGGGC
AAATCGTTTATATGACGGGTTGGGAGGGGAGGAGAGGGAGCAGTTCCTCC
CTTCAGCGATAAAGGGGGATTTGGATTCAGTGCGGCCGGAAGTGGTGGCA
TGGTATAAAGCGAAAGGGTGTCGTGTGGTGAAGAACGGGGATGTGGACAC
CAACGACCTTGAAAAATGCCTTGAGCTGTTAAAGCATACAGGAGAGGGAG
GAAATGATCAGCGGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGGAACTA
CCGCCCTGGGAGCGCAAGCAACATCCTACCCGGCAGAGTTTAAGAACGAA
CGTTTTTGTTCTCGGGGCGCTGGGTCAGCGTTTTGATCATGCTATGGCGA
GTTGTCATCTGCTTTATCGGTATGCAGGTGTGTTCAAACGGTTGGTATTG
TTGGGGAATGAAAGCGTGGCTTTCTTGTTGCCGGAGGGGAGGAACTGGGT
GGAGCCTGATGGTAGGATGGAGGGGCCGCTGTGTGGCCTGATACCGCTGG
GAAGACAGTGTCGGGAGATTAGAACGAGGGGTTTGAAGTGGGATTTGAGA
GGGGAGAGTATGGAGTTCGGGGGGCTGGTAAGCACGTCCAATGAGGTGGT
GGGAGAGAGGAGGGAGGACGGACGGGAGGGTGTGTGGATTGAGACGTCGG
ATCCGGTGATATGGACGATGGCGTTGAAGGAGGAGTGGCGGAAAGATTTT
CTGCATGTGTGAATCACGATGATGATGAAATGATGGAAATGGGGGTATTT
TGCCGGGAGGGCCGTGGGACTGTGGCTGATGACAGCGCTGAGAACAAAGG
AAACAAATGTTACAAATTGGATGATGAAAGAGAGTGAAGGGTATTGTTAT
CAGCCTTCTGGACACCATCCTTTCGGTTTTTACAGTTTTTTACAATTTCG
CGGAACCATTCCTGGCATTCTCTCTTTTTACCCCCTTCTAGTTTCCAGAC
ACTCCTGCTTCCCTTCCTCCATCATCCCACCACCAGCAATGACGTCACGA
TTTCAACAAACTTCCCTCTCCCCACCAACTGCAAGCTCTGGTAGGCTAGA
AAGCCTGTCATCCAGACACGCATGCTCCAATACCACTTAGTCTTCCTCAA
AGTCACCAACCCCACGGTCATCTCCCCTCC

protein sequence of jgi.p|Nanoce1779_2|229768

>mRNA_84-protein ID=mRNA_84-protein|Name=jgi.p|Nanoce1779_2|229768|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MNPRCSNSSLSSSSLSSRNNNNNNNNHNNNNNNNNNNIHGEGPSRLPVFN
WRNRRDFGEHDAQGLVAATAAGQQYGSEDDSDGSDEEGEKEEGVVNALII
LNTDCVGGGLFYKFWAHASVRICADGGANRLYDGLGGEEREQFLPSAIKG
DLDSVRPEVVAWYKAKGCRVVKNGDVDTNDLEKCLELLKHTGEGGNDQRQ
QQQQQQQQQELPPWERKQHPTRQSLRTNVFVLGALGQRFDHAMASCHLLY
RYAGVFKRLVLLGNESVAFLLPEGRNWVEPDGRMEGPLCGLIPLGRQCRE
IRTRGLKWDLRGESMEFGGLVSTSNEVVGERREDGREGVWIETSDPVIWT
MALKEEWRKDFLHV*

mRNA from alignment at scaffold_3:226978..228707+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_84 ID=mRNA_84|Name=jgi.p|Nanoce1779_2|229768|organism=Nannochloropsis oceanica|type=mRNA|length=1730bp|location=Sequence derived from alignment at scaffold_3:226978..228707+ (Nannochloropsis oceanica)
TTGTCTCACCGTCGTGAGCGTCGTTGCCGCTGCGGCGTCTGGTCCGCTTT
CCTCTTCCTCGCCTGCGTCTCCTTTCACCACTGTGTGGGGGCCAACGCTT
CGCCGAGGACCGCATAGGCGGTCCGCTTTCCTTCTTCTCACTGCCGATAA
GAAGCGGGGATCTTCACTCCCGCCTCAGCTGCAGCATATAGCATCAATCC
GACGAACCTTCGTCCCGATGAATCCCCGCTGCAGCAATAGCAGTCTTAGC
AGTAGCAGCCTTAGCAGCAGGAACAACAACAACAACAACAACAATCACAA
CAACAACAACAACAACAACAACAACAACATCCATGGAGAGGGACCCTCGC
GATTGCCCGTCTTTAATTGGCGAAACCGGCGCGACTTTGGAGAACATGAT
GCCCAGGGCTTGGTAGCCGCCACTGCTGCTGGGCAACAGTACGGTAGCGA
GGACGACAGCGACGGGAGTGATGAGGAAGGAGAGAAGGAGGAAGGGGTGG
TAAACGCTTTGATCATTCTTAATACAGACTGTGTGGGTGGAGGATTATTT
TACAAGTTTTGGGCGCATGCGAGCGTGAGGATCTGTGCGGATGGGGGGGC
AAATCGTTTATATGACGGGTTGGGAGGGGAGGAGAGGGAGCAGTTCCTCC
CTTCAGCGATAAAGGGGGATTTGGATTCAGTGCGGCCGGAAGTGGTGGCA
TGGTATAAAGCGAAAGGGTGTCGTGTGGTGAAGAACGGGGATGTGGACAC
CAACGACCTTGAAAAATGCCTTGAGCTGTTAAAGCATACAGGAGAGGGAG
GAAATGATCAGCGGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGGAACTA
CCGCCCTGGGAGCGCAAGCAACATCCTACCCGGCAGAGTTTAAGAACGAA
CGTTTTTGTTCTCGGGGCGCTGGGTCAGCGTTTTGATCATGCTATGGCGA
GTTGTCATCTGCTTTATCGGTATGCAGGTGTGTTCAAACGGTTGGTATTG
TTGGGGAATGAAAGCGTGGCTTTCTTGTTGCCGGAGGGGAGGAACTGGGT
GGAGCCTGATGGTAGGATGGAGGGGCCGCTGTGTGGCCTGATACCGCTGG
GAAGACAGTGTCGGGAGATTAGAACGAGGGGTTTGAAGTGGGATTTGAGA
GGGGAGAGTATGGAGTTCGGGGGGCTGGTAAGCACGTCCAATGAGGTGGT
GGGAGAGAGGAGGGAGGACGGACGGGAGGGTGTGTGGATTGAGACGTCGG
ATCCGGTGATATGGACGATGGCGTTGAAGGAGGAGTGGCGGAAAGATTTT
CTGCATGTGTGAATCACGATGATGATGAAATGATGGAAATGGGGGTATTT
TGCCGGGAGGGCCGTGGGACTGTGGCTGATGACAGCGCTGAGAACAAAGG
AAACAAATGTTACAAATTGGATGATGAAAGAGAGTGAAGGGTATTGTTAT
CAGCCTTCTGGACACCATCCTTTCGGTTTTTACAGTTTTTTACAATTTCG
CGGAACCATTCCTGGCATTCTCTCTTTTTACCCCCTTCTAGTTTCCAGAC
ACTCCTGCTTCCCTTCCTCCATCATCCCACCACCAGCAATGACGTCACGA
TTTCAACAAACTTCCCTCTCCCCACCAACTGCAAGCTCTGGTAGGCTAGA
AAGCCTGTCATCCAGACACGCATGCTCCAATACCACTTAGTCTTCCTCAA
AGTCACCAACCCCACGGTCATCTCCCCTCC

Coding sequence (CDS) from alignment at scaffold_3:226978..228707+

>mRNA_84 ID=mRNA_84|Name=jgi.p|Nanoce1779_2|229768|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_3:226978..228707+ (Nannochloropsis oceanica)
ATGAATCCCCGCTGCAGCAATAGCAGTCTTAGCAGTAGCAGCCTTAGCAG
CAGGAACAACAACAACAACAACAACAATCACAACAACAACAACAACAACA
ACAACAACAACATCCATGGAGAGGGACCCTCGCGATTGCCCGTCTTTAAT
TGGCGAAACCGGCGCGACTTTGGAGAACATGATGCCCAGGGCTTGGTAGC
CGCCACTGCTGCTGGGCAACAGTACGGTAGCGAGGACGACAGCGACGGGA
GTGATGAGGAAGGAGAGAAGGAGGAAGGGGTGGTAAACGCTTTGATCATT
CTTAATACAGACTGTGTGGGTGGAGGATTATTTTACAAGTTTTGGGCGCA
TGCGAGCGTGAGGATCTGTGCGGATGGGGGGGCAAATCGTTTATATGACG
GGTTGGGAGGGGAGGAGAGGGAGCAGTTCCTCCCTTCAGCGATAAAGGGG
GATTTGGATTCAGTGCGGCCGGAAGTGGTGGCATGGTATAAAGCGAAAGG
GTGTCGTGTGGTGAAGAACGGGGATGTGGACACCAACGACCTTGAAAAAT
GCCTTGAGCTGTTAAAGCATACAGGAGAGGGAGGAAATGATCAGCGGCAA
CAGCAGCAGCAGCAGCAGCAGCAGCAGGAACTACCGCCCTGGGAGCGCAA
GCAACATCCTACCCGGCAGAGTTTAAGAACGAACGTTTTTGTTCTCGGGG
CGCTGGGTCAGCGTTTTGATCATGCTATGGCGAGTTGTCATCTGCTTTAT
CGGTATGCAGGTGTGTTCAAACGGTTGGTATTGTTGGGGAATGAAAGCGT
GGCTTTCTTGTTGCCGGAGGGGAGGAACTGGGTGGAGCCTGATGGTAGGA
TGGAGGGGCCGCTGTGTGGCCTGATACCGCTGGGAAGACAGTGTCGGGAG
ATTAGAACGAGGGGTTTGAAGTGGGATTTGAGAGGGGAGAGTATGGAGTT
CGGGGGGCTGGTAAGCACGTCCAATGAGGTGGTGGGAGAGAGGAGGGAGG
ACGGACGGGAGGGTGTGTGGATTGAGACGTCGGATCCGGTGATATGGACG
ATGGCGTTGAAGGAGGAGTGGCGGAAAGATTTTCTGCATGTGTGA

Synonyms

Publications