jgi.p|Nanoce1779_2|626194, mRNA_8394 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|626194
Unique Name	mRNA_8394
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1476
Alignment location	scaffold_24:163820..165451 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	626280
Track	FilteredModels2
ProteinId	626194

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_24	supercontig	scaffold_24:163820..165451 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626194	gene_8394	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|626194	mRNA_8394-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8394	CDS_8394	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_24:163820..165451+
coding sequence from alignment at scaffold_24:163820..165451+

mRNA sequence

>mRNA_8394 ID=mRNA_8394|Name=jgi.p|Nanoce1779_2|626194|organism=Nannochloropsis oceanica|type=mRNA|length=1476bp
CGTCGGGAAAAGCCAGCAATTTCTGGGAAAAAGTCAGCATTCTCCGAGTG
CGTAGAATAAATGAAGCTCCCGTCATGAAGAGGCCACCGTGCGTGCGTAG
TTTTAATACTGATGTGTGGGAAAGGAAGCAAGGGGAAAAGGGTTTGGCGA
GGCACAGCGAGCTTAATCAAGCGCACTTTACCATGCCCGAACTCCCTTTC
AGTATCAGCTCAACTTGTGCCCTGGCGAACCCTACAATACATCCTCCGCA
CACCCCACGAGTAGGAGCATCAAGTCGGTGAGCAGGGACCGGGCGTGGTA
CCATATCTATTCTTCCCAGATTGGAAGCCATCCTCTACCTCCCCACCCCT
ACCTTCAGCCAGCACGACAAGCCTCCCCTCGTCCACGCGTCTGAACCCAC
CCATACAGCTCCAAAAAGTCATGGACTCGGGCCACGACTACTACATTTTG
GATGCAGAGTATGATTTCTATGGCCGCCGGTTCGCGACATGCTCTTCCGA
CCACTCCATTCGCATCTGGGATCAACAACCCAACGACCAGTGGCTCCCGT
CGGCCAAAATCCTCAAGGCAAGTCGATCCGCTATCTCGCGTCTCTCCTGG
GCCCACCCCGAGTACGGCACCCTCCTCGCCGCAGCCTCCGAGGACGCTTC
CGTCACCATCTGGGAGGAGCAAACACACCCTTCTTCCCTCCCTTCCTCGT
CCTCGTCCTCGTCTTCCTCTACTTGGGTATGTCGTGTCACATTGAAGGAG
TCTCTCCGAGGGGTGAGCACTGTGGCTTTTGCTCCCCCTTTTTTGGGCTT
GCAAATTGCAGCAGGAGCAGCCGATGGGATGGTGAGGGTATATGAAGCTA
TTGACGTCACGAACCTCGCGCACTGGCCGTTGCAAGACTCGTTTGAAGGA
GGTCGGGAGGGCGGGAGGGAGGGGGGAGTGACCTCGCTCTCTTGGAATAA
ATGCCGCTTTGATCCGCCGATGATGGTGGTGGGAGGAAGTGGGGGAGGGA
TAAAGGTGTGGGTGGGGAGGGAGGAAGGGCAGAGCGGAGGCCATGGGGGA
AGGAGGTGGGAGGTGTTGTGTGAGTTGTCGAGAGGGGGAGGGGGAGGGGG
GGAAGGTGTGCGTGACGTGGCTTGGGCACCGAAGATGGGAAGGAGCTATC
ATTTGATTGCGACGGCAGGCAGGGACAATAAATTAAGAATTCACACCTTG
AGGAGAGAGGAGGAGGAGGAGAGGGAGGGAGAGAGGCGGGGAGGGAGGAG
GAGGTGGGTGCATGATGCAGTGGAGGACACCCAGGAGATCGACGTCGGTG
CAGAAATATGGCGCGTGGAATGGAATGTCTTGGGGACGCTGTTGGCATCA
TCAGGGGAGGATGGTGTGGTGCGGCTGTGGAGGAAGGATCAGGACGGACG
GTGGGGCCTGAGCAAGGTGCTGCACCGGCCGTCGGGACGGACGAGGGGGG
AGGGCGTGGTGTTGATGAACAAGTGA

protein sequence of jgi.p|Nanoce1779_2|626194

>mRNA_8394-protein ID=mRNA_8394-protein|Name=jgi.p|Nanoce1779_2|626194|organism=Nannochloropsis oceanica|type=polypeptide|length=352bp
MDSGHDYYILDAEYDFYGRRFATCSSDHSIRIWDQQPNDQWLPSAKILKA
SRSAISRLSWAHPEYGTLLAAASEDASVTIWEEQTHPSSLPSSSSSSSSS
TWVCRVTLKESLRGVSTVAFAPPFLGLQIAAGAADGMVRVYEAIDVTNLA
HWPLQDSFEGGREGGREGGVTSLSWNKCRFDPPMMVVGGSGGGIKVWVGR
EEGQSGGHGGRRWEVLCELSRGGGGGGEGVRDVAWAPKMGRSYHLIATAG
RDNKLRIHTLRREEEEEREGERRGGRRRWVHDAVEDTQEIDVGAEIWRVE
WNVLGTLLASSGEDGVVRLWRKDQDGRWGLSKVLHRPSGRTRGEGVVLMN
K*

mRNA from alignment at scaffold_24:163820..165451+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8394 ID=mRNA_8394|Name=jgi.p|Nanoce1779_2|626194|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp|location=Sequence derived from alignment at scaffold_24:163820..165451+ (Nannochloropsis oceanica)
CGTCGGGAAAAGCCAGCAATTTCTGGGAAAAAGTCAGCATTCTCCGAGTG
CGTAGAATAAATGAAGCTCCCGTCATGAAGAGGCCACCGTGCGTGCGTAG
TTTTAATACTGATGTGTGGGAAAGGAAGCAAGGGGAAAAGGGTTTGGCGA
GGCACAGCGAGCTTAATCAAGCGCACTTTACCATGCCCGAACTCCCTTTC
AGTATCAGCTCAACTTGTGCCCTGGCGAACCCTACAATACATCCTCCGCA
CACCCCACGAGTAGGAGCATCAAGTCGGTGAGCAGGGACCGGGCGTGGTA
CCATATCTATTCTTCCCAGATTGGAAGCCATCCTCTACCTCCCCACCCCT
ACCTTCAGCCAGCACGACAAGCCTCCCCTCGTCCACGCGTCTGAACCCAC
CCATACAGCTCCAAAAAGTCATGGACTCGGGCCACGACTACTACATTTTG
GATGCAGAGTATGATTTCTATGGCCGCCGGTTCGCGACATGCTCTTCCGA
CCACTCCATTCGCATCTGGGATCAAGTAAGACCCTCCCTCCCTCCCTCTC
TCCCCCCCTCTCTCCCTCCCTCCCCCCCTTTTCACCTTACTTCTCTCACC
TTTATCCCAGCACCTTAGCTCTGATAAATTGTTTCATTTACAGACACTTG
TCCCTTCTTAACCTTTGCTCAAATATCACAGCAACCCAACGACCAGTGGC
TCCCGTCGGCCAAAATCCTCAAGGCAAGTCGATCCGCTATCTCGCGTCTC
TCCTGGGCCCACCCCGAGTACGGCACCCTCCTCGCCGCAGCCTCCGAGGA
CGCTTCCGTCACCATCTGGGAGGAGCAAACACACCCTTCTTCCCTCCCTT
CCTCGTCCTCGTCCTCGTCTTCCTCTACTTGGGTATGTCGTGTCACATTG
AAGGAGTCTCTCCGAGGGGTGAGCACTGTGGCTTTTGCTCCCCCTTTTTT
GGGCTTGCAAATTGCAGCAGGAGCAGCCGATGGGATGGTGAGGGTATATG
AAGCTATTGACGTCACGAACCTCGCGCACTGGCCGTTGCAAGACTCGTTT
GAAGGAGGTCGGGAGGGCGGGAGGGAGGGGGGAGTGACCTCGCTCTCTTG
GAATAAATGCCGCTTTGATCCGCCGATGATGGTGGTGGGAGGAAGTGGGG
GAGGGATAAAGGTGTGGGTGGGGAGGGAGGAAGGGCAGAGCGGAGGCCAT
GGGGGAAGGAGGTGGGAGGTGTTGTGTGAGTTGTCGAGAGGGGGAGGGGG
AGGGGGGGAAGGTGTGCGTGACGTGGCTTGGGCACCGAAGATGGGAAGGA
GCTATCATTTGATTGCGACGGCAGGCAGGGACAATAAATTAAGAATTCAC
ACCTTGAGGAGAGAGGAGGAGGAGGAGAGGGAGGGAGAGAGGCGGGGAGG
GAGGAGGAGGTGGGTGCATGATGCAGTGGAGGACACCCAGGAGATCGACG
TCGGTGCAGAAATATGGCGCGTGGAATGGAATGTCTTGGGGACGCTGTTG
GCATCATCAGGGGAGGATGGTGTGGTGCGGCTGTGGAGGAAGGATCAGGA
CGGACGGTGGGGCCTGAGCAAGGTGCTGCACCGGCCGTCGGGACGGACGA
GGGGGGAGGGCGTGGTGTTGATGAACAAGTGA

Coding sequence (CDS) from alignment at scaffold_24:163820..165451+

>mRNA_8394 ID=mRNA_8394|Name=jgi.p|Nanoce1779_2|626194|organism=Nannochloropsis oceanica|type=CDS|length=2112bp|location=Sequence derived from alignment at scaffold_24:163820..165451+ (Nannochloropsis oceanica)
ATGGACTCGGGCCACGACTACTACATTTTGGATGCAGAGTATGATTTCTA
TGGCCGCCGGTTCGCGACATGCTCTTCCGACCACTCCATTCGCATCTGGG
ATCAACAACCCAACGACCAGTGGCTCCCGTCGGCCAAAATCCTCAAGGCA
AGTCGATCCGCTATCTCGCGTCTCTCCTGGGCCCACCCCGAGTACGGCAC
CCTCCTCGCCGCAGCCTCCGAGGACGCTTCCGTCACCATCTGGGAGGAGC
AAACACACCCTTCTTCCCTCCCTTCCTCGTCCTCGTCCTCGTCTTCCTCT
ACTTGGGTATGTCGTGTCACATTGAAGGAGTCTCTCCGAGGGGTGAGCAC
TGTGGCTTTTGCTCCCCCTTTTTTGGGCTTGCAAATTGCAGCAGGAGCAG
CCGATGGGATGGTGAGGGTATATGAAGCTATTGACGTCACGAACCTCGCG
CACTGGCCGTTGCAAGACTCGTTTGAAGGAGGTCGGGAGGGCGGGAGGGA
GGGGGGAGTGACCTCGCTCTCTTGGAATAAATGCCGCTTTGATCCGCCGA
TGATGGTGGTGGGAGGAAGTGGGGGAGGGATAAAGGTGTGGGTGGGGAGG
GAGGAAGGGCAGAGCGGAGGCCATGGGGGAAGGAGGTGGGAGGTGTTGTG
TGAGTTGTCGAGAGGGGGAGGGGGAGGGGGGGAAGGTGTGCGTGACGTGG
CTTGGGCACCGAAGATGGGAAGGAGCTATCATTTGATTGCGACGGCAGGC
AGGGACAATAAATTAAGAATTCACACCTTGAGGAGAGAGGAGGAGGAGGA
GAGGGAGGGAGAGAGGCGGGGAGGGAGGAGGAGGTGGGTGCATGATGCAG
TGGAGGACACCCAGGAGATCGACGTCGGTGCAGAAATATGGCGCGTGGAA
TGGAATGTCTTGGGGACGCTGTTGGCATCATCAGGGGAGGATGGTGTGGT
GCGGCTGTGGAGGAAGGATCAGGACGGACGGTGGGGCCTGAGCAAGGTGC
TGCACCGGCCGTCGGGACGGACGAGGGGGGAGGGCGTGGTGTTGATGAAC
AAGTGAATGGACTCGGGCCACGACTACTACATTTTGGATGCAGAGTATGA
TTTCTATGGCCGCCGGTTCGCGACATGCTCTTCCGACCACTCCATTCGCA
TCTGGGATCAACAACCCAACGACCAGTGGCTCCCGTCGGCCAAAATCCTC
AAGGCAAGTCGATCCGCTATCTCGCGTCTCTCCTGGGCCCACCCCGAGTA
CGGCACCCTCCTCGCCGCAGCCTCCGAGGACGCTTCCGTCACCATCTGGG
AGGAGCAAACACACCCTTCTTCCCTCCCTTCCTCGTCCTCGTCCTCGTCT
TCCTCTACTTGGGTATGTCGTGTCACATTGAAGGAGTCTCTCCGAGGGGT
GAGCACTGTGGCTTTTGCTCCCCCTTTTTTGGGCTTGCAAATTGCAGCAG
GAGCAGCCGATGGGATGGTGAGGGTATATGAAGCTATTGACGTCACGAAC
CTCGCGCACTGGCCGTTGCAAGACTCGTTTGAAGGAGGTCGGGAGGGCGG
GAGGGAGGGGGGAGTGACCTCGCTCTCTTGGAATAAATGCCGCTTTGATC
CGCCGATGATGGTGGTGGGAGGAAGTGGGGGAGGGATAAAGGTGTGGGTG
GGGAGGGAGGAAGGGCAGAGCGGAGGCCATGGGGGAAGGAGGTGGGAGGT
GTTGTGTGAGTTGTCGAGAGGGGGAGGGGGAGGGGGGGAAGGTGTGCGTG
ACGTGGCTTGGGCACCGAAGATGGGAAGGAGCTATCATTTGATTGCGACG
GCAGGCAGGGACAATAAATTAAGAATTCACACCTTGAGGAGAGAGGAGGA
GGAGGAGAGGGAGGGAGAGAGGCGGGGAGGGAGGAGGAGGTGGGTGCATG
ATGCAGTGGAGGACACCCAGGAGATCGACGTCGGTGCAGAAATATGGCGC
GTGGAATGGAATGTCTTGGGGACGCTGTTGGCATCATCAGGGGAGGATGG
TGTGGTGCGGCTGTGGAGGAAGGATCAGGACGGACGGTGGGGCCTGAGCA
AGGTGCTGCACCGGCCGTCGGGACGGACGAGGGGGGAGGGCGTGGTGTTG
ATGAACAAGTGA

Synonyms

Publications