jgi.p|Nanoce1779_2|601360, mRNA_8261 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|601360
Unique Name	mRNA_8261
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1319
Alignment location	scaffold_23:218448..219963 -

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Properties


Property Name	Value
TranscriptId	601446
Track	FilteredModels2
ProteinId	601360

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_23	supercontig	scaffold_23:218448..219963 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601360	gene_8261	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|601360	mRNA_8261-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8261	CDS_8261	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_23:218448..219963-
coding sequence from alignment at scaffold_23:218448..219963-

mRNA sequence

>mRNA_8261 ID=mRNA_8261|Name=jgi.p|Nanoce1779_2|601360|organism=Nannochloropsis oceanica|type=mRNA|length=1319bp
CAGAGTAGCTTCCACCATGTCTGCCGCCAATCTTCCTAAAAAAGCAAGCA
TTGAAACCATCCTTGCTCAAGCAGGGATCCGCTACCAGGAGATTACTAGC
ATCTCCTCCCGCGATATAATTCCGCCCCTCCACCTCTCGACTACCTTTGA
ACGCGACATCGACGGAACCTACTCTAATGGATTTGTCTATTCGCGGCATG
ACCATCCCACGCGGGCTTTGTTGGAGAAAGTCATGACAGACATTGAAGAA
GGTGCCGAGTGGTCCGCTGCCTTTGCTAGCGGGATGCAAGCAGCCACTGT
GCTCCTTCAAGCTTTTGGCGCGAATGCCTATTTGATTCTACCGAATGACC
TTTACCAAGGTATCCGTATCCTCGTGCGGTCGACTTTTGAAGAGTGGGGG
TTAAGGAATGAGTGTGTAGATATGACAGACCTAGGAGCAGTAAAAGAGAT
AATGGACCGAGTATTCGCTGATGCAGGAACAAGCAGGGTCTTGGTGTGGA
TGGAGAGTCCCTCCAATCCTCTCTTGAAGGTCACTGATGTCCGGGCAATT
GTGGCCCTTGCAAGGCATTATAGCAAGAAGCACGGGAAAGATTTTTTGTC
CATCCTTGACACCACCTGGCACTCGCCCTTCCTCCTTCAAGCCCTCCTTC
CCCTCGGTATCGACATCACGTACGGAAGTGCCACCAAATTCCTCGGCGGT
CATTCCGACCTCCTGGCCGGTGTTATTACGGGTCGAAAACGCAAGGCCTT
AGTGAGCGGAGGGGGCGGAATGGTGGATCTAGAGATACCTGTACGTCACT
TGCAACAAACCATGGGAGGGGGGCTCGCGCCGTTCGATTGCTGGTTGCTT
CTGAGGGGGCTGAAGACCCTTCCTTGTCGAATGCGGACACATTGCGAGAA
CGCACAGAAATTGAGTCGATTTTTTGAGACTCACCCGCGAATCAGCGTCG
TACATTTCCCGGGGTTGGAGTCTCACCCCGGTCATGGGTTGCACAGAGCG
ATGATGAGGAAGGAAGGGATGGATGGGAGCATGCTCTCGATACAGATGAA
AGGTGAAGAGGGCGGGACGGAGGACGAGACAGCAGTGGAAGAAGAAGTGT
TTAAGGTATTGGCCAGGCTGAAGATCTTTCGGAGGGCGACCTCGTTGGGA
GCCACGGAGAGTTTGTGTGAGCATAGAAGGAGCGTGGAGGGGCCTTTGAG
TCAAACGCCGCGGAACTTGGTTAGGATTAGTGTGGGATTGGAGGGGTATG
AAGACTTGGAGGAGGACTGGCGACAGGCGTTGAGTGAAGAAGGGAGTTGA
AGAGGAAGAAAAGGAGGAG

protein sequence of jgi.p|Nanoce1779_2|601360

>mRNA_8261-protein ID=mRNA_8261-protein|Name=jgi.p|Nanoce1779_2|601360|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MSAANLPKKASIETILAQAGIRYQEITSISSRDIIPPLHLSTTFERDIDG
TYSNGFVYSRHDHPTRALLEKVMTDIEEGAEWSAAFASGMQAATVLLQAF
GANAYLILPNDLYQGIRILVRSTFEEWGLRNECVDMTDLGAVKEIMDRVF
ADAGTSRVLVWMESPSNPLLKVTDVRAIVALARHYSKKHGKDFLSILDTT
WHSPFLLQALLPLGIDITYGSATKFLGGHSDLLAGVITGRKRKALVSGGG
GMVDLEIPVRHLQQTMGGGLAPFDCWLLLRGLKTLPCRMRTHCENAQKLS
RFFETHPRISVVHFPGLESHPGHGLHRAMMRKEGMDGSMLSIQMKGEEGG
TEDETAVEEEVFKVLARLKIFRRATSLGATESLCEHRRSVEGPLSQTPRN
LVRISVGLEGYEDLEEDWRQALSEEGS*

mRNA from alignment at scaffold_23:218448..219963-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8261 ID=mRNA_8261|Name=jgi.p|Nanoce1779_2|601360|organism=Nannochloropsis oceanica|type=mRNA|length=1516bp|location=Sequence derived from alignment at scaffold_23:218448..219963- (Nannochloropsis oceanica)
CAGAGTAGCTTCCACCATGTCTGCCGCCAATCTTCCTAAAAAAGCAAGCA
TTGAAACCATCCTTGCTCAAGCAGGGATCCGCTACCAGGAGATTACTAGC
ATCTCCTCCCGCGATATAATTCCGCCCCTCCACCTCTCGACTACCTTTGA
ACGCGACATCGACGGAACCTACTCTAATGGATTTGTCTATTCGCGGCATG
ACCATCCCACGCGGGCTTTGTTGGAGAAAGGTGGGTCAAATGCAGAGAGA
AGAAAGATACATTTCTCTAACCCTTCCCTCCCTCCCTCCCTCCCTCTTTT
CTTCCTTCCAGTCATGACAGACATTGAAGAAGGTGCCGAGTGGTCCGCTG
CCTTTGCTAGCGGGATGCAAGCAGCCACTGTGCTCCTTCAAGCTTTTGGC
GCGAATGCCTATTTGATTCTACCGAATGACCTTTACCAAGGTATCCGTAT
CCTCGTGCGGTCGACTTTTGAAGAGTGGGGGTTAAGGAATGAGTGTGTAG
ATATGACAGACCTAGGAGCAGTAAAAGAGATAATGGACCGAGTATTCGCT
GATGCAGGAACAAGCAGGGTCTTGGTGTGGATGGAGAGTCCCTCCAATCC
TCTCTTGAAGGTAGGCAAGGAGGGAGGGAAGAAGGAAGGAAGAGGAAGTG
AGGGCGGAAATAAAATAGACGAAAGGCAGCCATGCGTCATTTTCTCCTTC
TCCTTCTCCCTCATTCCTTTCTTCAGGTCACTGATGTCCGGGCAATTGTG
GCCCTTGCAAGGCATTATAGCAAGAAGCACGGGAAAGATTTTTTGTCCAT
CCTTGACACCACCTGGCACTCGCCCTTCCTCCTTCAAGCCCTCCTTCCCC
TCGGTATCGACATCACGTACGGAAGTGCCACCAAATTCCTCGGCGGTCAT
TCCGACCTCCTGGCCGGTGTTATTACGGGTCGAAAACGCAAGGCCTTAGT
GAGCGGAGGGGGCGGAATGGTGGATCTAGAGATACCTGTACGTCACTTGC
AACAAACCATGGGAGGGGGGCTCGCGCCGTTCGATTGCTGGTTGCTTCTG
AGGGGGCTGAAGACCCTTCCTTGTCGAATGCGGACACATTGCGAGAACGC
ACAGAAATTGAGTCGATTTTTTGAGACTCACCCGCGAATCAGCGTCGTAC
ATTTCCCGGGGTTGGAGTCTCACCCCGGTCATGGGTTGCACAGAGCGATG
ATGAGGAAGGAAGGGATGGATGGGAGCATGCTCTCGATACAGATGAAAGG
TGAAGAGGGCGGGACGGAGGACGAGACAGCAGTGGAAGAAGAAGTGTTTA
AGGTATTGGCCAGGCTGAAGATCTTTCGGAGGGCGACCTCGTTGGGAGCC
ACGGAGAGTTTGTGTGAGCATAGAAGGAGCGTGGAGGGGCCTTTGAGTCA
AACGCCGCGGAACTTGGTTAGGATTAGTGTGGGATTGGAGGGGTATGAAG
ACTTGGAGGAGGACTGGCGACAGGCGTTGAGTGAAGAAGGGAGTTGAAGA
GGAAGAAAAGGAGGAG

Coding sequence (CDS) from alignment at scaffold_23:218448..219963-

>mRNA_8261 ID=mRNA_8261|Name=jgi.p|Nanoce1779_2|601360|organism=Nannochloropsis oceanica|type=CDS|length=3852bp|location=Sequence derived from alignment at scaffold_23:218448..219963- (Nannochloropsis oceanica)
GTCACTGATGTCCGGGCAATTGTGGCCCTTGCAAGGCATTATAGCAAGAA
GCACGGGAAAGATTTTTTGTCCATCCTTGACACCACCTGGCACTCGCCCT
TCCTCCTTCAAGCCCTCCTTCCCCTCGGTATCGACATCACGTACGGAAGT
GCCACCAAATTCCTCGGCGGTCATTCCGACCTCCTGGCCGGTGTTATTAC
GGGTCGAAAACGCAAGGCCTTAGTGAGCGGAGGGGGCGGAATGGTGGATC
TAGAGATACCTGTACGTCACTTGCAACAAACCATGGGAGGGGGGCTCGCG
CCGTTCGATTGCTGGTTGCTTCTGAGGGGGCTGAAGACCCTTCCTTGTCG
AATGCGGACACATTGCGAGAACGCACAGAAATTGAGTCGATTTTTTGAGA
CTCACCCGCGAATCAGCGTCGTACATTTCCCGGGGTTGGAGTCTCACCCC
GGTCATGGGTTGCACAGAGCGATGATGAGGAAGGAAGGGATGGATGGGAG
CATGCTCTCGATACAGATGAAAGGTGAAGAGGGCGGGACGGAGGACGAGA
CAGCAGTGGAAGAAGAAGTGTTTAAGGTATTGGCCAGGCTGAAGATCTTT
CGGAGGGCGACCTCGTTGGGAGCCACGGAGAGTTTGTGTGAGCATAGAAG
GAGCGTGGAGGGGCCTTTGAGTCAAACGCCGCGGAACTTGGTTAGGATTA
GTGTGGGATTGGAGGGGTATGAAGACTTGGAGGAGGACTGGCGACAGGCG
TTGAGTGAAGAAGGGAGTTGATCATGACAGACATTGAAGAAGGTGCCGAG
TGGTCCGCTGCCTTTGCTAGCGGGATGCAAGCAGCCACTGTGCTCCTTCA
AGCTTTTGGCGCGAATGCCTATTTGATTCTACCGAATGACCTTTACCAAG
GTATCCGTATCCTCGTGCGGTCGACTTTTGAAGAGTGGGGGTTAAGGAAT
GAGTGTGTAGATATGACAGACCTAGGAGCAGTAAAAGAGATAATGGACCG
AGTATTCGCTGATGCAGGAACAAGCAGGGTCTTGGTGTGGATGGAGAGTC
CCTCCAATCCTCTCTTGAAGATGTCTGCCGCCAATCTTCCTAAAAAAGCA
AGCATTGAAACCATCCTTGCTCAAGCAGGGATCCGCTACCAGGAGATTAC
TAGCATCTCCTCCCGCGATATAATTCCGCCCCTCCACCTCTCGACTACCT
TTGAACGCGACATCGACGGAACCTACTCTAATGGATTTGTCTATTCGCGG
CATGACCATCCCACGCGGGCTTTGTTGGAGAAAGGTCACTGATGTCCGGG
CAATTGTGGCCCTTGCAAGGCATTATAGCAAGAAGCACGGGAAAGATTTT
TTGTCCATCCTTGACACCACCTGGCACTCGCCCTTCCTCCTTCAAGCCCT
CCTTCCCCTCGGTATCGACATCACGTACGGAAGTGCCACCAAATTCCTCG
GCGGTCATTCCGACCTCCTGGCCGGTGTTATTACGGGTCGAAAACGCAAG
GCCTTAGTGAGCGGAGGGGGCGGAATGGTGGATCTAGAGATACCTGTACG
TCACTTGCAACAAACCATGGGAGGGGGGCTCGCGCCGTTCGATTGCTGGT
TGCTTCTGAGGGGGCTGAAGACCCTTCCTTGTCGAATGCGGACACATTGC
GAGAACGCACAGAAATTGAGTCGATTTTTTGAGACTCACCCGCGAATCAG
CGTCGTACATTTCCCGGGGTTGGAGTCTCACCCCGGTCATGGGTTGCACA
GAGCGATGATGAGGAAGGAAGGGATGGATGGGAGCATGCTCTCGATACAG
ATGAAAGGTGAAGAGGGCGGGACGGAGGACGAGACAGCAGTGGAAGAAGA
AGTGTTTAAGGTATTGGCCAGGCTGAAGATCTTTCGGAGGGCGACCTCGT
TGGGAGCCACGGAGAGTTTGTGTGAGCATAGAAGGAGCGTGGAGGGGCCT
TTGAGTCAAACGCCGCGGAACTTGGTTAGGATTAGTGTGGGATTGGAGGG
GTATGAAGACTTGGAGGAGGACTGGCGACAGGCGTTGAGTGAAGAAGGGA
GTTGATCATGACAGACATTGAAGAAGGTGCCGAGTGGTCCGCTGCCTTTG
CTAGCGGGATGCAAGCAGCCACTGTGCTCCTTCAAGCTTTTGGCGCGAAT
GCCTATTTGATTCTACCGAATGACCTTTACCAAGGTATCCGTATCCTCGT
GCGGTCGACTTTTGAAGAGTGGGGGTTAAGGAATGAGTGTGTAGATATGA
CAGACCTAGGAGCAGTAAAAGAGATAATGGACCGAGTATTCGCTGATGCA
GGAACAAGCAGGGTCTTGGTGTGGATGGAGAGTCCCTCCAATCCTCTCTT
GAAGATGTCTGCCGCCAATCTTCCTAAAAAAGCAAGCATTGAAACCATCC
TTGCTCAAGCAGGGATCCGCTACCAGGAGATTACTAGCATCTCCTCCCGC
GATATAATTCCGCCCCTCCACCTCTCGACTACCTTTGAACGCGACATCGA
CGGAACCTACTCTAATGGATTTGTCTATTCGCGGCATGACCATCCCACGC
GGGCTTTGTTGGAGAAAGGTCACTGATGTCCGGGCAATTGTGGCCCTTGC
AAGGCATTATAGCAAGAAGCACGGGAAAGATTTTTTGTCCATCCTTGACA
CCACCTGGCACTCGCCCTTCCTCCTTCAAGCCCTCCTTCCCCTCGGTATC
GACATCACGTACGGAAGTGCCACCAAATTCCTCGGCGGTCATTCCGACCT
CCTGGCCGGTGTTATTACGGGTCGAAAACGCAAGGCCTTAGTGAGCGGAG
GGGGCGGAATGGTGGATCTAGAGATACCTGTACGTCACTTGCAACAAACC
ATGGGAGGGGGGCTCGCGCCGTTCGATTGCTGGTTGCTTCTGAGGGGGCT
GAAGACCCTTCCTTGTCGAATGCGGACACATTGCGAGAACGCACAGAAAT
TGAGTCGATTTTTTGAGACTCACCCGCGAATCAGCGTCGTACATTTCCCG
GGGTTGGAGTCTCACCCCGGTCATGGGTTGCACAGAGCGATGATGAGGAA
GGAAGGGATGGATGGGAGCATGCTCTCGATACAGATGAAAGGTGAAGAGG
GCGGGACGGAGGACGAGACAGCAGTGGAAGAAGAAGTGTTTAAGGTATTG
GCCAGGCTGAAGATCTTTCGGAGGGCGACCTCGTTGGGAGCCACGGAGAG
TTTGTGTGAGCATAGAAGGAGCGTGGAGGGGCCTTTGAGTCAAACGCCGC
GGAACTTGGTTAGGATTAGTGTGGGATTGGAGGGGTATGAAGACTTGGAG
GAGGACTGGCGACAGGCGTTGAGTGAAGAAGGGAGTTGATCATGACAGAC
ATTGAAGAAGGTGCCGAGTGGTCCGCTGCCTTTGCTAGCGGGATGCAAGC
AGCCACTGTGCTCCTTCAAGCTTTTGGCGCGAATGCCTATTTGATTCTAC
CGAATGACCTTTACCAAGGTATCCGTATCCTCGTGCGGTCGACTTTTGAA
GAGTGGGGGTTAAGGAATGAGTGTGTAGATATGACAGACCTAGGAGCAGT
AAAAGAGATAATGGACCGAGTATTCGCTGATGCAGGAACAAGCAGGGTCT
TGGTGTGGATGGAGAGTCCCTCCAATCCTCTCTTGAAGATGTCTGCCGCC
AATCTTCCTAAAAAAGCAAGCATTGAAACCATCCTTGCTCAAGCAGGGAT
CCGCTACCAGGAGATTACTAGCATCTCCTCCCGCGATATAATTCCGCCCC
TCCACCTCTCGACTACCTTTGAACGCGACATCGACGGAACCTACTCTAAT
GGATTTGTCTATTCGCGGCATGACCATCCCACGCGGGCTTTGTTGGAGAA
AG

Synonyms

Publications