jgi.p|Nanoce1779_2|602793, mRNA_8188 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602793
Unique NamemRNA_8188
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length510
Alignment locationscaffold_25:379291..380494 -

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Properties
Property NameValue
TranscriptId602879
TrackFilteredModels2
ProteinId602793
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:379291..380494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602793gene_8188Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602793mRNA_8188-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8188CDS_8188Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8188 ID=mRNA_8188|Name=jgi.p|Nanoce1779_2|602793|organism=Nannochloropsis oceanica|type=mRNA|length=510bp
CAGTCAAGGCAATGGCAAGGTGCGTGGCAATTATTCGTGGTGCCCCCGGT
GACATGGAGATGTCCATTCAGGGGTTCATTCGCTTCGAGCAGGCATCAGA
AACGACGCCCACGATCATTGACGGCGTCATCACGGGCTTGGCACCCGGAC
GACATGGTCTGCACGTCCACACCTTCGGAGATTTCTCTGAGGGTCTTGCA
GGAGCAGGTGGGATCTTCAATCCGTTCGGCAAGGCTCACGGGGCACCAGA
TGATGAAGAGCGCATGTCGGGAGACTTGGGTAACGTGGAGGCCAACGCAG
AGGGGAAGGCAGAGTTTCACCTGGAGGATAAGCACGTCCGCATTATAGGC
GCTCATTCTGTCATTGGGCGCTCGGTGGTTGTCAAGGCGCAGGAAGACGA
CCTTGGACGGGGTGGGCAGGACCAGTCGTTGGTCACGGGGAACTCGGGGC
CACGCATCGCCGGTGGTGTGATTGGAATTGCACCCTCGATGTGAAGGGGG
GGGGGAGGGG
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protein sequence of jgi.p|Nanoce1779_2|602793

>mRNA_8188-protein ID=mRNA_8188-protein|Name=jgi.p|Nanoce1779_2|602793|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MARCVAIIRGAPGDMEMSIQGFIRFEQASETTPTIIDGVITGLAPGRHGL
HVHTFGDFSEGLAGAGGIFNPFGKAHGAPDDEERMSGDLGNVEANAEGKA
EFHLEDKHVRIIGAHSVIGRSVVVKAQEDDLGRGGQDQSLVTGNSGPRIA
GGVIGIAPSM*
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mRNA from alignment at scaffold_25:379291..380494-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8188 ID=mRNA_8188|Name=jgi.p|Nanoce1779_2|602793|organism=Nannochloropsis oceanica|type=mRNA|length=1204bp|location=Sequence derived from alignment at scaffold_25:379291..380494- (Nannochloropsis oceanica)
CAGTCAAGGCAATGGCAAGGTGCGTGGCAATTATTCGTGGTGCCCCCGGT
GACATGGAGATGTCCATTCAGGGGTTCATTCGCTTCGAGCAGGTAGGCGG
GAGGAAGGAAGGGGGGGAGGGCCAGGAGGGAGGTAGGACAAGGCATTACC
TCGGTATTTATCCACGCACTGCACATTTTAACCTGACACAGGCATCAGAA
ACGACGCCCACGATCATTGACGGCGTCATCACGGGCTTGGCACCCGTAAG
TAGATTACTTCCTCCTTCCCCCCTTCCCTCCCTCCATCCTTCTGCTCACC
CTCCCCTCCCTCACCTCTGCCTCACCACCATGACACATACAGGGACGACA
TGGTCTGCACGTCCACACCTTCGGAGATTTCTCTGAGGGTCTTGCAGGAG
CAGGTACGCTTGTTTTTACTCTCCTGTCCCCCCCACTCTCTCCTTCCTCG
TCCTTCCGTGGAACAGATTTACGACCTCTCCCTCCTTCCCTCCCTCCCTC
CCCTTCTCCCTATCAGGTGGGATCTTCAATCCGTTCGGCAAGGCTCACGG
GGCACCAGATGATGAAGAGCGCATGTCGGGAGACTTGGGTAACGTGGAGG
CCAACGCAGAGGGGAAGGCAGAGTTTCACCTGGAGGTGAGGCAGGGAAGG
AGGGAGAGACCGAGGGAAGGAAAGAAAGTGGATTGAAATGAAGGGTGAGG
GGGGATTCGCGTCGATGGACTTGGCACAGGCCAAGTCGGGAAATGAGGAG
TCGAGGATTCTTTTCATACATGGCCATCGTCGATATCACAGTCCTCATCG
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTCATATGTCCCTCCC
CTCTTCCCTCCATGATCCTTCTCTCCTCTTTAGGATAAGCACGTCCGCAT
TATAGGCGCTCATTCTGTCATTGGGCGCTCGGTGGTTGTCAAGGCGCAGG
AAGACGACCTTGGACGGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGG
GATCGGAGGATACCTATGTGGGGATGATCGTCGCTCTCTGCGGCTCAACT
TATATCCTCCCTTGCCTCCCTCACTCCGTTCGCCTCTCCCTTGTTCCTGC
GTAGGGTGGGCAGGACCAGTCGTTGGTCACGGGGAACTCGGGGCCACGCA
TCGCCGGTGGTGTGATTGGAATTGCACCCTCGATGTGAAGGGGGGGGGGA
GGGG
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Coding sequence (CDS) from alignment at scaffold_25:379291..380494-

>mRNA_8188 ID=mRNA_8188|Name=jgi.p|Nanoce1779_2|602793|organism=Nannochloropsis oceanica|type=CDS|length=2898bp|location=Sequence derived from alignment at scaffold_25:379291..380494- (Nannochloropsis oceanica)
GGTGGGCAGGACCAGTCGTTGGTCACGGGGAACTCGGGGCCACGCATCGC
CGGTGGTGTGATTGGAATTGCACCCTCGATGTGAGATAAGCACGTCCGCA
TTATAGGCGCTCATTCTGTCATTGGGCGCTCGGTGGTTGTCAAGGCGCAG
GAAGACGACCTTGGACGGGTGGGATCTTCAATCCGTTCGGCAAGGCTCAC
GGGGCACCAGATGATGAAGAGCGCATGTCGGGAGACTTGGGTAACGTGGA
GGCCAACGCAGAGGGGAAGGCAGAGTTTCACCTGGAGGGACGACATGGTC
TGCACGTCCACACCTTCGGAGATTTCTCTGAGGGTCTTGCAGGAGCAGGC
ATCAGAAACGACGCCCACGATCATTGACGGCGTCATCACGGGCTTGGCAC
CCATGGCAAGGTGCGTGGCAATTATTCGTGGTGCCCCCGGTGACATGGAG
ATGTCCATTCAGGGGTTCATTCGCTTCGAGCAGGGTGGGCAGGACCAGTC
GTTGGTCACGGGGAACTCGGGGCCACGCATCGCCGGTGGTGTGATTGGAA
TTGCACCCTCGATGTGAGATAAGCACGTCCGCATTATAGGCGCTCATTCT
GTCATTGGGCGCTCGGTGGTTGTCAAGGCGCAGGAAGACGACCTTGGACG
GGTGGGATCTTCAATCCGTTCGGCAAGGCTCACGGGGCACCAGATGATGA
AGAGCGCATGTCGGGAGACTTGGGTAACGTGGAGGCCAACGCAGAGGGGA
AGGCAGAGTTTCACCTGGAGGGACGACATGGTCTGCACGTCCACACCTTC
GGAGATTTCTCTGAGGGTCTTGCAGGAGCAGGCATCAGAAACGACGCCCA
CGATCATTGACGGCGTCATCACGGGCTTGGCACCCATGGCAAGGTGCGTG
GCAATTATTCGTGGTGCCCCCGGTGACATGGAGATGTCCATTCAGGGGTT
CATTCGCTTCGAGCAGGGTGGGCAGGACCAGTCGTTGGTCACGGGGAACT
CGGGGCCACGCATCGCCGGTGGTGTGATTGGAATTGCACCCTCGATGTGA
GATAAGCACGTCCGCATTATAGGCGCTCATTCTGTCATTGGGCGCTCGGT
GGTTGTCAAGGCGCAGGAAGACGACCTTGGACGGGTGGGATCTTCAATCC
GTTCGGCAAGGCTCACGGGGCACCAGATGATGAAGAGCGCATGTCGGGAG
ACTTGGGTAACGTGGAGGCCAACGCAGAGGGGAAGGCAGAGTTTCACCTG
GAGGGACGACATGGTCTGCACGTCCACACCTTCGGAGATTTCTCTGAGGG
TCTTGCAGGAGCAGGCATCAGAAACGACGCCCACGATCATTGACGGCGTC
ATCACGGGCTTGGCACCCATGGCAAGGTGCGTGGCAATTATTCGTGGTGC
CCCCGGTGACATGGAGATGTCCATTCAGGGGTTCATTCGCTTCGAGCAGG
GTGGGCAGGACCAGTCGTTGGTCACGGGGAACTCGGGGCCACGCATCGCC
GGTGGTGTGATTGGAATTGCACCCTCGATGTGAGATAAGCACGTCCGCAT
TATAGGCGCTCATTCTGTCATTGGGCGCTCGGTGGTTGTCAAGGCGCAGG
AAGACGACCTTGGACGGGTGGGATCTTCAATCCGTTCGGCAAGGCTCACG
GGGCACCAGATGATGAAGAGCGCATGTCGGGAGACTTGGGTAACGTGGAG
GCCAACGCAGAGGGGAAGGCAGAGTTTCACCTGGAGGGACGACATGGTCT
GCACGTCCACACCTTCGGAGATTTCTCTGAGGGTCTTGCAGGAGCAGGCA
TCAGAAACGACGCCCACGATCATTGACGGCGTCATCACGGGCTTGGCACC
CATGGCAAGGTGCGTGGCAATTATTCGTGGTGCCCCCGGTGACATGGAGA
TGTCCATTCAGGGGTTCATTCGCTTCGAGCAGGGTGGGCAGGACCAGTCG
TTGGTCACGGGGAACTCGGGGCCACGCATCGCCGGTGGTGTGATTGGAAT
TGCACCCTCGATGTGAGATAAGCACGTCCGCATTATAGGCGCTCATTCTG
TCATTGGGCGCTCGGTGGTTGTCAAGGCGCAGGAAGACGACCTTGGACGG
GTGGGATCTTCAATCCGTTCGGCAAGGCTCACGGGGCACCAGATGATGAA
GAGCGCATGTCGGGAGACTTGGGTAACGTGGAGGCCAACGCAGAGGGGAA
GGCAGAGTTTCACCTGGAGGGACGACATGGTCTGCACGTCCACACCTTCG
GAGATTTCTCTGAGGGTCTTGCAGGAGCAGGCATCAGAAACGACGCCCAC
GATCATTGACGGCGTCATCACGGGCTTGGCACCCATGGCAAGGTGCGTGG
CAATTATTCGTGGTGCCCCCGGTGACATGGAGATGTCCATTCAGGGGTTC
ATTCGCTTCGAGCAGGGTGGGCAGGACCAGTCGTTGGTCACGGGGAACTC
GGGGCCACGCATCGCCGGTGGTGTGATTGGAATTGCACCCTCGATGTGAG
ATAAGCACGTCCGCATTATAGGCGCTCATTCTGTCATTGGGCGCTCGGTG
GTTGTCAAGGCGCAGGAAGACGACCTTGGACGGGTGGGATCTTCAATCCG
TTCGGCAAGGCTCACGGGGCACCAGATGATGAAGAGCGCATGTCGGGAGA
CTTGGGTAACGTGGAGGCCAACGCAGAGGGGAAGGCAGAGTTTCACCTGG
AGGGACGACATGGTCTGCACGTCCACACCTTCGGAGATTTCTCTGAGGGT
CTTGCAGGAGCAGGCATCAGAAACGACGCCCACGATCATTGACGGCGTCA
TCACGGGCTTGGCACCCATGGCAAGGTGCGTGGCAATTATTCGTGGTGCC
CCCGGTGACATGGAGATGTCCATTCAGGGGTTCATTCGCTTCGAGCAG
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Synonyms
Publications