jgi.p|Nanoce1779_2|602475, mRNA_8098 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602475
Unique Name	mRNA_8098
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2095
Alignment location	scaffold_25:144576..146670 -

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Properties


Property Name	Value
TranscriptId	602561
Track	FilteredModels2
ProteinId	602475

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:144576..146670 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602475	gene_8098	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602475	mRNA_8098-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8098	CDS_8098	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:144576..146670-
coding sequence from alignment at scaffold_25:144576..146670-

mRNA sequence

>mRNA_8098 ID=mRNA_8098|Name=jgi.p|Nanoce1779_2|602475|organism=Nannochloropsis oceanica|type=mRNA|length=2095bp
ACAGAAAAAGAGGCGCCCCCAAAAACACAGCAATGTCACGCGGGCTGAAT
TATAACCAGGCCGCAGGCCTTCAAGGCATGCTCAAGGAAGGCACGAAAAG
CATGGAGGGGGTGGACGAGGCCGTCATCCGCAACATCGAAGCCGCTAAGC
AACTCGCCCGCATCTGCTCCTCCTCAATGGGACCGAATGGGCTCAAGAAG
CTCGTCGTGAACCACCTAGAGAAGATCATCGTCACCAGCGACTGTGCCAC
CATCCTGAAGGAATTGGAAGTGCAACATCCTGCTGCGAAAATGCTCGTGT
TGGCCGCCATGATGCAAGAAAAAGAATGCGGGGACGCGACCAACCTCACC
GTGTCCTTCGCAGGAGAGCTCCTGAAAAAAGCTGAAGACCTTCTCCACAC
CGGTTTGCACCCAAGTGAAATCGTTGCCGGATACCGCACTGCTTTCGAAA
AGGCCATGGATATCCTCCCTACCCTCACGGTGCACACCGTGGACGACCCC
CGTGATGCTTTACAAGTCTCTCATGTCTTGGAGTCGGTTCTTGGGACGAA
ATACTTTGGTTTCCAAGCTACTTTGGCCCCCTACGTCACACAGGCTTGCC
AAGCCGTCATGCCTTCGTTGCCGAAGAAACCGTCGTTGAATGTAGACTCG
GTCAGGGTATGCAAATTGCAAGGGGGGACGATAGAAGACAGTTTAGTGAT
GAAGGGCATTGTGGTGTCCAGGAGCACGGAGGGCACGATTAAAAGGGCCC
TCAAGGCGAAAGTGGCCGTGTATGGCTGTGGGATAGAGGCGTCTTCGACA
GAAACGAAGGGAACAGTGCTGATTCGAAATGCGGAGGATTTGTTGAATTA
TAACAAGGGGGAGGAGAAGCTGATGGAGGACATCATTAAAGGGATTGCCG
AGAGCGGGATAGCAGTAGTGGTCACAGGCGGGTCGATCAGCGAAATGGCT
TTGCACTTCCTTGAGCGATACAAGTTGATGGTTGTCAAGATTCCATCCAA
GTGGGAGTTGAGGCGGTTGTGCGGTGCTGTGAATGCGACTGCGTTGGTGA
GGTTAGGCCCCCCCACGGCGGAGGAGGCGGGCTTTGTGGATGTGGTGGAG
GTGAGGGAGGTGGGGGGTAGGAAGATCACGGTGTTTGAGCAAAATGCGGA
GGAGAGTCGGGTGGCGAGTATCATCTTGAGGGCGAGCACGCATAACGTGC
TGGAGGACTTGGAGAGGGCGGTTGATGATGGGGTGAACATGGTGAAGGTC
TTGTGCACGGACGGTCGGTTCTTGCCGGGAGCGGGCGCCGTGGAGATCGA
GCTGGCGAGACGGATCTATAAGCTGGCGGATGCTACAACGGGGCTTGATC
AGTACGCGATGAGGAAGTTCGCGGAGGCCTTGGAAATAGTGCCAAGGACC
CTGGCAGAGAGCTCGGGGCAGGACGCGACTGATACGGTGGCGGCCCTGTA
CGCCGAGCACGAGAAGGGGAATGTCACTGCAGGGGTGGATGTGGAAGGGA
CTGGGGTGAAGGTAGGGGCAGAGGGAGTGCAGGGTGTGTGCGACTCGTTG
TTCGTAAAGGACTCGGCGTTGCGGTTGGCGGTGGATGCGGCGCTGACGGT
GTTGAGGGTTGACCAGATTATCATGTCCAAGCCGGCAGGAGGGCCCAAGC
CTCCCGCCGGGGGGGGAGGAGATGAGGAATAAGGACCTACCTCCCTCCCC
AGCCCCCCCCTTTCCTCTCCTCCCTTCTTTTGGGCATGCAGGAGAGGGAG
GATGAGAGGAAGATTGGACGAATCGGCCTGAAGCACTTGTCGGTTTGGAG
AGAGAAGGGAAGAGAAGGGCGAAGGAGGAAGAAAAGCAGCAGCAAGAAGA
GCAGCTTCATTAAAGGAGCACCTTAAAAAATTGAAGGAGAAGCAGGGAAG
TTAAGTTGGCATGGTGCATGATTGTGTGGTGTGGGGTAGCGTGATACTGC
TGCCAGATAAGGAAGGTGAGTGTGGAGGAGTGGAAGAGAGAAGAAAATGG
CAAGATAAGGTAGTCAAGGCACTGCAAACCGCAAACAAGATAAAAAAAAG
AGGGAGTTCCAGAAGAAAAAGAATAAAAACAAAATCAATCTTTTA

protein sequence of jgi.p|Nanoce1779_2|602475

>mRNA_8098-protein ID=mRNA_8098-protein|Name=jgi.p|Nanoce1779_2|602475|organism=Nannochloropsis oceanica|type=polypeptide|length=550bp
MSRGLNYNQAAGLQGMLKEGTKSMEGVDEAVIRNIEAAKQLARICSSSMG
PNGLKKLVVNHLEKIIVTSDCATILKELEVQHPAAKMLVLAAMMQEKECG
DATNLTVSFAGELLKKAEDLLHTGLHPSEIVAGYRTAFEKAMDILPTLTV
HTVDDPRDALQVSHVLESVLGTKYFGFQATLAPYVTQACQAVMPSLPKKP
SLNVDSVRVCKLQGGTIEDSLVMKGIVVSRSTEGTIKRALKAKVAVYGCG
IEASSTETKGTVLIRNAEDLLNYNKGEEKLMEDIIKGIAESGIAVVVTGG
SISEMALHFLERYKLMVVKIPSKWELRRLCGAVNATALVRLGPPTAEEAG
FVDVVEVREVGGRKITVFEQNAEESRVASIILRASTHNVLEDLERAVDDG
VNMVKVLCTDGRFLPGAGAVEIELARRIYKLADATTGLDQYAMRKFAEAL
EIVPRTLAESSGQDATDTVAALYAEHEKGNVTAGVDVEGTGVKVGAEGVQ
GVCDSLFVKDSALRLAVDAALTVLRVDQIIMSKPAGGPKPPAGGGGDEE*

mRNA from alignment at scaffold_25:144576..146670-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8098 ID=mRNA_8098|Name=jgi.p|Nanoce1779_2|602475|organism=Nannochloropsis oceanica|type=mRNA|length=2095bp|location=Sequence derived from alignment at scaffold_25:144576..146670- (Nannochloropsis oceanica)
ACAGAAAAAGAGGCGCCCCCAAAAACACAGCAATGTCACGCGGGCTGAAT
TATAACCAGGCCGCAGGCCTTCAAGGCATGCTCAAGGAAGGCACGAAAAG
CATGGAGGGGGTGGACGAGGCCGTCATCCGCAACATCGAAGCCGCTAAGC
AACTCGCCCGCATCTGCTCCTCCTCAATGGGACCGAATGGGCTCAAGAAG
CTCGTCGTGAACCACCTAGAGAAGATCATCGTCACCAGCGACTGTGCCAC
CATCCTGAAGGAATTGGAAGTGCAACATCCTGCTGCGAAAATGCTCGTGT
TGGCCGCCATGATGCAAGAAAAAGAATGCGGGGACGCGACCAACCTCACC
GTGTCCTTCGCAGGAGAGCTCCTGAAAAAAGCTGAAGACCTTCTCCACAC
CGGTTTGCACCCAAGTGAAATCGTTGCCGGATACCGCACTGCTTTCGAAA
AGGCCATGGATATCCTCCCTACCCTCACGGTGCACACCGTGGACGACCCC
CGTGATGCTTTACAAGTCTCTCATGTCTTGGAGTCGGTTCTTGGGACGAA
ATACTTTGGTTTCCAAGCTACTTTGGCCCCCTACGTCACACAGGCTTGCC
AAGCCGTCATGCCTTCGTTGCCGAAGAAACCGTCGTTGAATGTAGACTCG
GTCAGGGTATGCAAATTGCAAGGGGGGACGATAGAAGACAGTTTAGTGAT
GAAGGGCATTGTGGTGTCCAGGAGCACGGAGGGCACGATTAAAAGGGCCC
TCAAGGCGAAAGTGGCCGTGTATGGCTGTGGGATAGAGGCGTCTTCGACA
GAAACGAAGGGAACAGTGCTGATTCGAAATGCGGAGGATTTGTTGAATTA
TAACAAGGGGGAGGAGAAGCTGATGGAGGACATCATTAAAGGGATTGCCG
AGAGCGGGATAGCAGTAGTGGTCACAGGCGGGTCGATCAGCGAAATGGCT
TTGCACTTCCTTGAGCGATACAAGTTGATGGTTGTCAAGATTCCATCCAA
GTGGGAGTTGAGGCGGTTGTGCGGTGCTGTGAATGCGACTGCGTTGGTGA
GGTTAGGCCCCCCCACGGCGGAGGAGGCGGGCTTTGTGGATGTGGTGGAG
GTGAGGGAGGTGGGGGGTAGGAAGATCACGGTGTTTGAGCAAAATGCGGA
GGAGAGTCGGGTGGCGAGTATCATCTTGAGGGCGAGCACGCATAACGTGC
TGGAGGACTTGGAGAGGGCGGTTGATGATGGGGTGAACATGGTGAAGGTC
TTGTGCACGGACGGTCGGTTCTTGCCGGGAGCGGGCGCCGTGGAGATCGA
GCTGGCGAGACGGATCTATAAGCTGGCGGATGCTACAACGGGGCTTGATC
AGTACGCGATGAGGAAGTTCGCGGAGGCCTTGGAAATAGTGCCAAGGACC
CTGGCAGAGAGCTCGGGGCAGGACGCGACTGATACGGTGGCGGCCCTGTA
CGCCGAGCACGAGAAGGGGAATGTCACTGCAGGGGTGGATGTGGAAGGGA
CTGGGGTGAAGGTAGGGGCAGAGGGAGTGCAGGGTGTGTGCGACTCGTTG
TTCGTAAAGGACTCGGCGTTGCGGTTGGCGGTGGATGCGGCGCTGACGGT
GTTGAGGGTTGACCAGATTATCATGTCCAAGCCGGCAGGAGGGCCCAAGC
CTCCCGCCGGGGGGGGAGGAGATGAGGAATAAGGACCTACCTCCCTCCCC
AGCCCCCCCCTTTCCTCTCCTCCCTTCTTTTGGGCATGCAGGAGAGGGAG
GATGAGAGGAAGATTGGACGAATCGGCCTGAAGCACTTGTCGGTTTGGAG
AGAGAAGGGAAGAGAAGGGCGAAGGAGGAAGAAAAGCAGCAGCAAGAAGA
GCAGCTTCATTAAAGGAGCACCTTAAAAAATTGAAGGAGAAGCAGGGAAG
TTAAGTTGGCATGGTGCATGATTGTGTGGTGTGGGGTAGCGTGATACTGC
TGCCAGATAAGGAAGGTGAGTGTGGAGGAGTGGAAGAGAGAAGAAAATGG
CAAGATAAGGTAGTCAAGGCACTGCAAACCGCAAACAAGATAAAAAAAAG
AGGGAGTTCCAGAAGAAAAAGAATAAAAACAAAATCAATCTTTTA

Coding sequence (CDS) from alignment at scaffold_25:144576..146670-

>mRNA_8098 ID=mRNA_8098|Name=jgi.p|Nanoce1779_2|602475|organism=Nannochloropsis oceanica|type=CDS|length=1650bp|location=Sequence derived from alignment at scaffold_25:144576..146670- (Nannochloropsis oceanica)
ATGTCACGCGGGCTGAATTATAACCAGGCCGCAGGCCTTCAAGGCATGCT
CAAGGAAGGCACGAAAAGCATGGAGGGGGTGGACGAGGCCGTCATCCGCA
ACATCGAAGCCGCTAAGCAACTCGCCCGCATCTGCTCCTCCTCAATGGGA
CCGAATGGGCTCAAGAAGCTCGTCGTGAACCACCTAGAGAAGATCATCGT
CACCAGCGACTGTGCCACCATCCTGAAGGAATTGGAAGTGCAACATCCTG
CTGCGAAAATGCTCGTGTTGGCCGCCATGATGCAAGAAAAAGAATGCGGG
GACGCGACCAACCTCACCGTGTCCTTCGCAGGAGAGCTCCTGAAAAAAGC
TGAAGACCTTCTCCACACCGGTTTGCACCCAAGTGAAATCGTTGCCGGAT
ACCGCACTGCTTTCGAAAAGGCCATGGATATCCTCCCTACCCTCACGGTG
CACACCGTGGACGACCCCCGTGATGCTTTACAAGTCTCTCATGTCTTGGA
GTCGGTTCTTGGGACGAAATACTTTGGTTTCCAAGCTACTTTGGCCCCCT
ACGTCACACAGGCTTGCCAAGCCGTCATGCCTTCGTTGCCGAAGAAACCG
TCGTTGAATGTAGACTCGGTCAGGGTATGCAAATTGCAAGGGGGGACGAT
AGAAGACAGTTTAGTGATGAAGGGCATTGTGGTGTCCAGGAGCACGGAGG
GCACGATTAAAAGGGCCCTCAAGGCGAAAGTGGCCGTGTATGGCTGTGGG
ATAGAGGCGTCTTCGACAGAAACGAAGGGAACAGTGCTGATTCGAAATGC
GGAGGATTTGTTGAATTATAACAAGGGGGAGGAGAAGCTGATGGAGGACA
TCATTAAAGGGATTGCCGAGAGCGGGATAGCAGTAGTGGTCACAGGCGGG
TCGATCAGCGAAATGGCTTTGCACTTCCTTGAGCGATACAAGTTGATGGT
TGTCAAGATTCCATCCAAGTGGGAGTTGAGGCGGTTGTGCGGTGCTGTGA
ATGCGACTGCGTTGGTGAGGTTAGGCCCCCCCACGGCGGAGGAGGCGGGC
TTTGTGGATGTGGTGGAGGTGAGGGAGGTGGGGGGTAGGAAGATCACGGT
GTTTGAGCAAAATGCGGAGGAGAGTCGGGTGGCGAGTATCATCTTGAGGG
CGAGCACGCATAACGTGCTGGAGGACTTGGAGAGGGCGGTTGATGATGGG
GTGAACATGGTGAAGGTCTTGTGCACGGACGGTCGGTTCTTGCCGGGAGC
GGGCGCCGTGGAGATCGAGCTGGCGAGACGGATCTATAAGCTGGCGGATG
CTACAACGGGGCTTGATCAGTACGCGATGAGGAAGTTCGCGGAGGCCTTG
GAAATAGTGCCAAGGACCCTGGCAGAGAGCTCGGGGCAGGACGCGACTGA
TACGGTGGCGGCCCTGTACGCCGAGCACGAGAAGGGGAATGTCACTGCAG
GGGTGGATGTGGAAGGGACTGGGGTGAAGGTAGGGGCAGAGGGAGTGCAG
GGTGTGTGCGACTCGTTGTTCGTAAAGGACTCGGCGTTGCGGTTGGCGGT
GGATGCGGCGCTGACGGTGTTGAGGGTTGACCAGATTATCATGTCCAAGC
CGGCAGGAGGGCCCAAGCCTCCCGCCGGGGGGGGAGGAGATGAGGAATAA

Synonyms

Publications