jgi.p|Nanoce1779_2|602366, mRNA_8061 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602366
Unique Name	mRNA_8061
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1106
Alignment location	scaffold_25:61859..63340 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602452
Track	FilteredModels2
ProteinId	602366

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:61859..63340 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602366	gene_8061	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602366	mRNA_8061-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8061	CDS_8061	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:61859..63340+
coding sequence from alignment at scaffold_25:61859..63340+

mRNA sequence

>mRNA_8061 ID=mRNA_8061|Name=jgi.p|Nanoce1779_2|602366|organism=Nannochloropsis oceanica|type=mRNA|length=1106bp
ACAGGCTGTTTCTTATACCAAACCAATGACCCAGCAGCAGCGTTTCAGGG
GCAAGGTGGTGGTTGTAACAGGCGGCGGCGCCGGCATCGGGGCAGCCATC
TGCGAGCGGTTTCATACTGAAGGTGCCAAGGTCTATATCGTGGACGTGAA
CGAGAGAGCTGCCGATGCCACGGCAGCGGCACTCACCGACAAGCAAGCCG
ACGCAATTGGAGCAGAGGACGGGCAAGCCCCAAGAGCAGTGGCAGCAATC
GTGGACATCTCCCAAGAGGCCCTTGTGAGTGCTTTCATGGACCAAGTGCA
TGCCACGGACGGACGACTAGATGTACTGGTGAACAATGCCGCGCGGTTTG
TACTCAAGAGTGCGGAGGGGGCAACCGAGACGGATTGGGACGTGGTGATG
GGAAGTAATATAAAAGGGTATGGCCTGGCTTCAAAACACGCGATTCGGGT
GATGAAGGCGACTATGGCCAAGGGGAGTGCCAGCGAAGCTTCCGGGTGCT
CGATCGTGAATCTTGGCTCCATTTCGTCGTTTGTGGGACAGGCAGGCATG
TGTACTTATAGCGCTACCAAAGCCGCCATTTTAGCCTTGACAAGATGCAC
AGCAATTGACTGTGGTCCTTATGGGATAAGGGTGAACGCGATATGTCCTG
GCCCTATTTTGACGGAGGCGACAAAGAAGCATGCTGATAGCCAGGGTAAG
AACATGGACGACATGGTTTCTGAGCTGACAGGACATATGATCCAGCATCG
AATGGGAGCACCTTCAGAAGTGGCTGCTGCCGTTGCATTTATGGCCAGTG
TGGATGCCACGTTTATAACAGGGGCCTCCCTTTTGGTGGATGGGGGGTAT
TCTGCTTTGTAGCTTTTTTGGAAGGGATGGGAAGAAGAAAGAGGAATCGG
GAGATTATATAAGTAGTTGTGGCTGCCACGGTATCCATAACTGTTGCGAA
TGTCTTTCGAGATGTCCATGTAGGGAGATGGGTTTGGCACTCAACTTTGT
AAATTGAGGGAGGATTGGGGCTGGAGAGGACGTAAGAGCGCACAAAACCG
AGGAGGCTCTCCACTCGCGGGCGCAAAAGATGGAACGACAAGTTGTGATG
TACGTA

protein sequence of jgi.p|Nanoce1779_2|602366

>mRNA_8061-protein ID=mRNA_8061-protein|Name=jgi.p|Nanoce1779_2|602366|organism=Nannochloropsis oceanica|type=polypeptide|length=279bp
MTQQQRFRGKVVVVTGGGAGIGAAICERFHTEGAKVYIVDVNERAADATA
AALTDKQADAIGAEDGQAPRAVAAIVDISQEALVSAFMDQVHATDGRLDV
LVNNAARFVLKSAEGATETDWDVVMGSNIKGYGLASKHAIRVMKATMAKG
SASEASGCSIVNLGSISSFVGQAGMCTYSATKAAILALTRCTAIDCGPYG
IRVNAICPGPILTEATKKHADSQGKNMDDMVSELTGHMIQHRMGAPSEVA
AAVAFMASVDATFITGASLLVDGGYSAL*

mRNA from alignment at scaffold_25:61859..63340+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8061 ID=mRNA_8061|Name=jgi.p|Nanoce1779_2|602366|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp|location=Sequence derived from alignment at scaffold_25:61859..63340+ (Nannochloropsis oceanica)
ACAGGCTGTTTCTTATACCAAACCAATGACCCAGCAGCAGCGTTTCAGGG
GCAAGGTGGTGGTTGTAACAGGTACTTTTGTTTTTTTACGTTTTCCTGCC
CTGTCCGTCTTCGCGCGCTCCGTCCACACATGCCTTTACCGCAATCCCAA
CCCCTACCAACTCCGACAGGCGGCGGCGCCGGCATCGGGGCAGCCATCTG
CGAGCGGTTTCATACTGAAGGTGCCAAGGTCTATATCGTGGACGTGAACG
AGAGAGCTGCCGATGCCACGGCAGCGGCACTCACCGACAAGCAAGCCGAC
GCAATTGGAGCAGAGGACGGGCAAGCCCCAAGAGCAGTGGCAGCAATCGT
GGACATCTCCCAAGAGGCCCTTGTGAGTGCTTTCATGGACCAAGTGCATG
CCACGGACGGACGACTAGATGTACTGGTGAACAATGCCGCGCGGTTTGTA
CTCAAGAGGCAAGTAGCTTTGCTCATACTTTCTCCTTTATTTACAGAACT
TTTCACACTGGCCCCCCTCCCTCCTTTCTCCCCCTCCTTTAATTCATTCA
GTGCGGAGGGGGCAACCGAGACGGATTGGGACGTGGTGATGGGAAGTAAT
ATAAAAGGGTATGGCCTGGCTTCAAAACACGCGATTCGGGTGATGAAGGC
GACTATGGCCAAGGGGAGTGCCAGCGAAGCTTGTAGGTATTTGTTTTGCT
TTTGGTCGAGGAGGATTATACGGAAGGCGTATGGAAAGGGTGCATCTACG
TTCGCTTATTCTCCCTCTCTCCGTCTTTGCCTTTACTCAGCCGGGTGCTC
GATCGTGAATCTTGGCTCCATTTCGTCGTTTGTGGGACAGGCAGGCATGT
GTACTTATAGCGCTACCAAAGCCGCCATTTTAGCCTTGACAAGATGCACA
GCAATTGACTGTGGTCCTTATGGGATAAGGGTGAACGCGATATGTCCTGG
CCCTATTTTGACGGAGGCGACAAAGAAGCATGCTGATAGCCAGGTAAGGG
AAGGAGGATGGGGGAGGCGAGCGGCCTTTTGTTCTTACCCGCCTCCCTCC
TCCCTCTCTTTAACAACTAGGGTAAGAACATGGACGACATGGTTTCTGAG
CTGACAGGACATATGATCCAGCATCGAATGGGAGCACCTTCAGAAGTGGC
TGCTGCCGTTGCATTTATGGCCAGTGTGGATGCCACGTTTATAACAGGGG
CCTCCCTTTTGGTGGATGGGGGGTATTCTGCTTTGTAGCTTTTTTGGAAG
GGATGGGAAGAAGAAAGAGGAATCGGGAGATTATATAAGTAGTTGTGGCT
GCCACGGTATCCATAACTGTTGCGAATGTCTTTCGAGATGTCCATGTAGG
GAGATGGGTTTGGCACTCAACTTTGTAAATTGAGGGAGGATTGGGGCTGG
AGAGGACGTAAGAGCGCACAAAACCGAGGAGGCTCTCCACTCGCGGGCGC
AAAAGATGGAACGACAAGTTGTGATGTACGTA

Coding sequence (CDS) from alignment at scaffold_25:61859..63340+

>mRNA_8061 ID=mRNA_8061|Name=jgi.p|Nanoce1779_2|602366|organism=Nannochloropsis oceanica|type=CDS|length=4185bp|location=Sequence derived from alignment at scaffold_25:61859..63340+ (Nannochloropsis oceanica)
ATGACCCAGCAGCAGCGTTTCAGGGGCAAGGTGGTGGTTGTAACAGGCGG
CGGCGCCGGCATCGGGGCAGCCATCTGCGAGCGGTTTCATACTGAAGGTG
CCAAGGTCTATATCGTGGACGTGAACGAGAGAGCTGCCGATGCCACGGCA
GCGGCACTCACCGACAAGCAAGCCGACGCAATTGGAGCAGAGGACGGGCA
AGCCCCAAGAGCAGTGGCAGCAATCGTGGACATCTCCCAAGAGGCCCTTG
TGAGTGCTTTCATGGACCAAGTGCATGCCACGGACGGACGACTAGATGTA
CTGGTGAACAATGCCGCGCGGTTTGTACTCAAGAGTGCGGAGGGGGCAAC
CGAGACGGATTGGGACGTGGTGATGGGAAGTAATATAAAAGGGTATGGCC
TGGCTTCAAAACACGCGATTCGGGTGATGAAGGCGACTATGGCCAAGGGG
AGTGCCAGCGAAGCTTCCGGGTGCTCGATCGTGAATCTTGGCTCCATTTC
GTCGTTTGTGGGACAGGCAGGCATGTGTACTTATAGCGCTACCAAAGCCG
CCATTTTAGCCTTGACAAGATGCACAGCAATTGACTGTGGTCCTTATGGG
ATAAGGGTGAACGCGATATGTCCTGGCCCTATTTTGACGGAGGCGACAAA
GAAGCATGCTGATAGCCAGGGTAAGAACATGGACGACATGGTTTCTGAGC
TGACAGGACATATGATCCAGCATCGAATGGGAGCACCTTCAGAAGTGGCT
GCTGCCGTTGCATTTATGGCCAGTGTGGATGCCACGTTTATAACAGGGGC
CTCCCTTTTGGTGGATGGGGGGTATTCTGCTTTGTAGATGACCCAGCAGC
AGCGTTTCAGGGGCAAGGTGGTGGTTGTAACAGGCGGCGGCGCCGGCATC
GGGGCAGCCATCTGCGAGCGGTTTCATACTGAAGGTGCCAAGGTCTATAT
CGTGGACGTGAACGAGAGAGCTGCCGATGCCACGGCAGCGGCACTCACCG
ACAAGCAAGCCGACGCAATTGGAGCAGAGGACGGGCAAGCCCCAAGAGCA
GTGGCAGCAATCGTGGACATCTCCCAAGAGGCCCTTGTGAGTGCTTTCAT
GGACCAAGTGCATGCCACGGACGGACGACTAGATGTACTGGTGAACAATG
CCGCGCGGTTTGTACTCAAGAGTGCGGAGGGGGCAACCGAGACGGATTGG
GACGTGGTGATGGGAAGTAATATAAAAGGGTATGGCCTGGCTTCAAAACA
CGCGATTCGGGTGATGAAGGCGACTATGGCCAAGGGGAGTGCCAGCGAAG
CTTCCGGGTGCTCGATCGTGAATCTTGGCTCCATTTCGTCGTTTGTGGGA
CAGGCAGGCATGTGTACTTATAGCGCTACCAAAGCCGCCATTTTAGCCTT
GACAAGATGCACAGCAATTGACTGTGGTCCTTATGGGATAAGGGTGAACG
CGATATGTCCTGGCCCTATTTTGACGGAGGCGACAAAGAAGCATGCTGAT
AGCCAGGGTAAGAACATGGACGACATGGTTTCTGAGCTGACAGGACATAT
GATCCAGCATCGAATGGGAGCACCTTCAGAAGTGGCTGCTGCCGTTGCAT
TTATGGCCAGTGTGGATGCCACGTTTATAACAGGGGCCTCCCTTTTGGTG
GATGGGGGGTATTCTGCTTTGTAGATGACCCAGCAGCAGCGTTTCAGGGG
CAAGGTGGTGGTTGTAACAGGCGGCGGCGCCGGCATCGGGGCAGCCATCT
GCGAGCGGTTTCATACTGAAGGTGCCAAGGTCTATATCGTGGACGTGAAC
GAGAGAGCTGCCGATGCCACGGCAGCGGCACTCACCGACAAGCAAGCCGA
CGCAATTGGAGCAGAGGACGGGCAAGCCCCAAGAGCAGTGGCAGCAATCG
TGGACATCTCCCAAGAGGCCCTTGTGAGTGCTTTCATGGACCAAGTGCAT
GCCACGGACGGACGACTAGATGTACTGGTGAACAATGCCGCGCGGTTTGT
ACTCAAGAGTGCGGAGGGGGCAACCGAGACGGATTGGGACGTGGTGATGG
GAAGTAATATAAAAGGGTATGGCCTGGCTTCAAAACACGCGATTCGGGTG
ATGAAGGCGACTATGGCCAAGGGGAGTGCCAGCGAAGCTTCCGGGTGCTC
GATCGTGAATCTTGGCTCCATTTCGTCGTTTGTGGGACAGGCAGGCATGT
GTACTTATAGCGCTACCAAAGCCGCCATTTTAGCCTTGACAAGATGCACA
GCAATTGACTGTGGTCCTTATGGGATAAGGGTGAACGCGATATGTCCTGG
CCCTATTTTGACGGAGGCGACAAAGAAGCATGCTGATAGCCAGGGTAAGA
ACATGGACGACATGGTTTCTGAGCTGACAGGACATATGATCCAGCATCGA
ATGGGAGCACCTTCAGAAGTGGCTGCTGCCGTTGCATTTATGGCCAGTGT
GGATGCCACGTTTATAACAGGGGCCTCCCTTTTGGTGGATGGGGGGTATT
CTGCTTTGTAGATGACCCAGCAGCAGCGTTTCAGGGGCAAGGTGGTGGTT
GTAACAGGCGGCGGCGCCGGCATCGGGGCAGCCATCTGCGAGCGGTTTCA
TACTGAAGGTGCCAAGGTCTATATCGTGGACGTGAACGAGAGAGCTGCCG
ATGCCACGGCAGCGGCACTCACCGACAAGCAAGCCGACGCAATTGGAGCA
GAGGACGGGCAAGCCCCAAGAGCAGTGGCAGCAATCGTGGACATCTCCCA
AGAGGCCCTTGTGAGTGCTTTCATGGACCAAGTGCATGCCACGGACGGAC
GACTAGATGTACTGGTGAACAATGCCGCGCGGTTTGTACTCAAGAGTGCG
GAGGGGGCAACCGAGACGGATTGGGACGTGGTGATGGGAAGTAATATAAA
AGGGTATGGCCTGGCTTCAAAACACGCGATTCGGGTGATGAAGGCGACTA
TGGCCAAGGGGAGTGCCAGCGAAGCTTCCGGGTGCTCGATCGTGAATCTT
GGCTCCATTTCGTCGTTTGTGGGACAGGCAGGCATGTGTACTTATAGCGC
TACCAAAGCCGCCATTTTAGCCTTGACAAGATGCACAGCAATTGACTGTG
GTCCTTATGGGATAAGGGTGAACGCGATATGTCCTGGCCCTATTTTGACG
GAGGCGACAAAGAAGCATGCTGATAGCCAGGGTAAGAACATGGACGACAT
GGTTTCTGAGCTGACAGGACATATGATCCAGCATCGAATGGGAGCACCTT
CAGAAGTGGCTGCTGCCGTTGCATTTATGGCCAGTGTGGATGCCACGTTT
ATAACAGGGGCCTCCCTTTTGGTGGATGGGGGGTATTCTGCTTTGTAGAT
GACCCAGCAGCAGCGTTTCAGGGGCAAGGTGGTGGTTGTAACAGGCGGCG
GCGCCGGCATCGGGGCAGCCATCTGCGAGCGGTTTCATACTGAAGGTGCC
AAGGTCTATATCGTGGACGTGAACGAGAGAGCTGCCGATGCCACGGCAGC
GGCACTCACCGACAAGCAAGCCGACGCAATTGGAGCAGAGGACGGGCAAG
CCCCAAGAGCAGTGGCAGCAATCGTGGACATCTCCCAAGAGGCCCTTGTG
AGTGCTTTCATGGACCAAGTGCATGCCACGGACGGACGACTAGATGTACT
GGTGAACAATGCCGCGCGGTTTGTACTCAAGAGTGCGGAGGGGGCAACCG
AGACGGATTGGGACGTGGTGATGGGAAGTAATATAAAAGGGTATGGCCTG
GCTTCAAAACACGCGATTCGGGTGATGAAGGCGACTATGGCCAAGGGGAG
TGCCAGCGAAGCTTCCGGGTGCTCGATCGTGAATCTTGGCTCCATTTCGT
CGTTTGTGGGACAGGCAGGCATGTGTACTTATAGCGCTACCAAAGCCGCC
ATTTTAGCCTTGACAAGATGCACAGCAATTGACTGTGGTCCTTATGGGAT
AAGGGTGAACGCGATATGTCCTGGCCCTATTTTGACGGAGGCGACAAAGA
AGCATGCTGATAGCCAGGGTAAGAACATGGACGACATGGTTTCTGAGCTG
ACAGGACATATGATCCAGCATCGAATGGGAGCACCTTCAGAAGTGGCTGC
TGCCGTTGCATTTATGGCCAGTGTGGATGCCACGTTTATAACAGGGGCCT
CCCTTTTGGTGGATGGGGGGTATTCTGCTTTGTAG

Synonyms

Publications