jgi.p|Nanoce1779_2|602302, mRNA_8045 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|602302
Unique Name	mRNA_8045
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2179
Alignment location	scaffold_25:26801..29076 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	602388
Track	FilteredModels2
ProteinId	602302

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_25	supercontig	scaffold_25:26801..29076 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602302	gene_8045	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|602302	mRNA_8045-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8045	CDS_8045	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_25:26801..29076+
coding sequence from alignment at scaffold_25:26801..29076+

mRNA sequence

>mRNA_8045 ID=mRNA_8045|Name=jgi.p|Nanoce1779_2|602302|organism=Nannochloropsis oceanica|type=mRNA|length=2179bp
ACAGTGCATGCCGAGCACGGGAAACCCTTTCCTCCTCATCATAGCCTGCT
TGTTGCTACTGCTGCTGTGTCTCTTGCCGCTCCAGACCACCGCTTTCGCC
GCCCCAAATCCAAAGCCCACTATACCACCACCCTCGTCACAAGCAACCAT
GTCCAACTCCAACGACCGAGGCAACGCCCGGCTCGTCGAAGCCTTCGCTG
AGGCCCGCAGCAAGGGCACGGCTACTCTTGTTGCTTTCATTACGGCTGGC
TATCCTACTCGCGATGACACCATACCCCTCCTCCTTGCCCTGCAAAGCGG
CGGAGCCGATGTCATCGAGCTGGGCGTCCCTTTCACCGACCCTCAAGCGG
ACGGCACAACCATTCAACGTGCCAGTGAGGTGGCCTTGCGAAACAAAGTC
CGCCTTCCCGACTGCCTCGATTACATCAAAGCAGCACGGGCGCAGGGCCT
GACGATCCCCGTGGTGTTAATGGGGTACTTTAATCCATTTCTCAACTACG
GCTCGGAGAAGCTCATGGACGACCTGGCCGCTGCGGGTGGTGATGGTTTT
ATTGTTGTGGATTTGCCACCGGAAGAAGGGGCGGAATTTATCAAGCATTG
CCAGAGTCGTGCTCTGTCGTATGTCCCCCTGCTGACTCCTACTAGTGCCG
ATCACCGTTTGGCCTACCTGGCTCAAAGCGCCGGTAGCTTTTGTTATTGC
GTCTCTTTGACAGGTGTGACGGGTTCAAGGAACGACGTACCTGTCGATCT
GAAGGAATTTCTTGGGAGGATTAGGGCGGTGACGGATAAGGAATTGGCGG
TGGGTTTCGGTATCTCAACCCCGGAGCATGTGCAACAGGTCGCAAAGCTT
GCGGATGGTGTGGTGGTGGGAAGTGCGATATTGAATGCGATTGATTCGGC
GGGACCGGAGGCGAGCAGCGAGGCGAGGGCGAAGAAGGTGGAAGGATTTA
TCAGGGAGTTGAAAGCAGGGGCGGGAAAGCCGGGGGGTGCGGGAGATGCC
GGGCGAGTGAGTCATGAGGGGATGAACGGAAATGGGAAGGCCGCGGGGGA
GGAGAAGGCTGAGGAGAGGGACGTGACGCATCGTCATTTTGGCCAGTTCG
GTGGCCGATATATCCCTGAGACCTTGGTGGAGGCCCACAGGGAGTTGGAA
GAGGCTTATACTAAGGCGTTGGCGGACCCGTCGTTTCACGAGGAGATTGC
CTTCTTCCGCAAGCAGTATATTGGAGGGCCAACGCCCATGTACTTTGCCA
AGAGACTGACAGAGGTGGTGGGTGGGGCGGAGATTTGGTTGAAACGGGAG
GAGCTGGCGCATACGGGGGCTCATAAGATCAACAACGCGGTGGGACAGGC
GTTACTGGCGAAACGGTTGGGAAAACGGAGAATTATTGCTGAGACGGGAG
CAGGGCAGCATGGGGTGGCAACGGCGACTGTGTGCGCTTTGATGGACATG
GAATGCATCATTTACATGGGCGCGGCGGATTGTGAACGGCAGGCTTTGAA
TGTCTTCCGAATGAAGATGTTGGGCGCAACGGTTGTTCCTGTGGAGAGCG
GCTCCCGCACCCTGAAAGACGCCATCAATGAAGCGATGCGTGACTGGGTG
ACCAACGTGAGGACGACGCATTACCTGATCGGCTCGGCCATTGGACCTCA
CCCCTTTCCTACCATTGTAAGGGATTTCCAGTCTATCATCGGGAAGGAGG
CCCGGGAGCAGATTTTGGAGATGAAGGGAAGGCTCCCTGACGTCGTAGTG
GCATGCGTGGGGGGGGGGGTCCAATGCCATTGTATGGGCCGACCGGGAGT
GTTGCACGGCACAAGGACATATTTGCAGCAGGATGGAGATGGACAGATAT
TGGAGACGCACTCGATCAGTGCGGGATTAGATTACCCGGGAGTGGGGCCT
GAGCATGCATTTTTGAAGGACTCGGGACGGGCGACGTATGTGGCGGTGAC
TGACAAGCAGGCGCTGGAAGGGTTTAAGATGCTTTGTAAGACCGAAGGGA
TTATCCCGGCGTTGGAGCCGAGTCATGCCCTGTTCACGGCGATTGAGGAG
GCGAAAAAGTTGCCCAAGGACGCGGTGGTGCTAATGAACTTGTGCGGGCG
AGGGGATAAGGATATGATCACAGTGGCGAAGGCCTTGGGGGTCAATTTAG
ATAACATCTTTAGGTAGAGCGAGCAGGGG

protein sequence of jgi.p|Nanoce1779_2|602302

>mRNA_8045-protein ID=mRNA_8045-protein|Name=jgi.p|Nanoce1779_2|602302|organism=Nannochloropsis oceanica|type=polypeptide|length=720bp
MPSTGNPFLLIIACLLLLLLCLLPLQTTAFAAPNPKPTIPPPSSQATMSN
SNDRGNARLVEAFAEARSKGTATLVAFITAGYPTRDDTIPLLLALQSGGA
DVIELGVPFTDPQADGTTIQRASEVALRNKVRLPDCLDYIKAARAQGLTI
PVVLMGYFNPFLNYGSEKLMDDLAAAGGDGFIVVDLPPEEGAEFIKHCQS
RALSYVPLLTPTSADHRLAYLAQSAGSFCYCVSLTGVTGSRNDVPVDLKE
FLGRIRAVTDKELAVGFGISTPEHVQQVAKLADGVVVGSAILNAIDSAGP
EASSEARAKKVEGFIRELKAGAGKPGGAGDAGRVSHEGMNGNGKAAGEEK
AEERDVTHRHFGQFGGRYIPETLVEAHRELEEAYTKALADPSFHEEIAFF
RKQYIGGPTPMYFAKRLTEVVGGAEIWLKREELAHTGAHKINNAVGQALL
AKRLGKRRIIAETGAGQHGVATATVCALMDMECIIYMGAADCERQALNVF
RMKMLGATVVPVESGSRTLKDAINEAMRDWVTNVRTTHYLIGSAIGPHPF
PTIVRDFQSIIGKEAREQILEMKGRLPDVVVACVGGGVQCHCMGRPGVLH
GTRTYLQQDGDGQILETHSISAGLDYPGVGPEHAFLKDSGRATYVAVTDK
QALEGFKMLCKTEGIIPALEPSHALFTAIEEAKKLPKDAVVLMNLCGRGD
KDMITVAKALGVNLDNIFR*

mRNA from alignment at scaffold_25:26801..29076+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8045 ID=mRNA_8045|Name=jgi.p|Nanoce1779_2|602302|organism=Nannochloropsis oceanica|type=mRNA|length=2276bp|location=Sequence derived from alignment at scaffold_25:26801..29076+ (Nannochloropsis oceanica)
ACAGTGCATGCCGAGCACGGGAAACCCTTTCCTCCTCATCATAGCCTGCT
TGTTGCTACTGCTGCTGTGTCTCTTGCCGCTCCAGACCACCGCTTTCGCC
GCCCCAAATCCAAAGCCCACTATACCACCACCCTCGTCACAAGCAACCAT
GTCCAACTCCAACGACCGAGGCAACGCCCGGCTCGTCGAAGCCTTCGCTG
AGGCCCGCAGCAAGGGCACGGCTACTCTTGTTGCTTTCATTACGGCTGGC
TATCCTACTCGCGATGACACCATACCCCTCCTCCTTGCCCTGCAAAGCGG
CGGAGCCGATGTCATCGAGCTGGGCGTCCCTTTCACCGACCCTCAAGCGG
ACGGCACAACCATTCAACGTGCCAGTGAGGTGGCCTTGCGAAACAAAGTC
CGCCTTCCCGACTGCCTCGATTACATCAAAGCAGCACGGGCGCAGGGCCT
GACGATCCCCGTGGTGTTAATGGGGTACTTTAATCCATTTCTCAACTACG
GCTCGGAGAAGCTCATGGACGACCTGGCCGCTGCGGGTGGTGATGGTTTT
ATTGTTGTGGATTTGCCACCGGAAGAAGGGGCGGAATTTATCAAGCATTG
CCAGAGTCGTGCTCTGTCGTATGTCCCCCTGCTGACTCCTACTAGTGCCG
ATCACCGTTTGGCCTACCTGGCTCAAAGCGCCGGTAGCTTTTGTTATTGC
GTCTCTTTGACAGGTGTGACGGGTTCAAGGAACGACGTACCTGTCGATCT
GAAGGAATTTCTTGGGAGGATTAGGGCGGTGACGGATAAGGAATTGGCGG
TGGGTTTCGGTATCTCAACCCCGGAGCATGTGCAACAGGTCGCAAAGCTT
GCGGATGGTGTGGTGGTGGGAAGTGCGATATTGAATGCGATTGATTCGGC
GGGACCGGAGGCGAGCAGCGAGGCGAGGGCGAAGAAGGTGGAAGGATTTA
TCAGGGAGTTGAAAGCAGGGGCGGGAAAGCCGGGGGGTGCGGGAGATGCC
GGGCGAGTGAGTCATGAGGGGATGAACGGAAATGGGAAGGCCGCGGGGGA
GGAGAAGGCTGAGGAGAGGGACGTGACGCATCGTCATTTTGGCCAGTTCG
GTGGCCGATATATCCCTGAGACCTTGGTGGAGGCCCACAGGGAGTTGGAA
GAGGCTTATACTAAGGCGTTGGCGGACCCGTCGTTTCACGAGGAGATTGC
CTTCTTCCGCAAGCAGTATATTGGAGGGCCAACGCCCATGTACTTTGCCA
AGAGACTGACAGAGGTGGTGGGTGGGGCGGAGATTTGGTTGAAACGGGAG
GAGCTGGCGCATACGGGGGCTCATAAGATCAACAACGCGGTGGGACAGGC
GTTACTGGCGAAACGGTTGGGAAAACGGAGAATTATTGCTGAGACGGGAG
CAGGGCAGCATGGGGTGGCAACGGCGACTGTGTGCGCTTTGATGGACATG
GAATGCATCATTTACATGGGCGCGGCGGATTGTGAACGGCAGGCTTTGAA
TGTCTTCCGAATGAAGATGTTGGGCGCAACGGTTGTTCCTGTGGAGAGCG
GCTCCCGCACCCTGAAAGACGCCATCAATGAAGCGATGCGTGACTGGGTG
ACCAACGTGAGGACGACGCATTACCTGATCGGCTCGGCCATTGGACCTCA
CCCCTTTCCTACCATTGTAAGGGATTTCCAGTCTATCATCGGGAAGGAGG
CCCGGGAGCAGATTTTGGAGATGAAGGGAAGGCTCCCTGACGTCGTAGTG
GCATGCGTGGGGGGGGGGGTCCAATGCCATTGGTATGTTCCATCCGTTTA
GAGAGGACGAGAGTGTGAGGCTGGTGGGGGCCGAGGCGGGAGGAGAGGGG
TTGGATGGGAAGAACTCAGCGACATTGAGTATGGGCCGACCGGGAGTGTT
GCACGGCACAAGGACATATTTGCAGCAGGATGGAGATGGACAGATATTGG
AGACGCACTCGATCAGTGCGGGATTAGATTACCCGGGAGTGGGGCCTGAG
CATGCATTTTTGAAGGACTCGGGACGGGCGACGTATGTGGCGGTGACTGA
CAAGCAGGCGCTGGAAGGGTTTAAGATGCTTTGTAAGACCGAAGGGATTA
TCCCGGCGTTGGAGCCGAGTCATGCCCTGTTCACGGCGATTGAGGAGGCG
AAAAAGTTGCCCAAGGACGCGGTGGTGCTAATGAACTTGTGCGGGCGAGG
GGATAAGGATATGATCACAGTGGCGAAGGCCTTGGGGGTCAATTTAGATA
ACATCTTTAGGTAGAGCGAGCAGGGG

Coding sequence (CDS) from alignment at scaffold_25:26801..29076+

>mRNA_8045 ID=mRNA_8045|Name=jgi.p|Nanoce1779_2|602302|organism=Nannochloropsis oceanica|type=CDS|length=4320bp|location=Sequence derived from alignment at scaffold_25:26801..29076+ (Nannochloropsis oceanica)
ATGCCGAGCACGGGAAACCCTTTCCTCCTCATCATAGCCTGCTTGTTGCT
ACTGCTGCTGTGTCTCTTGCCGCTCCAGACCACCGCTTTCGCCGCCCCAA
ATCCAAAGCCCACTATACCACCACCCTCGTCACAAGCAACCATGTCCAAC
TCCAACGACCGAGGCAACGCCCGGCTCGTCGAAGCCTTCGCTGAGGCCCG
CAGCAAGGGCACGGCTACTCTTGTTGCTTTCATTACGGCTGGCTATCCTA
CTCGCGATGACACCATACCCCTCCTCCTTGCCCTGCAAAGCGGCGGAGCC
GATGTCATCGAGCTGGGCGTCCCTTTCACCGACCCTCAAGCGGACGGCAC
AACCATTCAACGTGCCAGTGAGGTGGCCTTGCGAAACAAAGTCCGCCTTC
CCGACTGCCTCGATTACATCAAAGCAGCACGGGCGCAGGGCCTGACGATC
CCCGTGGTGTTAATGGGGTACTTTAATCCATTTCTCAACTACGGCTCGGA
GAAGCTCATGGACGACCTGGCCGCTGCGGGTGGTGATGGTTTTATTGTTG
TGGATTTGCCACCGGAAGAAGGGGCGGAATTTATCAAGCATTGCCAGAGT
CGTGCTCTGTCGTATGTCCCCCTGCTGACTCCTACTAGTGCCGATCACCG
TTTGGCCTACCTGGCTCAAAGCGCCGGTAGCTTTTGTTATTGCGTCTCTT
TGACAGGTGTGACGGGTTCAAGGAACGACGTACCTGTCGATCTGAAGGAA
TTTCTTGGGAGGATTAGGGCGGTGACGGATAAGGAATTGGCGGTGGGTTT
CGGTATCTCAACCCCGGAGCATGTGCAACAGGTCGCAAAGCTTGCGGATG
GTGTGGTGGTGGGAAGTGCGATATTGAATGCGATTGATTCGGCGGGACCG
GAGGCGAGCAGCGAGGCGAGGGCGAAGAAGGTGGAAGGATTTATCAGGGA
GTTGAAAGCAGGGGCGGGAAAGCCGGGGGGTGCGGGAGATGCCGGGCGAG
TGAGTCATGAGGGGATGAACGGAAATGGGAAGGCCGCGGGGGAGGAGAAG
GCTGAGGAGAGGGACGTGACGCATCGTCATTTTGGCCAGTTCGGTGGCCG
ATATATCCCTGAGACCTTGGTGGAGGCCCACAGGGAGTTGGAAGAGGCTT
ATACTAAGGCGTTGGCGGACCCGTCGTTTCACGAGGAGATTGCCTTCTTC
CGCAAGCAGTATATTGGAGGGCCAACGCCCATGTACTTTGCCAAGAGACT
GACAGAGGTGGTGGGTGGGGCGGAGATTTGGTTGAAACGGGAGGAGCTGG
CGCATACGGGGGCTCATAAGATCAACAACGCGGTGGGACAGGCGTTACTG
GCGAAACGGTTGGGAAAACGGAGAATTATTGCTGAGACGGGAGCAGGGCA
GCATGGGGTGGCAACGGCGACTGTGTGCGCTTTGATGGACATGGAATGCA
TCATTTACATGGGCGCGGCGGATTGTGAACGGCAGGCTTTGAATGTCTTC
CGAATGAAGATGTTGGGCGCAACGGTTGTTCCTGTGGAGAGCGGCTCCCG
CACCCTGAAAGACGCCATCAATGAAGCGATGCGTGACTGGGTGACCAACG
TGAGGACGACGCATTACCTGATCGGCTCGGCCATTGGACCTCACCCCTTT
CCTACCATTGTAAGGGATTTCCAGTCTATCATCGGGAAGGAGGCCCGGGA
GCAGATTTTGGAGATGAAGGGAAGGCTCCCTGACGTCGTAGTGGCATGCG
TGGGGGGGGGGGTCCAATGCCATTGTATGGGCCGACCGGGAGTGTTGCAC
GGCACAAGGACATATTTGCAGCAGGATGGAGATGGACAGATATTGGAGAC
GCACTCGATCAGTGCGGGATTAGATTACCCGGGAGTGGGGCCTGAGCATG
CATTTTTGAAGGACTCGGGACGGGCGACGTATGTGGCGGTGACTGACAAG
CAGGCGCTGGAAGGGTTTAAGATGCTTTGTAAGACCGAAGGGATTATCCC
GGCGTTGGAGCCGAGTCATGCCCTGTTCACGGCGATTGAGGAGGCGAAAA
AGTTGCCCAAGGACGCGGTGGTGCTAATGAACTTGTGCGGGCGAGGGGAT
AAGGATATGATCACAGTGGCGAAGGCCTTGGGGGTCAATTTAGATAACAT
CTTTAGGTAGATGCCGAGCACGGGAAACCCTTTCCTCCTCATCATAGCCT
GCTTGTTGCTACTGCTGCTGTGTCTCTTGCCGCTCCAGACCACCGCTTTC
GCCGCCCCAAATCCAAAGCCCACTATACCACCACCCTCGTCACAAGCAAC
CATGTCCAACTCCAACGACCGAGGCAACGCCCGGCTCGTCGAAGCCTTCG
CTGAGGCCCGCAGCAAGGGCACGGCTACTCTTGTTGCTTTCATTACGGCT
GGCTATCCTACTCGCGATGACACCATACCCCTCCTCCTTGCCCTGCAAAG
CGGCGGAGCCGATGTCATCGAGCTGGGCGTCCCTTTCACCGACCCTCAAG
CGGACGGCACAACCATTCAACGTGCCAGTGAGGTGGCCTTGCGAAACAAA
GTCCGCCTTCCCGACTGCCTCGATTACATCAAAGCAGCACGGGCGCAGGG
CCTGACGATCCCCGTGGTGTTAATGGGGTACTTTAATCCATTTCTCAACT
ACGGCTCGGAGAAGCTCATGGACGACCTGGCCGCTGCGGGTGGTGATGGT
TTTATTGTTGTGGATTTGCCACCGGAAGAAGGGGCGGAATTTATCAAGCA
TTGCCAGAGTCGTGCTCTGTCGTATGTCCCCCTGCTGACTCCTACTAGTG
CCGATCACCGTTTGGCCTACCTGGCTCAAAGCGCCGGTAGCTTTTGTTAT
TGCGTCTCTTTGACAGGTGTGACGGGTTCAAGGAACGACGTACCTGTCGA
TCTGAAGGAATTTCTTGGGAGGATTAGGGCGGTGACGGATAAGGAATTGG
CGGTGGGTTTCGGTATCTCAACCCCGGAGCATGTGCAACAGGTCGCAAAG
CTTGCGGATGGTGTGGTGGTGGGAAGTGCGATATTGAATGCGATTGATTC
GGCGGGACCGGAGGCGAGCAGCGAGGCGAGGGCGAAGAAGGTGGAAGGAT
TTATCAGGGAGTTGAAAGCAGGGGCGGGAAAGCCGGGGGGTGCGGGAGAT
GCCGGGCGAGTGAGTCATGAGGGGATGAACGGAAATGGGAAGGCCGCGGG
GGAGGAGAAGGCTGAGGAGAGGGACGTGACGCATCGTCATTTTGGCCAGT
TCGGTGGCCGATATATCCCTGAGACCTTGGTGGAGGCCCACAGGGAGTTG
GAAGAGGCTTATACTAAGGCGTTGGCGGACCCGTCGTTTCACGAGGAGAT
TGCCTTCTTCCGCAAGCAGTATATTGGAGGGCCAACGCCCATGTACTTTG
CCAAGAGACTGACAGAGGTGGTGGGTGGGGCGGAGATTTGGTTGAAACGG
GAGGAGCTGGCGCATACGGGGGCTCATAAGATCAACAACGCGGTGGGACA
GGCGTTACTGGCGAAACGGTTGGGAAAACGGAGAATTATTGCTGAGACGG
GAGCAGGGCAGCATGGGGTGGCAACGGCGACTGTGTGCGCTTTGATGGAC
ATGGAATGCATCATTTACATGGGCGCGGCGGATTGTGAACGGCAGGCTTT
GAATGTCTTCCGAATGAAGATGTTGGGCGCAACGGTTGTTCCTGTGGAGA
GCGGCTCCCGCACCCTGAAAGACGCCATCAATGAAGCGATGCGTGACTGG
GTGACCAACGTGAGGACGACGCATTACCTGATCGGCTCGGCCATTGGACC
TCACCCCTTTCCTACCATTGTAAGGGATTTCCAGTCTATCATCGGGAAGG
AGGCCCGGGAGCAGATTTTGGAGATGAAGGGAAGGCTCCCTGACGTCGTA
GTGGCATGCGTGGGGGGGGGGGTCCAATGCCATTGTATGGGCCGACCGGG
AGTGTTGCACGGCACAAGGACATATTTGCAGCAGGATGGAGATGGACAGA
TATTGGAGACGCACTCGATCAGTGCGGGATTAGATTACCCGGGAGTGGGG
CCTGAGCATGCATTTTTGAAGGACTCGGGACGGGCGACGTATGTGGCGGT
GACTGACAAGCAGGCGCTGGAAGGGTTTAAGATGCTTTGTAAGACCGAAG
GGATTATCCCGGCGTTGGAGCCGAGTCATGCCCTGTTCACGGCGATTGAG
GAGGCGAAAAAGTTGCCCAAGGACGCGGTGGTGCTAATGAACTTGTGCGG
GCGAGGGGATAAGGATATGATCACAGTGGCGAAGGCCTTGGGGGTCAATT
TAGATAACATCTTTAGGTAG

Synonyms

Publications