jgi.p|Nanoce1779_2|602302, gene_8045 (gene) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|602302
Unique Namegene_8045
Typegene
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Alignment locationscaffold_25:26801..29076 +

Link to JBrowse

Properties
Property NameValue
TranscriptId602388
ProteinId602302
Product nametryptophan synthase
Portal idNanoce1779_2
Mutants
Expression

Hover the mouse over a column in the graph to view expression values.
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_25supercontigscaffold_25:26801..29076 +
Analyses
This gene is derived from or has results from the following analyses
Analysis NameDate Performed
GSE1647142022-03-15
GO annotation for N. oceanica CCMP1779 v22020-03-30
PRJNA2856662019-07-03
PRJNA1578672019-07-02
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0004834tryptophan synthase activity
GO:0003824catalytic activity
GO:0030170pyridoxal phosphate binding
Vocabulary: Biological Process
TermDefinition
GO:0006568tryptophan metabolic process
GO:0008152metabolic process
Homology
Relationships

This gene is member of the following syntenic_region feature(s):

Feature NameUnique NameSpeciesType
ncniL040ncniL040Nannochloropsis oceanica (N. oceanica CCMP1779)syntenic_region


This gene is orthologous to the following gene feature(s):

Feature NameUnique NameSpeciesType
NO21G00900NO21G00900Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602302mRNA_8045-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|602302mRNA_8045Nannochloropsis oceanica (N. oceanica CCMP1779)mRNA


Sequences
The following sequences are available for this feature:

protein sequence of jgi.p|Nanoce1779_2|602302

>mRNA_8045-protein ID=mRNA_8045-protein|Name=jgi.p|Nanoce1779_2|602302|organism=Nannochloropsis oceanica|type=polypeptide|length=720bp
MPSTGNPFLLIIACLLLLLLCLLPLQTTAFAAPNPKPTIPPPSSQATMSN
SNDRGNARLVEAFAEARSKGTATLVAFITAGYPTRDDTIPLLLALQSGGA
DVIELGVPFTDPQADGTTIQRASEVALRNKVRLPDCLDYIKAARAQGLTI
PVVLMGYFNPFLNYGSEKLMDDLAAAGGDGFIVVDLPPEEGAEFIKHCQS
RALSYVPLLTPTSADHRLAYLAQSAGSFCYCVSLTGVTGSRNDVPVDLKE
FLGRIRAVTDKELAVGFGISTPEHVQQVAKLADGVVVGSAILNAIDSAGP
EASSEARAKKVEGFIRELKAGAGKPGGAGDAGRVSHEGMNGNGKAAGEEK
AEERDVTHRHFGQFGGRYIPETLVEAHRELEEAYTKALADPSFHEEIAFF
RKQYIGGPTPMYFAKRLTEVVGGAEIWLKREELAHTGAHKINNAVGQALL
AKRLGKRRIIAETGAGQHGVATATVCALMDMECIIYMGAADCERQALNVF
RMKMLGATVVPVESGSRTLKDAINEAMRDWVTNVRTTHYLIGSAIGPHPF
PTIVRDFQSIIGKEAREQILEMKGRLPDVVVACVGGGVQCHCMGRPGVLH
GTRTYLQQDGDGQILETHSISAGLDYPGVGPEHAFLKDSGRATYVAVTDK
QALEGFKMLCKTEGIIPALEPSHALFTAIEEAKKLPKDAVVLMNLCGRGD
KDMITVAKALGVNLDNIFR*
back to top
Synonyms
Publications