jgi.p|Nanoce1779_2|654806, mRNA_7904 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|654806
Unique Name	mRNA_7904
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2901
Alignment location	scaffold_22:127867..130767 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	654892
Track	FilteredModels2
ProteinId	654806

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_22	supercontig	scaffold_22:127867..130767 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|654806	gene_7904	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|654806	mRNA_7904-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7904	CDS_7904	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_22:127867..130767-
coding sequence from alignment at scaffold_22:127867..130767-

mRNA sequence

>mRNA_7904 ID=mRNA_7904|Name=jgi.p|Nanoce1779_2|654806|organism=Nannochloropsis oceanica|type=mRNA|length=2901bp
GGGGGGGGGGGGGGGAGGGGGAATGGGTGGAGGGATGGGTGATCAAGTTC
TAAGCAAGGCACGAGCGTTCCTCCCAAGCGAACAGGTGGAGGGCATGAAT
CGATTAGCTTATTCCTTGGGGGTAAAATCTGCCTTTCAACCTATTTCCTC
TGCTCTTCCTCCGACGACTGCGGCGAGTACAGAGGTGTCATCACCTGTAG
ACATGGATTTGGACGGCTACTTTGATCACCAATATGCCCAGATTATCGCC
AATGCTTTAGACGAAGCAAGCGAAGCGGCAGAGACCTCGGCGCATCGTGC
CCAACTGAGGTGGGAAGACGATGATTGGGCAAGGGCGAAGCAAGAATTAA
TCAAGCATCGAAGGGTGCAGGGAGGAAGGGAAGGAGGGAGGGAGGTATTG
GAGTTGGCTCTGGCGAGGGAGGACGGGAGGGAGGGAGCGATCGAGGTCGC
GGCCGAGGCCGGTCTTAGTGCTGCGAATGCGCTTAGGCTGGCACGAGGGA
CAAGCCGCTTGACGGACACGCAGAGAAGGTACGCCAAGGCGACAAGTGCT
GCTACGGAGGGAGGGAGAGAGGGAGGGAGGGAGCAGGGGCTATGTCAGCG
ACTCCTGAGCGTGGCGAAAGGCATCAGCAGGCTGGGAGGCAGGGAAGGAG
GGGTGGTGGTCGAGGACCAGGACGAGTTCAGGCGTACCTTAGAGCTTCTG
CGAAATATGCTGGAGAAGGAGGAGGGAGAGCGGTACGTCCCTGCCGTCCC
TTCATCCTTCCCTCACTCCACTGCTTTGGAGGGAGAGGGAGGGAACGATG
GAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGCTGTGGAAA
GCCATTTTACCGGGAAGGGCACGCATTCATTTGGAGCTGGACTTCGCCAG
TCATGTTCAGAGGAAGGTGGATAGGGTGAGAGCCGAGAGAGGGGGGGAGG
GAGGGAGGGGAGGAGGGGCGACGATGGAGGAGTATGTAAAGAACTACGGG
AAAGGCGGGCGGGGAGAGAGAGAGGGAGGAGATGAAGATTGGGTGTATGA
GGTGCTTTACTATAGCCTGAGGGCGGGAGGGGTGGAGAGGGCAGTGGAGT
ATGTGGTCGGAGGGGAGGGAGGGGCAAGGGGGATCTTTCCGGAGGTACGG
GCGGTGTTGCTTGATTTATGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGGTGGAGGAGGGGGTGTTGGCGGTCCGGGCGCTGGCGGCACAGAGGG
AGGGGTTAGGGGGAGTGTTCGAGAAGGCCGTGTTGAATCTGCTGGGCTTT
GTGAATGGCGGGCGGTTGGACAAAAAATATGTGGTGAGGACGACGGAAGA
CTACCTGTGGTGGAGTCTGTGGTTCTGCTCGGTGGGGCCCACAGAGGGGG
GGAGGGAGGGAAGGAGGGAGGGGTTGTGGGAGGAGGTGGCTGGGCGAGTC
TTGCGGTGGGGGGAGGCGCACTTTGATAGGGAGGGAGGAAAGGCCTTCCT
GTACTGCCGGGTATTGTTTTGTGTCGGGATGTTCGAGGAGGGTGTTCGGC
ATGTAGCCAAGTCGAAGCATGGAGAAGCGACGCACCTGGCAATTGTTCTG
TCGCACTACAATCTCTTGACCAACTTGACGACGAGGGGTACCTCACCCTC
CCTCCCGTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTTGTTGGAAATGC
TGGTTGTGAGTTACATCAAAGATTTCTGGTTGACGGATCCGACGTACGCT
GCAGACTACCTTTTGTTCCTTCGTCCCGCCATCCCACGCATGGAAGCAGG
GTTGGAGGCCTTGCTACTGGCACAGGAGGAGGATGCCGCCCGCTCACTCC
TGGCCTCGCACCTCAAGGGGAAAACCGTGGTGATTCATGACTTGATCTCC
ACCACGGGGAGGACGAGGATGGGTGAAAGGACGAGGATGTGGAAGAGGTA
TGTTTGGAATGAGACACGGGCGAAGATGGTTTTGAGGAGGGCGGGCATGG
CGGCGGAGGCTTTGGATGCGCGGAAGGCATTAATGCTCTATGTTTTATGC
GAGGATTATAGACGAGCTACGGGAGTGATGAATAAACAGGTGGCGTTGCT
GCTTTTGGCTGGCATGGAGGGAAGGAGGGAGGGGGGAGGGGGAGGGAGGG
AGGAGTGGTGGGGGCTGATGGAACGGGAGGGGAGGGGGCTGGTAGACAAG
TTGGATGAGGAGGGAGGAGGGGATGGTGGGCGAAGGGTGAAAAAGGAATT
TGAATTGTTGGTGGGTTTAAGGCGGTGGTGGGAGGGAGAGAGGGAGAGGG
GGGAGGGGGGGAGGAAAGGAGCAGGGTTGGCGGTGATTTATGATGAATTG
AGGTTGTTCCCCAGGAGGAGTGGGGAGAGGGACGGAGGACGGGCGATGTA
TGTATTGCAAGAAGGGAGCGATGAGATGAAGAGGGTGATGGCCTGTGTGG
CGGTCAAGACGATGCAGGCTCTCTATGGGGAGTGGAGGGGGAGAAAAAGA
CAGCGGGAGGAGGGAGGGGGGGAGGCCGGTAACGAGGGGGGGCTGATAGA
GGTGAGGGAGAAGGGGAGGGCGTTAGTCGAACTGGTGATGGGGGCGAGGA
AGGAGATGGGGAATGATGCGTTGGCCAGCATTCAGAGGTATGAGAGCATG
ATGATATGAGAAGGGAAAAGGAGGAGGGAAGGAGAGGTTGCGGTTGAGTG
GAGAGGAGGTAATGGAAGAAAATAATTCACAATGATGGCTAGAAAGACAA
CAGGTAAACGCAGAAGAAGGGTGAGAAGGAAAGAGAAGTGAAAGAAACCG
ACGAACATGAAAGAAAGAAAGGTCACGTTGATGAAAAAAGGAGGAAACAA
AACCAAAAGAAACAACATAGTTGTAATAGAAGCACTCAAAGCACGAGGGC
C

protein sequence of jgi.p|Nanoce1779_2|654806

>mRNA_7904-protein ID=mRNA_7904-protein|Name=jgi.p|Nanoce1779_2|654806|organism=Nannochloropsis oceanica|type=polypeptide|length=879bp
MGGGMGDQVLSKARAFLPSEQVEGMNRLAYSLGVKSAFQPISSALPPTTA
ASTEVSSPVDMDLDGYFDHQYAQIIANALDEASEAAETSAHRAQLRWEDD
DWARAKQELIKHRRVQGGREGGREVLELALAREDGREGAIEVAAEAGLSA
ANALRLARGTSRLTDTQRRYAKATSAATEGGREGGREQGLCQRLLSVAKG
ISRLGGREGGVVVEDQDEFRRTLELLRNMLEKEEGERYVPAVPSSFPHST
ALEGEGGNDGEEEEEEEEEEEGELWKAILPGRARIHLELDFASHVQRKVD
RVRAERGGEGGRGGGATMEEYVKNYGKGGRGEREGGDEDWVYEVLYYSLR
AGGVERAVEYVVGGEGGARGIFPEVRAVLLDLWKGGREGGREGGVEEGVL
AVRALAAQREGLGGVFEKAVLNLLGFVNGGRLDKKYVVRTTEDYLWWSLW
FCSVGPTEGGREGRREGLWEEVAGRVLRWGEAHFDREGGKAFLYCRVLFC
VGMFEEGVRHVAKSKHGEATHLAIVLSHYNLLTNLTTRGTSPSLPSSSSS
SSSSSLLEMLVVSYIKDFWLTDPTYAADYLLFLRPAIPRMEAGLEALLLA
QEEDAARSLLASHLKGKTVVIHDLISTTGRTRMGERTRMWKRYVWNETRA
KMVLRRAGMAAEALDARKALMLYVLCEDYRRATGVMNKQVALLLLAGMEG
RREGGGGGREEWWGLMEREGRGLVDKLDEEGGGDGGRRVKKEFELLVGLR
RWWEGERERGEGGRKGAGLAVIYDELRLFPRRSGERDGGRAMYVLQEGSD
EMKRVMACVAVKTMQALYGEWRGRKRQREEGGGEAGNEGGLIEVREKGRA
LVELVMGARKEMGNDALASIQRYESMMI*

mRNA from alignment at scaffold_22:127867..130767-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7904 ID=mRNA_7904|Name=jgi.p|Nanoce1779_2|654806|organism=Nannochloropsis oceanica|type=mRNA|length=2901bp|location=Sequence derived from alignment at scaffold_22:127867..130767- (Nannochloropsis oceanica)
GGGGGGGGGGGGGGGAGGGGGAATGGGTGGAGGGATGGGTGATCAAGTTC
TAAGCAAGGCACGAGCGTTCCTCCCAAGCGAACAGGTGGAGGGCATGAAT
CGATTAGCTTATTCCTTGGGGGTAAAATCTGCCTTTCAACCTATTTCCTC
TGCTCTTCCTCCGACGACTGCGGCGAGTACAGAGGTGTCATCACCTGTAG
ACATGGATTTGGACGGCTACTTTGATCACCAATATGCCCAGATTATCGCC
AATGCTTTAGACGAAGCAAGCGAAGCGGCAGAGACCTCGGCGCATCGTGC
CCAACTGAGGTGGGAAGACGATGATTGGGCAAGGGCGAAGCAAGAATTAA
TCAAGCATCGAAGGGTGCAGGGAGGAAGGGAAGGAGGGAGGGAGGTATTG
GAGTTGGCTCTGGCGAGGGAGGACGGGAGGGAGGGAGCGATCGAGGTCGC
GGCCGAGGCCGGTCTTAGTGCTGCGAATGCGCTTAGGCTGGCACGAGGGA
CAAGCCGCTTGACGGACACGCAGAGAAGGTACGCCAAGGCGACAAGTGCT
GCTACGGAGGGAGGGAGAGAGGGAGGGAGGGAGCAGGGGCTATGTCAGCG
ACTCCTGAGCGTGGCGAAAGGCATCAGCAGGCTGGGAGGCAGGGAAGGAG
GGGTGGTGGTCGAGGACCAGGACGAGTTCAGGCGTACCTTAGAGCTTCTG
CGAAATATGCTGGAGAAGGAGGAGGGAGAGCGGTACGTCCCTGCCGTCCC
TTCATCCTTCCCTCACTCCACTGCTTTGGAGGGAGAGGGAGGGAACGATG
GAGAAGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGGGGAGCTGTGGAAA
GCCATTTTACCGGGAAGGGCACGCATTCATTTGGAGCTGGACTTCGCCAG
TCATGTTCAGAGGAAGGTGGATAGGGTGAGAGCCGAGAGAGGGGGGGAGG
GAGGGAGGGGAGGAGGGGCGACGATGGAGGAGTATGTAAAGAACTACGGG
AAAGGCGGGCGGGGAGAGAGAGAGGGAGGAGATGAAGATTGGGTGTATGA
GGTGCTTTACTATAGCCTGAGGGCGGGAGGGGTGGAGAGGGCAGTGGAGT
ATGTGGTCGGAGGGGAGGGAGGGGCAAGGGGGATCTTTCCGGAGGTACGG
GCGGTGTTGCTTGATTTATGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGG
AGGGGTGGAGGAGGGGGTGTTGGCGGTCCGGGCGCTGGCGGCACAGAGGG
AGGGGTTAGGGGGAGTGTTCGAGAAGGCCGTGTTGAATCTGCTGGGCTTT
GTGAATGGCGGGCGGTTGGACAAAAAATATGTGGTGAGGACGACGGAAGA
CTACCTGTGGTGGAGTCTGTGGTTCTGCTCGGTGGGGCCCACAGAGGGGG
GGAGGGAGGGAAGGAGGGAGGGGTTGTGGGAGGAGGTGGCTGGGCGAGTC
TTGCGGTGGGGGGAGGCGCACTTTGATAGGGAGGGAGGAAAGGCCTTCCT
GTACTGCCGGGTATTGTTTTGTGTCGGGATGTTCGAGGAGGGTGTTCGGC
ATGTAGCCAAGTCGAAGCATGGAGAAGCGACGCACCTGGCAATTGTTCTG
TCGCACTACAATCTCTTGACCAACTTGACGACGAGGGGTACCTCACCCTC
CCTCCCGTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTTGTTGGAAATGC
TGGTTGTGAGTTACATCAAAGATTTCTGGTTGACGGATCCGACGTACGCT
GCAGACTACCTTTTGTTCCTTCGTCCCGCCATCCCACGCATGGAAGCAGG
GTTGGAGGCCTTGCTACTGGCACAGGAGGAGGATGCCGCCCGCTCACTCC
TGGCCTCGCACCTCAAGGGGAAAACCGTGGTGATTCATGACTTGATCTCC
ACCACGGGGAGGACGAGGATGGGTGAAAGGACGAGGATGTGGAAGAGGTA
TGTTTGGAATGAGACACGGGCGAAGATGGTTTTGAGGAGGGCGGGCATGG
CGGCGGAGGCTTTGGATGCGCGGAAGGCATTAATGCTCTATGTTTTATGC
GAGGATTATAGACGAGCTACGGGAGTGATGAATAAACAGGTGGCGTTGCT
GCTTTTGGCTGGCATGGAGGGAAGGAGGGAGGGGGGAGGGGGAGGGAGGG
AGGAGTGGTGGGGGCTGATGGAACGGGAGGGGAGGGGGCTGGTAGACAAG
TTGGATGAGGAGGGAGGAGGGGATGGTGGGCGAAGGGTGAAAAAGGAATT
TGAATTGTTGGTGGGTTTAAGGCGGTGGTGGGAGGGAGAGAGGGAGAGGG
GGGAGGGGGGGAGGAAAGGAGCAGGGTTGGCGGTGATTTATGATGAATTG
AGGTTGTTCCCCAGGAGGAGTGGGGAGAGGGACGGAGGACGGGCGATGTA
TGTATTGCAAGAAGGGAGCGATGAGATGAAGAGGGTGATGGCCTGTGTGG
CGGTCAAGACGATGCAGGCTCTCTATGGGGAGTGGAGGGGGAGAAAAAGA
CAGCGGGAGGAGGGAGGGGGGGAGGCCGGTAACGAGGGGGGGCTGATAGA
GGTGAGGGAGAAGGGGAGGGCGTTAGTCGAACTGGTGATGGGGGCGAGGA
AGGAGATGGGGAATGATGCGTTGGCCAGCATTCAGAGGTATGAGAGCATG
ATGATATGAGAAGGGAAAAGGAGGAGGGAAGGAGAGGTTGCGGTTGAGTG
GAGAGGAGGTAATGGAAGAAAATAATTCACAATGATGGCTAGAAAGACAA
CAGGTAAACGCAGAAGAAGGGTGAGAAGGAAAGAGAAGTGAAAGAAACCG
ACGAACATGAAAGAAAGAAAGGTCACGTTGATGAAAAAAGGAGGAAACAA
AACCAAAAGAAACAACATAGTTGTAATAGAAGCACTCAAAGCACGAGGGC
C

Coding sequence (CDS) from alignment at scaffold_22:127867..130767-

>mRNA_7904 ID=mRNA_7904|Name=jgi.p|Nanoce1779_2|654806|organism=Nannochloropsis oceanica|type=CDS|length=2637bp|location=Sequence derived from alignment at scaffold_22:127867..130767- (Nannochloropsis oceanica)
ATGGGTGGAGGGATGGGTGATCAAGTTCTAAGCAAGGCACGAGCGTTCCT
CCCAAGCGAACAGGTGGAGGGCATGAATCGATTAGCTTATTCCTTGGGGG
TAAAATCTGCCTTTCAACCTATTTCCTCTGCTCTTCCTCCGACGACTGCG
GCGAGTACAGAGGTGTCATCACCTGTAGACATGGATTTGGACGGCTACTT
TGATCACCAATATGCCCAGATTATCGCCAATGCTTTAGACGAAGCAAGCG
AAGCGGCAGAGACCTCGGCGCATCGTGCCCAACTGAGGTGGGAAGACGAT
GATTGGGCAAGGGCGAAGCAAGAATTAATCAAGCATCGAAGGGTGCAGGG
AGGAAGGGAAGGAGGGAGGGAGGTATTGGAGTTGGCTCTGGCGAGGGAGG
ACGGGAGGGAGGGAGCGATCGAGGTCGCGGCCGAGGCCGGTCTTAGTGCT
GCGAATGCGCTTAGGCTGGCACGAGGGACAAGCCGCTTGACGGACACGCA
GAGAAGGTACGCCAAGGCGACAAGTGCTGCTACGGAGGGAGGGAGAGAGG
GAGGGAGGGAGCAGGGGCTATGTCAGCGACTCCTGAGCGTGGCGAAAGGC
ATCAGCAGGCTGGGAGGCAGGGAAGGAGGGGTGGTGGTCGAGGACCAGGA
CGAGTTCAGGCGTACCTTAGAGCTTCTGCGAAATATGCTGGAGAAGGAGG
AGGGAGAGCGGTACGTCCCTGCCGTCCCTTCATCCTTCCCTCACTCCACT
GCTTTGGAGGGAGAGGGAGGGAACGATGGAGAAGAGGAAGAGGAGGAGGA
GGAGGAGGAAGAGGGGGAGCTGTGGAAAGCCATTTTACCGGGAAGGGCAC
GCATTCATTTGGAGCTGGACTTCGCCAGTCATGTTCAGAGGAAGGTGGAT
AGGGTGAGAGCCGAGAGAGGGGGGGAGGGAGGGAGGGGAGGAGGGGCGAC
GATGGAGGAGTATGTAAAGAACTACGGGAAAGGCGGGCGGGGAGAGAGAG
AGGGAGGAGATGAAGATTGGGTGTATGAGGTGCTTTACTATAGCCTGAGG
GCGGGAGGGGTGGAGAGGGCAGTGGAGTATGTGGTCGGAGGGGAGGGAGG
GGCAAGGGGGATCTTTCCGGAGGTACGGGCGGTGTTGCTTGATTTATGGA
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGGAGGAGGGGGTGTTG
GCGGTCCGGGCGCTGGCGGCACAGAGGGAGGGGTTAGGGGGAGTGTTCGA
GAAGGCCGTGTTGAATCTGCTGGGCTTTGTGAATGGCGGGCGGTTGGACA
AAAAATATGTGGTGAGGACGACGGAAGACTACCTGTGGTGGAGTCTGTGG
TTCTGCTCGGTGGGGCCCACAGAGGGGGGGAGGGAGGGAAGGAGGGAGGG
GTTGTGGGAGGAGGTGGCTGGGCGAGTCTTGCGGTGGGGGGAGGCGCACT
TTGATAGGGAGGGAGGAAAGGCCTTCCTGTACTGCCGGGTATTGTTTTGT
GTCGGGATGTTCGAGGAGGGTGTTCGGCATGTAGCCAAGTCGAAGCATGG
AGAAGCGACGCACCTGGCAATTGTTCTGTCGCACTACAATCTCTTGACCA
ACTTGACGACGAGGGGTACCTCACCCTCCCTCCCGTCCTCCTCCTCTTCC
TCCTCCTCCTCCTCCTTGTTGGAAATGCTGGTTGTGAGTTACATCAAAGA
TTTCTGGTTGACGGATCCGACGTACGCTGCAGACTACCTTTTGTTCCTTC
GTCCCGCCATCCCACGCATGGAAGCAGGGTTGGAGGCCTTGCTACTGGCA
CAGGAGGAGGATGCCGCCCGCTCACTCCTGGCCTCGCACCTCAAGGGGAA
AACCGTGGTGATTCATGACTTGATCTCCACCACGGGGAGGACGAGGATGG
GTGAAAGGACGAGGATGTGGAAGAGGTATGTTTGGAATGAGACACGGGCG
AAGATGGTTTTGAGGAGGGCGGGCATGGCGGCGGAGGCTTTGGATGCGCG
GAAGGCATTAATGCTCTATGTTTTATGCGAGGATTATAGACGAGCTACGG
GAGTGATGAATAAACAGGTGGCGTTGCTGCTTTTGGCTGGCATGGAGGGA
AGGAGGGAGGGGGGAGGGGGAGGGAGGGAGGAGTGGTGGGGGCTGATGGA
ACGGGAGGGGAGGGGGCTGGTAGACAAGTTGGATGAGGAGGGAGGAGGGG
ATGGTGGGCGAAGGGTGAAAAAGGAATTTGAATTGTTGGTGGGTTTAAGG
CGGTGGTGGGAGGGAGAGAGGGAGAGGGGGGAGGGGGGGAGGAAAGGAGC
AGGGTTGGCGGTGATTTATGATGAATTGAGGTTGTTCCCCAGGAGGAGTG
GGGAGAGGGACGGAGGACGGGCGATGTATGTATTGCAAGAAGGGAGCGAT
GAGATGAAGAGGGTGATGGCCTGTGTGGCGGTCAAGACGATGCAGGCTCT
CTATGGGGAGTGGAGGGGGAGAAAAAGACAGCGGGAGGAGGGAGGGGGGG
AGGCCGGTAACGAGGGGGGGCTGATAGAGGTGAGGGAGAAGGGGAGGGCG
TTAGTCGAACTGGTGATGGGGGCGAGGAAGGAGATGGGGAATGATGCGTT
GGCCAGCATTCAGAGGTATGAGAGCATGATGATATGA

Synonyms

Publications