jgi.p|Nanoce1779_2|600281, mRNA_7861 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|600281
Unique Name	mRNA_7861
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	943
Alignment location	scaffold_21:530888..532753 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	600367
Track	FilteredModels2
ProteinId	600281

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_21	supercontig	scaffold_21:530888..532753 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600281	gene_7861	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|600281	mRNA_7861-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_7861	CDS_7861	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_21:530888..532753+
coding sequence from alignment at scaffold_21:530888..532753+

mRNA sequence

>mRNA_7861 ID=mRNA_7861|Name=jgi.p|Nanoce1779_2|600281|organism=Nannochloropsis oceanica|type=mRNA|length=943bp
CTGATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGC
CGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGC
CTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCCGCT
ACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGCAAGCT
CATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGATAA
AGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACCCGG
ATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACATTCTGGG
AATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAAACGGCA
GAGTCCTGCTGATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGG
CAAGGCGCGAACACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCT
CAGGGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGG
CGGCGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATT
CAGGTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAAC
GAAGGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGA
GGAAGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGC
ATGTATATATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAA
GAGAACTGGAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTT
CTTTCCACTTCCCTTAACTGCCAGCTGGAGTCAGAAACGTACGCCAAAAA
CGCCTACGGGGCGCCTCGCACTGGTGCTGCCATTCCTACTTCT

protein sequence of jgi.p|Nanoce1779_2|600281

>mRNA_7861-protein ID=mRNA_7861-protein|Name=jgi.p|Nanoce1779_2|600281|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MFDDGSRVKAQCILAADGVHSVLRQKFVGDGKPREHGRLIYRSVIPYPAT
DREEMMGKINTEPSKLIHWQPCGEKNTYWAVIKKGGASPPIRRDGNPTRM
KQWLLHEYADFPDILGMIEATPAEGILERPNGRVLLIGDAAHAMILSVGQ
GANTALEDAVYIASYLRDAYALFPKNKGKAVQAAFEAFQNVRVKHCTDIQ
VRRRKRERKRGRKRGTKGGRERREEGKEGNEERKGREGKNRAQRKGRKGM
YIYRLHHSLAISLSRKRTGTNVKYTAHQSSPSSFHFP*

mRNA from alignment at scaffold_21:530888..532753+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_7861 ID=mRNA_7861|Name=jgi.p|Nanoce1779_2|600281|organism=Nannochloropsis oceanica|type=mRNA|length=1866bp|location=Sequence derived from alignment at scaffold_21:530888..532753+ (Nannochloropsis oceanica)
CTGATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGC
CGATGGCGTGCACTCAGGTCGGGAGGGAGGGAGGGAGGGAGGAAGGGGGG
GGGGGGGGGGGGGATTGCCGATAGTGAGGGAGGGATCTTCACCTTGTCCA
TCTGCCATATCATCCTTCCCTCACTCCCTCCCTTCCTCCCTCCCTCCCAG
TGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCACGGGCGC
CTCATTTACCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGAGGAGAT
GATGGGGAAGATTAACACTGAACCGAGGTAGGGAGGGAGGGAGGGAGGGA
GGGATTGTACGATGACGAGAGGACAAAAGGTGACGACCACCTGTGTCCCC
TCCCCTCCTCCTTTCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTC
CCTCCCTCCCTGGGTTCAGTGTTAATCTTCCCTTCCTCCTTTCCTCCCTC
CCTCCTTCAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACACG
TATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGA
CGGTAATCCTACCCGGATGAAGCAATGGCTGTTGCACGAGTACGCTGACT
TTCCCGACATTCTGGGAATGATTGAAGGTAGGTGTAGGCATGCCTTCCCT
CCCTCCCTCCCTCGCACCCTCTTACCTTCCTGTGGCCTCGAAGTCGGCAA
GTGGTGCGAGGAGACTACCTATACTCCCTCCCATCCATGTCCCCTCCCTC
CCTCCCTCCCTCCCTCCCACCTTTCGCAGCGACGCCCGCAGAGGGCATCT
TGGAGCGTCCAAGTGATAGACCGCGCGCCCATCACTCAGTGGTCATACCT
AGACGGCAGAGTCCTGCTGATTGGCGATGCCGTGAGTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCCATCACGGACCATCGAGGACGCTT
CCTACTCTTTCTTCACCCCTTCCCCTCCCTCCCTCCCTCCCTCCCTCCCG
TCCTCCTTCAGGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAAC
ACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAGGTTGGCACG
GAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGGGAAGAGGGGGTCGTCTAG
GTGGCCTCATACCTCAGGTTGATGCCGAGGGAGGGAGGGAGGAAGGGAGG
GAGGGGGGGAAGAGGGGGAAGAGAGGGCGGGAAAGACAGAAAGGCAGCGT
CGATTTTCGCACATTTATCCCATCCATTTGCACGTCACGTTCCACGTGCC
ACAACATGAGGTCGTCGTCTCTCAAGCCTACACTCCCTCCGTCCCTCCCT
CCCTCCCTCCCTCCATCTTTCCTCAGGGACGCCTACGCCCTTTTTCCCAA
GAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGTGC
GGGTCAAGCATTGCACTGACATTCAGGTAAGGAGGAGGAAGAGAGAAAGG
AAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAAGGGAACGAAGGGAGGA
AGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGGGAAGGGAAGAACAGAG
CACAGAGGAAGGGAAGGAAGGGCATGTATATATACAGGCTTCACCACTCA
TTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAACGAATGTAAAGTACAC
CGCTCATCAGTCATCTCCCTCTTCTTTCCACTTCCCTTAACTGCCAGCTG
GAGTCAGAAACGTACGCCAAAAACGCCTACGGGGCGCCTCGCACTGGTGC
TGCCATTCCTACTTCT

Coding sequence (CDS) from alignment at scaffold_21:530888..532753+

>mRNA_7861 ID=mRNA_7861|Name=jgi.p|Nanoce1779_2|600281|organism=Nannochloropsis oceanica|type=CDS|length=6048bp|location=Sequence derived from alignment at scaffold_21:530888..532753+ (Nannochloropsis oceanica)
ATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGCCGA
TGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTA
GAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCCGCTACG
GATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGCAAGCTCAT
CCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGATAAAGA
AGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACCCGGATG
AAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACATTCTGGGAAT
GATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAAACGGCAGAG
TCCTGCTGATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGGCAA
GGCGCGAACACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAG
GGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGG
CGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCAG
GTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAA
GGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGA
AGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCATG
TATATATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGAG
AACTGGAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCTT
TCCACTTCCCTTAAATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGC
ATCTTGGCAGCCGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGG
CGACGGGAAGCCTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTC
CTTACCCCGCTACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAA
CCGAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTG
GGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTA
ATCCTACCCGGATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCC
GACATTCTGGGAATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCG
TCCAAACGGCAGAGTCCTGCTGATTGGCGATGCCGCCCATGCCATGATCC
TCTCTGTGGGGCAAGGCGCGAACACAGCCCTGGAGGACGCAGTGTACATC
GCCTCATACCTCAGGGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAA
AGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATT
GCACTGACATTCAGGTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGG
AAGAGAGGAACGAAGGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGG
GAACGAAGAGAGGAAGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGG
GAAGGAAGGGCATGTATATATACAGGCTTCACCACTCATTGGCCATCTCC
CTCTCCAGAAAGAGAACTGGAACGAATGTAAAGTACACCGCTCATCAGTC
ATCTCCCTCTTCTTTCCACTTCCCTTAAATGTTTGATGACGGCTCGAGGG
TGAAGGCCCAATGCATCTTGGCAGCCGATGGCGTGCACTCAGTGCTCCGG
CAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCACGGGCGCCTCATTTA
CCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGAGGAGATGATGGGGA
AGATTAACACTGAACCGAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAG
AAGAACACGTATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCAT
TCGTCGCGACGGTAATCCTACCCGGATGAAGCAATGGCTGTTGCACGAGT
ACGCTGACTTTCCCGACATTCTGGGAATGATTGAAGCGACGCCCGCAGAG
GGCATCTTGGAGCGTCCAAACGGCAGAGTCCTGCTGATTGGCGATGCCGC
CCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAACACAGCCCTGGAGG
ACGCAGTGTACATCGCCTCATACCTCAGGGACGCCTACGCCCTTTTTCCC
AAGAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGT
GCGGGTCAAGCATTGCACTGACATTCAGGTAAGGAGGAGGAAGAGAGAAA
GGAAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAAGGGAACGAAGGGAG
GAAGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGGGAAGGGAAGAACAG
AGCACAGAGGAAGGGAAGGAAGGGCATGTATATATACAGGCTTCACCACT
CATTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAACGAATGTAAAGTAC
ACCGCTCATCAGTCATCTCCCTCTTCTTTCCACTTCCCTTAAATGTTTGA
TGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGCAGCCGATGGCGTGC
ACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCAC
GGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGA
GGAGATGATGGGGAAGATTAACACTGAACCGAGCAAGCTCATCCACTGGC
AGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGATAAAGAAGGGAGGT
GCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACCCGGATGAAGCAATG
GCTGTTGCACGAGTACGCTGACTTTCCCGACATTCTGGGAATGATTGAAG
CGACGCCCGCAGAGGGCATCTTGGAGCGTCCAAACGGCAGAGTCCTGCTG
ATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAA
CACAGCCCTGGAGGACGCAGTGTACATCGCCTCATACCTCAGGGACGCCT
ACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAG
GCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGACATTCAGGTAAGGAG
GAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAA
GGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGG
GAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAGGGCATGTATATATA
CAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAA
CGAATGTAAAGTACACCGCTCATCAGTCATCTCCCTCTTCTTTCCACTTC
CCTTAAATGTTTGATGACGGCTCGAGGGTGAAGGCCCAATGCATCTTGGC
AGCCGATGGCGTGCACTCAGTGCTCCGGCAGAAGTTTGTGGGCGACGGGA
AGCCTAGAGAGCACGGGCGCCTCATTTACCGCTCTGTCATTCCTTACCCC
GCTACGGATAGGGAGGAGATGATGGGGAAGATTAACACTGAACCGAGCAA
GCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACACGTATTGGGCCGTGA
TAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCGACGGTAATCCTACC
CGGATGAAGCAATGGCTGTTGCACGAGTACGCTGACTTTCCCGACATTCT
GGGAATGATTGAAGCGACGCCCGCAGAGGGCATCTTGGAGCGTCCAAACG
GCAGAGTCCTGCTGATTGGCGATGCCGCCCATGCCATGATCCTCTCTGTG
GGGCAAGGCGCGAACACAGCCCTGGAGGACGCAGTGTACATCGCCTCATA
CCTCAGGGACGCCTACGCCCTTTTTCCCAAGAATAAAGGCAAAGCCGTCC
AGGCGGCGTTCGAGGCCTTTCAGAACGTGCGGGTCAAGCATTGCACTGAC
ATTCAGGTAAGGAGGAGGAAGAGAGAAAGGAAGAGAGGAAGGAAGAGAGG
AACGAAGGGAGGAAGGGAACGAAGGGAGGAAGGGAAGGAAGGGAACGAAG
AGAGGAAGGGAAGGGAAGGGAAGAACAGAGCACAGAGGAAGGGAAGGAAG
GGCATGTATATATACAGGCTTCACCACTCATTGGCCATCTCCCTCTCCAG
AAAGAGAACTGGAACGAATGTAAAGTACACCGCTCATCAGTCATCTCCCT
CTTCTTTCCACTTCCCTTAAATGTTTGATGACGGCTCGAGGGTGAAGGCC
CAATGCATCTTGGCAGCCGATGGCGTGCACTCAGTGCTCCGGCAGAAGTT
TGTGGGCGACGGGAAGCCTAGAGAGCACGGGCGCCTCATTTACCGCTCTG
TCATTCCTTACCCCGCTACGGATAGGGAGGAGATGATGGGGAAGATTAAC
ACTGAACCGAGCAAGCTCATCCACTGGCAGCCCTGCGGGGAGAAGAACAC
GTATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCCTCCCATTCGTCGCG
ACGGTAATCCTACCCGGATGAAGCAATGGCTGTTGCACGAGTACGCTGAC
TTTCCCGACATTCTGGGAATGATTGAAGCGACGCCCGCAGAGGGCATCTT
GGAGCGTCCAAACGGCAGAGTCCTGCTGATTGGCGATGCCGCCCATGCCA
TGATCCTCTCTGTGGGGCAAGGCGCGAACACAGCCCTGGAGGACGCAGTG
TACATCGCCTCATACCTCAGGGACGCCTACGCCCTTTTTCCCAAGAATAA
AGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCAGAACGTGCGGGTCA
AGCATTGCACTGACATTCAGGTAAGGAGGAGGAAGAGAGAAAGGAAGAGA
GGAAGGAAGAGAGGAACGAAGGGAGGAAGGGAACGAAGGGAGGAAGGGAA
GGAAGGGAACGAAGAGAGGAAGGGAAGGGAAGGGAAGAACAGAGCACAGA
GGAAGGGAAGGAAGGGCATGTATATATACAGGCTTCACCACTCATTGGCC
ATCTCCCTCTCCAGAAAGAGAACTGGAACGAATGTAAAGTACACCGCTCA
TCAGTCATCTCCCTCTTCTTTCCACTTCCCTTAAATGTTTGATGACGGCT
CGAGGGTGAAGGCCCAATGCATCTTGGCAGCCGATGGCGTGCACTCAGTG
CTCCGGCAGAAGTTTGTGGGCGACGGGAAGCCTAGAGAGCACGGGCGCCT
CATTTACCGCTCTGTCATTCCTTACCCCGCTACGGATAGGGAGGAGATGA
TGGGGAAGATTAACACTGAACCGAGCAAGCTCATCCACTGGCAGCCCTGC
GGGGAGAAGAACACGTATTGGGCCGTGATAAAGAAGGGAGGTGCCTCTCC
TCCCATTCGTCGCGACGGTAATCCTACCCGGATGAAGCAATGGCTGTTGC
ACGAGTACGCTGACTTTCCCGACATTCTGGGAATGATTGAAGCGACGCCC
GCAGAGGGCATCTTGGAGCGTCCAAACGGCAGAGTCCTGCTGATTGGCGA
TGCCGCCCATGCCATGATCCTCTCTGTGGGGCAAGGCGCGAACACAGCCC
TGGAGGACGCAGTGTACATCGCCTCATACCTCAGGGACGCCTACGCCCTT
TTTCCCAAGAATAAAGGCAAAGCCGTCCAGGCGGCGTTCGAGGCCTTTCA
GAACGTGCGGGTCAAGCATTGCACTGACATTCAGGTAAGGAGGAGGAAGA
GAGAAAGGAAGAGAGGAAGGAAGAGAGGAACGAAGGGAGGAAGGGAACGA
AGGGAGGAAGGGAAGGAAGGGAACGAAGAGAGGAAGGGAAGGGAAGGGAA
GAACAGAGCACAGAGGAAGGGAAGGAAGGGCATGTATATATACAGGCTTC
ACCACTCATTGGCCATCTCCCTCTCCAGAAAGAGAACTGGAACGAATGTA
AAGTACACCGCTCATCAGTCATCTCCCTCTTCTTTCCACTTCCCTTAA

Synonyms

Publications